Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,969,062 T→C T552A (ACA→GCA)  tar ← methyl‑accepting chemotaxis protein II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,969,0620TC100.0% 712.8 / NA 217T552A (ACA→GCA) tarmethyl‑accepting chemotaxis protein II
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (109/108);  total (109/108)

Only 100 of 219 total aligned reads displayed.

AAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGTTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTAT  >  NC_000913/1968972‑1969151
                                                                                          |                                                                                         
  aaCAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTcc                                                                                       <  2:5888971/93‑1 (MQ=255)
  aaCAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTcc                                                                                       >  2:2611802/1‑93 (MQ=255)
    cAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAACGCTTCCCa                                                                                     <  2:6135568/93‑1 (MQ=255)
     aGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAg                                                                                    >  1:4749682/1‑93 (MQ=255)
     aGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAg                                                                                    <  1:3490594/93‑1 (MQ=255)
      gCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGt                                                                                   >  2:732290/1‑93 (MQ=255)
      gCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGt                                                                                   >  1:5134247/1‑93 (MQ=255)
        gTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGttt                                                                                 >  1:119073/1‑93 (MQ=255)
        gTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGttt                                                                                 >  1:3945181/1‑93 (MQ=255)
          ggTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTgg                                                                               >  1:2171067/1‑93 (MQ=255)
          ggTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTgg                                                                               <  2:1702681/93‑1 (MQ=255)
            tCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGAt                                                                             <  1:5204304/93‑1 (MQ=255)
               aaaTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATCCTCGTCAAAATGCTTCCCAGTTTGGATCtt                                                                          <  1:2487087/93‑1 (MQ=255)
                aaTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTg                                                                         >  1:5857324/1‑93 (MQ=255)
                 aTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGt                                                                        <  2:4754261/93‑1 (MQ=255)
                 aTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGt                                                                        <  1:855214/93‑1 (MQ=255)
                 aTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGAACGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGt                                                                        >  2:3330036/1‑93 (MQ=255)
                  ttCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGtt                                                                       >  1:3231687/1‑93 (MQ=255)
                  ttCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGtt                                                                       <  1:657507/93‑1 (MQ=255)
                  ttCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGtt                                                                       >  2:5087383/1‑93 (MQ=255)
                   tCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTc                                                                      >  2:2565433/1‑93 (MQ=255)
                      aaTACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGc                                                                   <  1:4332916/93‑1 (MQ=255)
                       aTACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCa                                                                  <  1:4096110/93‑1 (MQ=255)
                        tACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCaa                                                                 >  2:6284417/1‑93 (MQ=255)
                         aCGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAAt                                                                <  2:1979033/93‑1 (MQ=255)
                         aCGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAAt                                                                >  1:6113551/1‑93 (MQ=255)
                           gATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTc                                                              <  1:2887172/93‑1 (MQ=255)
                            aTTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCg                                                             >  2:6227002/1‑93 (MQ=255)
                             ttAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGc                                                            >  2:2275892/1‑93 (MQ=255)
                             ttAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGc                                                            >  2:2155514/1‑93 (MQ=255)
                             ttAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGc                                                            <  2:4948930/93‑1 (MQ=255)
                              tAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCa                                                           <  2:4108610/93‑1 (MQ=255)
                              tAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCa                                                           <  1:1902215/93‑1 (MQ=255)
                                aaCATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATCCTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGt                                                         <  2:334509/93‑1 (MQ=255)
                                   aTCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGt                                                      <  1:1770497/93‑1 (MQ=255)
                                   aTCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGt                                                      >  2:4206170/1‑93 (MQ=255)
                                   aTCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCCTGTTCAGCAATTCGCAGTCGt                                                      >  1:1308417/1‑93 (MQ=255)
                                    tCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTg                                                     <  2:147804/93‑1 (MQ=255)
                                     cAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTgg                                                    >  2:5120264/1‑93 (MQ=255)
                                      aaCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGc                                                   >  1:3846135/1‑93 (MQ=255)
                                       aCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCt                                                  >  2:458686/1‑93 (MQ=255)
                                       aCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCt                                                  <  1:2745878/93‑1 (MQ=255)
                                       aCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCt                                                  >  1:5964396/1‑93 (MQ=255)
                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                >  2:2356800/1‑93 (MQ=255)
                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                <  2:1259128/93‑1 (MQ=255)
                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                >  1:3969089/1‑93 (MQ=255)
                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                <  1:2022116/93‑1 (MQ=255)
                                          cTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAg                                               >  2:2850530/1‑93 (MQ=255)
                                           tCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGc                                              >  1:3033802/1‑93 (MQ=255)
                                           tCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGc                                              >  1:4954614/1‑93 (MQ=255)
                                             cccATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCg                                            >  1:3111251/1‑93 (MQ=255)
                                              ccATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCgg                                           >  1:2771336/1‑93 (MQ=255)
                                               cATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggt                                          <  1:3791456/93‑1 (MQ=255)
                                               cATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggg                                          >  1:4988475/1‑92 (MQ=255)
                                                aTCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtg                                         >  1:4094472/1‑93 (MQ=255)
                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  2:2544539/1‑93 (MQ=255)
                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  1:1457563/1‑93 (MQ=255)
                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  2:387673/1‑93 (MQ=255)
                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  1:3842305/1‑93 (MQ=255)
                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggggg                                        >  2:2448502/1‑93 (MQ=255)
                                                  cAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtggt                                       <  2:1879222/93‑1 (MQ=255)
                                                        gcAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCa                                 >  1:5210210/1‑93 (MQ=255)
                                                          aaTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGGTCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACt                               >  2:5661919/1‑93 (MQ=255)
                                                          aaTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACt                               >  2:1778269/1‑93 (MQ=255)
                                                           aTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTg                              <  2:6063373/93‑1 (MQ=255)
                                                           aTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTg                              <  2:4816627/93‑1 (MQ=255)
                                                            tGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTgg                             >  2:4308036/1‑93 (MQ=255)
                                                             gACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGc                            <  2:5849276/93‑1 (MQ=255)
                                                             gACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGc                            >  2:3670151/1‑93 (MQ=255)
                                                              aCCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCa                           <  2:5328632/93‑1 (MQ=255)
                                                              aCCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCa                           <  1:4496955/93‑1 (MQ=255)
                                                                cgcgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAgg                         >  1:5727965/1‑93 (MQ=255)
                                                                 gcgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGa                        <  2:5963330/93‑1 (MQ=255)
                                                                 gcgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGa                        <  1:3368463/93‑1 (MQ=255)
                                                                  cgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAc                       >  2:4053189/1‑93 (MQ=255)
                                                                  cgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAc                       <  1:2447384/93‑1 (MQ=255)
                                                                    ttAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCCCTGGCAGGGCgg                     >  2:2711328/1‑93 (MQ=255)
                                                                    ttAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACgg                     >  2:5352233/1‑93 (MQ=255)
                                                                    ttAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACgg                     >  1:1027563/1‑93 (MQ=255)
                                                                     tAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACggg                    >  2:487544/1‑93 (MQ=255)
                                                                      aGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGa                   <  2:4533242/93‑1 (MQ=255)
                                                                      aGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGa                   <  1:901555/93‑1 (MQ=255)
                                                                       gTAAATACTAGTCAAAATGCTTCCCAGTTTGAATCTTGTTCAGCAATTCGAAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGAt                  <  2:1733792/93‑1 (MQ=255)
                                                                          aaTACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgt               <  1:763192/93‑1 (MQ=255)
                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgtgt             >  1:4432768/1‑93 (MQ=255)
                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgtgt             <  1:533381/93‑1 (MQ=255)
                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgggt             >  2:3128719/1‑93 (MQ=255)
                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgggt             >  2:1123241/1‑93 (MQ=255)
                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAAGGGATGgtgt             <  1:141286/93‑1 (MQ=255)
                                                                             aCTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGtt            <  2:4597377/93‑1 (MQ=255)
                                                                             aCTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGtt            <  1:5499989/93‑1 (MQ=255)
                                                                              cTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGttt           <  2:1353541/93‑1 (MQ=255)
                                                                               tCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTg          <  1:1889373/93‑1 (MQ=255)
                                                                                cGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGc         <  1:2559634/93‑1 (MQ=255)
                                                                                cGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGc         <  1:6241463/93‑1 (MQ=255)
                                                                                 gTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCg        <  2:2338845/93‑1 (MQ=255)
                                                                                    aaaaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGtt     >  1:1530482/1‑93 (MQ=255)
                                                                                    aaaaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGtt     >  2:66968/1‑93 (MQ=255)
                                                                                     aaaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGttt    <  2:4217823/93‑1 (MQ=255)
                                                                                      aaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTa   <  2:2492739/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGTTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTAT  >  NC_000913/1968972‑1969151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTAAAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGTTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATTGGT  >  NC_000913/1968969‑1969155
                                                                                             |                                                                                             
TTAAAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGC                                                                                               >  SRR4302533.216637/1‑94 (MQ=60)
 TAAAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCCGGCGGCAATGACCGCGTTAGTAAATAATCGTCAAAATGCT                                                                                              >  SRR4302533.5447336/1‑94 (MQ=60)
 TAAAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCT                                                                                              <  SRR4302533.3971006/94‑1 (MQ=60)
  AAAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTT                                                                                             <  SRR4302533.6085358/94‑1 (MQ=60)
    AAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCC                                                                                           <  SRR4302533.2776290/94‑1 (MQ=60)
     AACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCACCATCATGCGGCAATGACGGCGTTAGTAAATACTCGTCAAAATGCTTCCA                                                                                          >  SRR4302533.1753757/1‑94 (MQ=60)
       CAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAG                                                                                        >  SRR4302533.4778480/1‑94 (MQ=60)
       CAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAG                                                                                        >  SRR4302533.4232227/1‑94 (MQ=60)
        AGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAACATGCTTCCCAGT                                                                                       >  SRR4302533.3121406/1‑94 (MQ=60)
        AGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGT                                                                                       >  SRR4302533.3643867/1‑94 (MQ=60)
        AGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGT                                                                                       <  SRR4302533.3512122/94‑1 (MQ=60)
        AGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGT                                                                                       >  SRR4302533.5165267/1‑94 (MQ=60)
         GCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTT                                                                                      <  SRR4302533.1783032/94‑1 (MQ=60)
          CGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTT                                                                                     >  SRR4302533.3969243/1‑94 (MQ=60)
          CGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTT                                                                                     >  SRR4302533.119829/1‑94 (MQ=60)
           GTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTG                                                                                    <  SRR4302533.2024162/94‑1 (MQ=60)
            TGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGG                                                                                   >  SRR4302533.2184420/1‑94 (MQ=60)
            TGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGG                                                                                   <  SRR4302533.4774686/94‑1 (MQ=60)
             GGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGA                                                                                  <  SRR4302533.590612/94‑1 (MQ=60)
              GTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGAT                                                                                 <  SRR4302533.4118542/94‑1 (MQ=60)
               TCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATC                                                                                <  SRR4302533.5235662/94‑1 (MQ=60)
               TCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATC                                                                                >  SRR4302533.867854/1‑94 (MQ=60)
                 GAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTT                                                                              >  SRR4302533.4515711/1‑94 (MQ=60)
                  AAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATCCTCGTCAAAATGCTTCCCAGTTTGGATCTTG                                                                             <  SRR4302533.2502407/94‑1 (MQ=60)
                  AAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTG                                                                             >  SRR4302533.5892732/1‑94 (MQ=60)
                   AATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGT                                                                            <  SRR4302533.2544215/94‑1 (MQ=60)
                    ATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTT                                                                           <  SRR4302533.860226/94‑1 (MQ=60)
                    ATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTT                                                                           >  SRR4302533.1532258/1‑94 (MQ=60)
                    ATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTT                                                                           <  SRR4302533.3031447/94‑1 (MQ=60)
                    ATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTT                                                                           >  SRR4302533.3251605/1‑94 (MQ=60)
                    ATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTT                                                                           >  SRR4302533.2839178/1‑94 (MQ=60)
                     TTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTC                                                                          <  SRR4302533.661384/94‑1 (MQ=60)
                     TTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTC                                                                          >  SRR4302533.5516250/1‑94 (MQ=60)
                        GAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGC                                                                       >  SRR4302533.5001130/1‑94 (MQ=60)
                         AATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCA                                                                      >  SRR4302533.3871212/1‑94 (MQ=60)
                         AATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCA                                                                      <  SRR4302533.4359021/94‑1 (MQ=60)
                          ATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAA                                                                     >  SRR4302533.2373685/1‑94 (MQ=60)
                          ATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAA                                                                     <  SRR4302533.4121046/94‑1 (MQ=60)
                           TACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAAT                                                                    >  SRR4302533.6150444/1‑94 (MQ=60)
                             CGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTC                                                                  <  SRR4302533.4069325/94‑1 (MQ=60)
                              GATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCG                                                                 <  SRR4302533.2904923/94‑1 (MQ=60)
                               ATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCCATTCGC                                                                >  SRR4302533.1447814/1‑94 (MQ=60)
                                 TAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAG                                                              <  SRR4302533.1913826/94‑1 (MQ=60)
                                 TAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAG                                                              <  SRR4302533.2500852/94‑1 (MQ=60)
                                   AACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTC                                                            <  SRR4302533.4366140/94‑1 (MQ=60)
                                   AACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTC                                                            <  SRR4302533.3856434/94‑1 (MQ=60)
                                     CATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCCTGTTCAGCAATTCGCAGTCGT                                                          >  SRR4302533.1316271/1‑94 (MQ=60)
                                      ATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTG                                                         >  SRR4302533.3970519/1‑94 (MQ=60)
                                      ATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTG                                                         <  SRR4302533.1781277/94‑1 (MQ=60)
                                        CAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGC                                                       >  SRR4302533.3869622/1‑94 (MQ=60)
                                         ATCGCCCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCT                                                      <  SRR4302533.1903848/94‑1 (MQ=60)
                                         AACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCT                                                      >  SRR4302533.6000485/1‑94 (MQ=60)
                                         AACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCT                                                      >  SRR4302533.5049727/1‑94 (MQ=60)
                                         AACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCT                                                      <  SRR4302533.2673846/94‑1 (MQ=60)
                                         AACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCT                                                      <  SRR4302533.533187/94‑1 (MQ=60)
                                          ACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTG                                                     <  SRR4302533.2762713/94‑1 (MQ=60)
                                           CGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGA                                                    >  SRR4302533.3993264/1‑94 (MQ=60)
                                            GCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAG                                                   <  SRR4302533.2034570/94‑1 (MQ=60)
                                             CTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGC                                                  >  SRR4302533.698854/1‑94 (MQ=60)
                                             CTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGC                                                  >  SRR4302533.4984626/1‑94 (MQ=60)
                                             CTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGC                                                  >  SRR4302533.3052364/1‑94 (MQ=60)
                                               CCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCG                                                >  SRR4302533.3130376/1‑94 (MQ=60)
                                               CCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCG                                                >  SRR4302533.5655321/1‑94 (MQ=60)
                                               CCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCG                                                >  SRR4302533.6135511/1‑94 (MQ=60)
                                                CCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGG                                               >  SRR4302533.2788339/1‑94 (MQ=60)
                                                 CCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGG                                              >  SRR4302533.5018720/1‑94 (MQ=60)
                                                  CATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTG                                             >  SRR4302533.3242674/1‑94 (MQ=60)
                                                  CATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTG                                             >  SRR4302533.4119400/1‑94 (MQ=60)
                                                  CATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTG                                             <  SRR4302533.6040045/94‑1 (MQ=60)
                                                  CATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTG                                             <  SRR4302533.3814669/94‑1 (MQ=60)
                                                   ATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGG                                            >  SRR4302533.3865779/1‑94 (MQ=60)
                                                   ATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGG                                            >  SRR4302533.1466353/1‑94 (MQ=60)
                                                       GGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGC                                        >  SRR4302533.3627613/1‑94 (MQ=60)
                                                          GGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCA                                     >  SRR4302533.5241593/1‑94 (MQ=60)
                                                           GCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCAC                                    <  SRR4302533.105820/94‑1 (MQ=60)
                                                            CAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACT                                   >  SRR4302533.1575990/1‑94 (MQ=60)
                                                                 ACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAG                              <  SRR4302533.4524186/94‑1 (MQ=60)
                                                                 ACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAG                              <  SRR4302533.335544/94‑1 (MQ=60)
                                                                 ACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAG                              <  SRR4302533.3450450/94‑1 (MQ=60)
                                                                  CCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGG                             >  SRR4302533.5762555/1‑94 (MQ=60)
                                                                  CCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGG                             >  SRR4302533.894213/1‑94 (MQ=60)
                                                                   CGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGA                            >  SRR4302533.5811828/1‑94 (MQ=60)
                                                                    GCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAC                           <  SRR4302533.1370141/94‑1 (MQ=60)
                                                                    GCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAC                           <  SRR4302533.3389267/94‑1 (MQ=60)
                                                                     CGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACG                          <  SRR4302533.2462486/94‑1 (MQ=60)
                                                                      GTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGG                         >  SRR4302533.1033598/1‑94 (MQ=60)
                                                                        TAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGA                       >  SRR4302533.286955/1‑94 (MQ=60)
                                                                        TAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGA                       <  SRR4302533.2086919/94‑1 (MQ=60)
                                                                         AGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGAT                      >  SRR4302533.243587/1‑94 (MQ=60)
                                                                         AGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGAT                      <  SRR4302533.5239629/94‑1 (MQ=60)
                                                                         AGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGAT                      <  SRR4302533.906844/94‑1 (MQ=60)
                                                                          GTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGGTG                     >  SRR4302533.4539964/1‑94 (MQ=60)
                                                                            AAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGT                   >  SRR4302533.3866907/1‑94 (MQ=60)
                                                                             AATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTG                  <  SRR4302533.767685/94‑1 (MQ=60)
                                                                              ATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGT                 >  SRR4302533.4459563/1‑94 (MQ=60)
                                                                               TACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGGTGGGGTT                >  SRR4302533.4120609/1‑94 (MQ=60)
                                                                               TACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTT                <  SRR4302533.536552/94‑1 (MQ=60)
                                                                               TACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAAGGGATGGTGTT                <  SRR4302533.142189/94‑1 (MQ=60)
                                                                                ACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTT               <  SRR4302533.5533167/94‑1 (MQ=60)
                                                                                  TCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGC             <  SRR4302533.1900913/94‑1 (MQ=60)
                                                                                   CGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCG            >  SRR4302533.5213600/1‑94 (MQ=60)
                                                                                   CGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCG            <  SRR4302533.6278832/94‑1 (MQ=60)
                                                                                   CGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCG            <  SRR4302533.2575401/94‑1 (MQ=60)
                                                                                    GTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGG           >  SRR4302533.5235691/1‑94 (MQ=60)
                                                                                     TCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGT          <  SRR4302533.6180924/94‑1 (MQ=60)
                                                                                     TCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGT          <  SRR4302533.651007/94‑1 (MQ=60)
                                                                                      CAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTTGCAGGACGGGATGGTGTTTGCGGTT         >  SRR4302533.1285454/1‑94 (MQ=60)
                                                                                      CAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTT         >  SRR4302533.1539682/1‑94 (MQ=60)
                                                                                        AAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTT       >  SRR4302533.831513/1‑94 (MQ=60)
                                                                                         AATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTAT      >  SRR4302533.4845130/1‑94 (MQ=60)
                                                                                          ATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATT     >  SRR4302533.4445542/1‑94 (MQ=60)
                                                                                          ATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATT     >  SRR4302533.4509033/1‑94 (MQ=60)
                                                                                          ATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGGTTATT     >  SRR4302533.4355966/1‑94 (MQ=60)
                                                                                           TGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATTG    <  SRR4302533.2627833/94‑1 (MQ=60)
                                                                                             CTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATTGGT  <  SRR4302533.5434817/94‑1 (MQ=60)
                                                                                             CTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATTGGT  <  SRR4302533.316729/94‑1 (MQ=60)
                                                                                             CTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATTGGT  <  SRR4302533.2986964/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTAAAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGTTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTATTGGT  >  NC_000913/1968969‑1969155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑