Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,460,909 |
(C)9→10 |
intergenic (+243/‑123) |
fadL → / → b2345 |
FadL/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,460,900 | 1 | . | C | 79.6%
| 225.4
/ 61.5
| 93 | intergenic (+234/‑132) | fadL/b2345 | FadL/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (3/16); new base C (29/45); total (32/61) |
| Fisher's exact test for biased strand distribution p-value = 6.32e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.20e-01 |
Only 100 of 133 total aligned reads displayed.
GTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAT > NC_000913/2460808‑2460985
|
gTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑Ct < 2:312774/93‑1 (MQ=255)
tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑C‑‑‑CT‑‑‑‑c < 2:3267435/93‑1 (MQ=255)
tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑c < 2:6273286/93‑1 (MQ=255)
tATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑c < 2:2021009/93‑1 (MQ=255)
aTCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑cc > 2:5370042/1‑93 (MQ=255)
ccACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑cccc < 2:5972450/93‑1 (MQ=255)
cacaGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc > 2:3671776/1‑93 (MQ=255)
acaGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑c > 2:1984051/1‑93 (MQ=255)
caGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑cc < 1:5271303/93‑1 (MQ=255)
caGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑cc < 1:1874930/93‑1 (MQ=255)
caGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑cc > 1:4287771/1‑93 (MQ=255)
aCAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑ccccc > 1:4102482/1‑92 (MQ=255)
aCAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑ccccc > 2:189719/1‑92 (MQ=255)
aaaCCTGAAGGGAAAGCCATATTTTCAGGCGTTCTGCTCGTCCTTCCCAAAGAGTTTACTTTTTTTCAATT‑CCAGGA‑T‑‑C‑‑‑CA‑‑‑‑ccccc‑‑cccccct < 2:5963950/93‑4 (MQ=255)
aaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑cccccctg > 2:1395428/1‑89 (MQ=255)
aaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑ccccc‑‑cccccctg < 1:4032882/93‑5 (MQ=255)
tGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTAt < 1:6033877/93‑1 (MQ=255)
aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATtg < 1:1042219/93‑1 (MQ=255)
aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATtgt < 1:3350870/93‑1 (MQ=255)
gAAAGGCATTTTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTgc < 2:3050573/93‑1 (MQ=255)
aaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAAAGTTTTCTTTTCCGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTgcgc < 1:2375906/93‑1 (MQ=255)
ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTc > 2:6248337/1‑93 (MQ=255)
ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTc > 1:2706552/1‑93 (MQ=255)
ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCCTG‑CTATTGTTCGCTCa > 1:3193397/1‑93 (MQ=255)
gCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCa < 2:6294107/93‑1 (MQ=255)
cATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATa < 2:2744958/93‑1 (MQ=255)
attttttCAGGGGTTTTCCTCGTCCTTTTCAAAGAGTTTTCTTTTCTGCATTT‑CCCGGA‑TCCC‑‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATa < 2:4937419/90‑1 (MQ=255)
atatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATa < 1:6195611/93‑1 (MQ=255)
atatTTTCAGGCGTTCTGCTCGGCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATa < 2:1085865/93‑1 (MQ=255)
atatTTTCAGGCGTTCTGCCCGTTCTTTTCAAAGAATTTTCTTTTCTGCATTT‑CCAGGG‑TTCC‑‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATa < 2:5014409/93‑1 (MQ=255)
tatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATac < 1:5737329/93‑1 (MQ=255)
tatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGC‑CTATTGTGCGCTCCTac > 1:3531550/1‑93 (MQ=255)
tatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATaca < 1:6074947/93‑1 (MQ=255)
ttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTc < 2:2334243/93‑1 (MQ=255)
tCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGC‑CTTTTGTGCGCTCATACCCTCa > 1:535511/1‑93 (MQ=255)
aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCaaa < 1:2121986/93‑1 (MQ=255)
aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCaaa < 1:1230928/93‑1 (MQ=255)
aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCaaa < 1:1343155/93‑1 (MQ=255)
aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTCG‑CTCTTGCGCGCTCATAAACTCaat > 1:1909783/1‑92 (MQ=255)
aGGCGTTCTGCCCGTCCTTCTCAAAGAGTTTACTTTTCGGCATTT‑CCAGGA‑TCCC‑‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCaaa < 1:686916/93‑1 (MQ=255)
ggCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑TCAGGA‑T‑‑A‑‑‑CT‑‑‑‑CCCCCCACCCCTGG‑CTCTTGTGGGCTGCTGCACTCCAAt > 2:2219657/1‑93 (MQ=255)
ggCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAAtt < 2:1017846/93‑1 (MQ=255)
gCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAAtt < 1:3692312/93‑1 (MQ=255)
gTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑C‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTaaa < 2:3346971/93‑1 (MQ=255)
gTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑AC‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTaaa < 1:1355823/93‑1 (MQ=255)
tccgCTCGGCCTTTTCAAAGGCGTTACTTTTCCGCATTTCCCGGGACC‑‑C‑‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAg < 2:3655286/90‑1 (MQ=255)
tGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATa < 1:3241168/93‑1 (MQ=255)
tcTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACCCCC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:64595/92‑1 (MQ=255)
tcTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATa < 1:5655384/92‑1 (MQ=255)
gCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAg < 1:562321/93‑1 (MQ=255)
gCTCGTCCTTCCTAAAGAGTTTTCTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATa < 1:3372075/93‑1 (MQ=255)
ccTCGTCCTTTGCAAAGAGTTTTCTTTTCCGCGTTT‑CCAGGA‑G‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATa < 2:5482210/92‑1 (MQ=255)
cTCGTCCTTCTCAAAGAGTTTTCTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAg < 1:1090304/93‑1 (MQ=255)
tCGTCCTTCTCGAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCCCCCCCCC‑‑CCCCGGG‑CTTTTGTGCCCTCATACCATCAAATaaaatacg > 2:262772/1‑89 (MQ=255)
tCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGt < 1:2283881/93‑1 (MQ=255)
ccccccTTCCCAAAGAATTTACTTTTCCGCATTT‑CCAGGA‑TCCA‑‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAgg < 2:2456387/89‑1 (MQ=255)
cGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGt < 2:3525116/93‑1 (MQ=255)
tCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCt > 2:5802056/1‑93 (MQ=255)
ccTTTTCAAAAAGTTTTCTTTTCTGCATTT‑CCAGGA‑TTCC‑‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCt < 2:4734153/93‑1 (MQ=255)
ccTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑AC‑‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCta < 1:3525419/93‑1 (MQ=255)
ccTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCCGG‑TCATTGTGCGCTCCCAGACCCAAATTGAACATAGGGTCta > 1:4539180/1‑93 (MQ=255)
cTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCta < 1:6244790/93‑1 (MQ=255)
ttCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaa > 2:4131071/1‑93 (MQ=255)
tgctaaaGAGTTTTGTTTTCTGCATTT‑TCAAGA‑A‑‑ACCCCC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaa < 1:2062515/89‑1 (MQ=255)
ctcAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaat < 1:347283/93‑1 (MQ=255)
tcAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CCATTTTGCGCTCCAAAACCCAAATTTAAAACAGGTCTtaaaaa > 1:2535832/1‑91 (MQ=255)
cAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑ACT‑CT‑‑‑‑CCCCC‑‑CCCCTGG‑CTTTTGTGTGATCATAACCTCAATTTAAAGATAGGTTCtaaataa > 2:4236006/1‑93 (MQ=255)
cAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaataa < 2:5646554/93‑1 (MQ=255)
cAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCCGGCCTATTGTGGGCTCATACACCCAAATTAAACATACGTTCtaaataa > 1:6179776/1‑93 (MQ=255)
aaaGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaataaa < 2:3862306/93‑1 (MQ=255)
aaGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑C‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat < 2:4584442/93‑1 (MQ=255)
aaGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑TTATGTTGCCCTCATCCACTCAAATGAAAGATTGGTTCAaattaaat > 1:5094194/1‑93 (MQ=255)
aaGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat < 1:6077247/93‑1 (MQ=255)
aaGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGC‑CTTTTGTGCGCCCATACCCCCAAATTAAAAAAAGGTTTTaaataaat > 2:5119269/1‑93 (MQ=255)
aaGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATg < 2:2268513/93‑1 (MQ=255)
agagTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGC‑CTTTTTGGCCCCTACACTCTCAATTTAAAAATAGTTTTtaaataaaag > 2:1679812/1‑91 (MQ=255)
agagTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGa < 2:3125342/93‑1 (MQ=255)
agTTTACTTTTCTGCGTTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 2:378494/93‑1 (MQ=255)
agTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑T‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGc < 2:4757025/93‑1 (MQ=255)
agTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCg < 2:2991174/93‑1 (MQ=255)
tACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtt < 1:2413592/93‑1 (MQ=255)
tcTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttt < 1:1811083/92‑1 (MQ=255)
aCTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttt > 2:4071061/1‑93 (MQ=255)
cTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttt < 2:3437823/93‑1 (MQ=255)
cTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttt < 2:1360749/93‑1 (MQ=255)
tttCTGCATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttttt < 1:5356760/93‑1 (MQ=255)
tCTGCATTT‑CCAGGA‑T‑‑T‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 1:5107444/93‑1 (MQ=255)
tCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGAt > 2:6031134/1‑93 (MQ=255)
tCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATa > 2:5188846/1‑93 (MQ=255)
tGCATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CCATTGTGCGCCTTTACATTCAACTTAAAGATAGGTTTTAAATAAAAGAGCGttttttatta > 2:3983601/1‑89 (MQ=255)
tcATTT‑CCAGGA‑T‑‑ACC‑CC‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAg < 1:1103909/92‑1 (MQ=255)
cATTT‑CCAGGA‑T‑‑G‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTc < 2:248976/93‑1 (MQ=255)
cATTT‑CCAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGt < 1:322997/93‑1 (MQ=255)
tt‑CCAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAt < 2:229655/93‑1 (MQ=255)
cAGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAttt < 1:2837576/93‑1 (MQ=255)
cAGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTc < 2:4030401/93‑1 (MQ=255)
aGGA‑T‑‑A‑‑‑CTCC‑‑CCCCC‑‑CCCCCGG‑CTTTTTTGCCCCCCTACACTCAAATTAAAAATAGGTTTTAAATAAATGAGCGTTTTTTTATATTCTAtttt > 2:1640927/1‑92 (MQ=255)
aGGA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa < 1:1107976/93‑1 (MQ=255)
ggA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAt > 2:4978539/1‑93 (MQ=255)
ggA‑T‑‑A‑‑‑CTC‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAt < 1:289963/93‑1 (MQ=255)
|
GTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTT‑CCAGGA‑T‑‑A‑‑‑CT‑‑‑‑CCCCC‑‑CCCCTGG‑CTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAT > NC_000913/2460808‑2460985
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG > NC_000913/2460817‑2461002
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GACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCC > SRR4302533.4127444/1‑94 (MQ=60)
AAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑T‑‑‑CTC‑C‑‑CCCCCCCCTGG < SRR4302533.5945272/94‑1 (MQ=60)
AACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctgg < SRR4302533.4057432/94‑6 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATTCC‑‑‑CC‑‑C‑‑CCCCCCCCTGGCT < SRR4302533.6034769/94‑1 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCT > SRR4302533.3037789/1‑94 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑CCTCCCCCCCCTGACT > SRR4302533.5632382/1‑94 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctgggc > SRR4302533.3949962/1‑87 (MQ=60)
TGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATT < SRR4302533.6070441/94‑1 (MQ=60)
TGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctcgccat > SRR4302533.1920479/1‑85 (MQ=60)
GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATT < SRR4302533.3938438/94‑1 (MQ=60)
GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATT < SRR4302533.2355708/94‑1 (MQ=60)
AAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCccggcttattt > SRR4302533.1700454/1‑83 (MQ=60)
AGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGT < SRR4302533.1048347/94‑1 (MQ=60)
AGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTG < SRR4302533.3371569/94‑1 (MQ=60)
AAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAAAGTTTTCTTTTCCGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCT < SRR4302533.2390606/94‑1 (MQ=60)
AGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTC > SRR4302533.2723157/1‑94 (MQ=60)
AGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCT‑GCTATTGTTCGCTCA > SRR4302533.3213041/1‑94 (MQ=60)
ATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATAC < SRR4302533.6232783/94‑1 (MQ=60)
ATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGCCTATTGTGCGCTCCTAC > SRR4302533.3553314/1‑94 (MQ=60)
ATATTTTCAGGCGTTCTGCTCGGCCTTCTCAAAGAGTTTTCTTTTCTGCATTTCCAGGATACA‑‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATAC < SRR4302533.5050240/94‑1 (MQ=60)
TATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACA < SRR4302533.5771957/94‑1 (MQ=60)
TATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACAC < SRR4302533.6111692/94‑1 (MQ=60)
TTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACT < SRR4302533.1649534/94‑1 (MQ=60)
TTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACA‑‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTC < SRR4302533.6195342/94‑1 (MQ=60)
TTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑C‑‑‑CT‑‑C‑‑CCCCCCCCccaggccattcttcgcccctccaccca > SRR4302533.538693/1‑67 (MQ=60)
TTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGCCTTTTGTGCGCTCATACCCTCA > SRR4302533.538692/1‑94 (MQ=60)
TCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCctcgcgctttgctgcttctttcctccaa > SRR4302533.1970273/1‑66 (MQ=60)
CAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctcgctcttgcgcgctcataaactcaat > SRR4302533.1921435/1‑65 (MQ=60)
AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.2135067/94‑1 (MQ=60)
AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.1238298/94‑1 (MQ=60)
AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.1351240/94‑1 (MQ=60)
AGGCGTTCTGCCCGTCCTTCTCAAAGAGTTTACTTTTCGGCATTTCCAGGATCCC‑‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.690978/94‑1 (MQ=60)
GCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTA < SRR4302533.3714998/94‑1 (MQ=60)
CGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggcttttgtgccctcctcacctcaacttaa > SRR4302533.630826/1‑61 (MQ=60)
GTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑AC‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAG < SRR4302533.1363974/94‑1 (MQ=60)
TGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAG < SRR4302533.3261142/94‑1 (MQ=60)
TCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACCCCC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATA < SRR4302533.65013/94‑1 (MQ=60)
TCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAG < SRR4302533.5689560/94‑1 (MQ=60)
GCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGG < SRR4302533.565655/94‑1 (MQ=60)
GCTCGTCCTTCCTAAAGAGTTTTCTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAG < SRR4302533.3392899/94‑1 (MQ=60)
CTCGTCCTTCTCAAAGAGTTTTCTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGG < SRR4302533.1096747/94‑1 (MQ=60)
CTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctgcctttttgccgctcataacttcaatttaaatatagt > SRR4302533.4552652/1‑54 (MQ=60)
TCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTT < SRR4302533.1149630/94‑1 (MQ=60)
TCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTT < SRR4302533.2298019/94‑1 (MQ=60)
TCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCccggtcattgtgcgctcccagacccaaattgaacatagggtcta > SRR4302533.4566661/1‑50 (MQ=60)
CCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑AC‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAA < SRR4302533.3547144/94‑1 (MQ=60)
CTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAA < SRR4302533.6282169/94‑1 (MQ=60)
CTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcccgcctttttgcgcgtctacccccccaattaaaaaaagtttgtaa > SRR4302533.105544/1‑48 (MQ=60)
TTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCCGGCTATTTTGCGCTACTACCCTCAAATTAAAAATAGGTTTTAAA > SRR4302533.5481189/1‑94 (MQ=53)
CTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATA < SRR4302533.349403/94‑1 (MQ=60)
CTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggccattttgcgctccaaaacccaaatttaaaacaggtcttaaaaa > SRR4302533.2551441/1‑45 (MQ=60)
TCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCGGCCTATTGTGGGCTCATACACCCAAATTAAACATACGTTCTAAATAA > SRR4302533.6216890/1‑94 (MQ=60)
CAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggcttttctcgggtcatacactcaaattaaaagaagtgtttaaataaa > SRR4302533.4703564/1‑43 (MQ=60)
tgctaaagagttttgttttctgcattttcaagaaacccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAA < SRR4302533.2075233/54‑1 (MQ=60)
AAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGTTATGTTGCCCTCATCCACTCAAATGAAAGATTGGTTCAAATTAAAT > SRR4302533.5124966/1‑94 (MQ=38)
AAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcccggctttttgtggccccaaaccccaaaataaaaaaacattttaaaaaaaa > SRR4302533.35090/1‑42 (MQ=60)
AAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATG < SRR4302533.6114004/94‑1 (MQ=60)
AGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAG > SRR4302533.5275242/1‑94 (MQ=60)
GTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑T‑‑CCCCCCCCctttgatcttctaacctcgccgacgcaaattgaagattgtttttaagtaaataacat > SRR4302533.421627/1‑37 (MQ=60)
GTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCggcggatacagcagcaccgcaacaacaatgtaaataacaaaaaataataacccaaca > SRR4302533.4360693/1‑37 (MQ=60)
GTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggcttttttttgtccattccccccaattaaaaaaagtgctttaaaaaataaagt > SRR4302533.2241106/1‑37 (MQ=60)
TTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCccgggctatgggggggtaatcaactaaaattaaagaaaggttttaaaaaaaaaagggt > SRR4302533.350952/1‑36 (MQ=60)
TACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTT < SRR4302533.2428504/94‑1 (MQ=60)
TCTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTT < SRR4302533.1822147/94‑1 (MQ=60)
TTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcccggccattttggccccctacacccaatttaaaaaaaggttttaaataaataagagtttttt > SRR4302533.4636367/1‑31 (MQ=60)
TTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTG < SRR4302533.5388914/94‑1 (MQ=60)
TTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCCGCCTCTTGTCCGCTCATACACTCAACTTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTT > SRR4302533.5320670/1‑94 (MQ=60)
TCTGCATTTCCAGGAT‑‑T‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGAT < SRR4302533.5138301/94‑1 (MQ=60)
CTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATA < SRR4302533.3065341/94‑1 (MQ=60)
CTGCATTTCCAGGA‑‑‑AGCCCC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATA < SRR4302533.2617407/94‑1 (MQ=60)
TCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGT < SRR4302533.1110447/94‑1 (MQ=60)
CATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTC < SRR4302533.324968/94‑1 (MQ=60)
CATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTC < SRR4302533.3505617/94‑1 (MQ=60)
CTTTCCAGGAT‑‑C‑‑‑CT‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAT < SRR4302533.1998844/94‑1 (MQ=60)
ATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACCCAAATTAAAAATAAGTTCTAAATAAATAAGCGTTTTTTtttaatct > SRR4302533.4829649/1‑86 (MQ=60)
ATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTA < SRR4302533.4543468/94‑1 (MQ=60)
TTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAT < SRR4302533.230472/94‑1 (MQ=60)
TCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATT < SRR4302533.3721128/94‑1 (MQ=60)
CAGGAT‑‑T‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTC < SRR4302533.2855042/94‑1 (MQ=60)
CAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTC < SRR4302533.3083398/94‑1 (MQ=60)
CAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTC < SRR4302533.2855041/94‑1 (MQ=60)
AGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAT < SRR4302533.1114547/94‑1 (MQ=60)
GGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGGTATTGTGGGCTCATACACTCAAATTAAAGATAGGGTCTAAATAAATGAGCGTTTTTTGTTTGTTTATTTCAT > SRR4302533.519035/1‑94 (MQ=60)
GGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATT < SRR4302533.291729/94‑1 (MQ=60)
tccaggaaaccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATT < SRR4302533.4436714/81‑1 (MQ=60)
ccaggatcccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTT < SRR4302533.5290293/82‑1 (MQ=60)
AT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTA < SRR4302533.4091138/94‑1 (MQ=60)
gtcccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTA < SRR4302533.1263257/87‑1 (MQ=60)
tctccC‑‑CCCCCTCCTGGCTATTGTGCTCTCATACTCTCAAAGTAAATATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGG < SRR4302533.2913209/89‑1 (MQ=60)
ctccC‑‑CCCCCCCCTGGCTATTGTGCGCCCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGT > SRR4302533.2019477/5‑94 (MQ=60)
tccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGGA > SRR4302533.5302726/4‑94 (MQ=60)
C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATA < SRR4302533.5970676/94‑1 (MQ=60)
CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT > SRR4302533.5755559/1‑94 (MQ=60)
CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT < SRR4302533.4314557/94‑1 (MQ=60)
CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT < SRR4302533.1582036/94‑1 (MQ=60)
CCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATA < SRR4302533.5162584/94‑1 (MQ=60)
CCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATA < SRR4302533.2792787/94‑1 (MQ=60)
CCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATA < SRR4302533.970014/94‑1 (MQ=60)
CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATAT < SRR4302533.4542547/94‑1 (MQ=60)
CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATAT < SRR4302533.71824/94‑1 (MQ=60)
CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATT > SRR4302533.4150642/1‑94 (MQ=60)
CTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG > SRR4302533.2690646/1‑94 (MQ=60)
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GACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG > NC_000913/2460817‑2461002
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
