Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,463,325	A→G	D2G (GAC→GGC)	yfdC →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,463,325	0	A	G	99.6%	847.3 / NA	266	D2G (GAC→GGC)	yfdC	putative transport
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (122/143); minor base T (0/1); total (122/144)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 268 total aligned reads displayed.

TCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGACAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACC  >  NC_000913/2463235‑2463414

tCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCa                                                                                         >  2:5268756/1‑93 (MQ=255)

 cTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCaa                                                                                        <  1:3837013/93‑1 (MQ=255)

  tACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAAc                                                                                       <  1:5075018/93‑1 (MQ=255)

  tACATTGTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAAc                                                                                       <  1:2574958/93‑1 (MQ=255)

       tttCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACaa                                                                                  >  2:1994223/1‑93 (MQ=255)

           agagTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAAtt                                                                              <  2:826956/93‑1 (MQ=255)

           agagTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAAtt                                                                              <  2:463136/93‑1 (MQ=255)

           agagTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAAtt                                                                              >  2:4695508/1‑93 (MQ=255)

            gagTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTg                                                                             >  1:3651734/1‑93 (MQ=255)

            gagTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTg                                                                             >  2:5146163/1‑93 (MQ=255)

             agTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGa                                                                            <  2:3992437/93‑1 (MQ=255)

              gTACCTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGAt                                                                           <  2:5559537/93‑1 (MQ=255)

              gTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGAt                                                                           <  1:1843636/93‑1 (MQ=255)

               tAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATc                                                                          <  2:2343374/93‑1 (MQ=255)

               tAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATc                                                                          <  2:1325884/93‑1 (MQ=255)

                aaCTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCa                                                                         <  1:2255638/93‑1 (MQ=255)

                aaCTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCa                                                                         <  1:4729620/93‑1 (MQ=255)

                   tCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAaca                                                                      >  2:1415490/1‑93 (MQ=255)

                   tCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAaca                                                                      >  2:218243/1‑93 (MQ=255)

                   tCCCGGCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAaca                                                                      <  1:991732/93‑1 (MQ=255)

                    cccGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAacac                                                                     <  1:1908011/93‑1 (MQ=255)

                     ccGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAAcaca                                                                    <  1:4849325/93‑1 (MQ=255)

                      cGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAg                                                                   <  1:2797978/93‑1 (MQ=255)

                        tCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGcg                                                                 >  2:2075715/1‑93 (MQ=255)

                         cAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGcga                                                                <  1:1294930/93‑1 (MQ=255)

                            ttGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGcgacga                                                             >  1:3394288/1‑93 (MQ=255)

                               cGAGCAAATAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAAt                                                          >  2:6164964/1‑93 (MQ=255)

                               cGAGCAAAAAAGCCGTTACGCTTTAGCTATGCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAAt                                                          <  2:5819232/93‑1 (MQ=255)

                                gAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAAtt                                                         <  1:303339/93‑1 (MQ=255)

                                 aGCAAAAAAGCCGATACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGCAATTg                                                        >  1:838007/1‑93 (MQ=255)

                                   cAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGaa                                                      <  1:229637/93‑1 (MQ=255)

                                   cAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGaa                                                      <  1:1670333/93‑1 (MQ=255)

                                    aaaaaaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAg                                                     <  2:268145/93‑1 (MQ=255)

                                     aaaaaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGt                                                    >  1:1048091/1‑93 (MQ=255)

                                     aaaaaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGt                                                    >  2:3337147/1‑93 (MQ=255)

                                      aaaaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGtt                                                   <  1:2656950/93‑1 (MQ=255)

                                       aaaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTg                                                  <  2:5488965/93‑1 (MQ=255)

                                       aaaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTg                                                  >  1:2083451/1‑93 (MQ=255)

                                        aaGCCGCTACGTTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTga                                                 <  2:4575950/93‑1 (MQ=255)

                                        aaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTga                                                 >  2:2593482/1‑93 (MQ=255)

                                        aaGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTga                                                 >  2:3095862/1‑93 (MQ=255)

                                         aGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTgag                                                >  1:1932151/1‑93 (MQ=255)

                                          gCCGCTACGCTTTAGCTATACGTGCTAATTTAAGAGGAGAGACCATGGGCAACGACAAAATTGATCACCACAGCGACGAAATTGACGTTgaga                                               >  2:2854798/1‑93 (MQ=255)

                                          gCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTgaga                                               <  2:4128725/93‑1 (MQ=255)

                                             gCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCg                                            >  2:924941/1‑93 (MQ=255)

                                             gCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCg                                            >  1:2433146/1‑93 (MQ=255)

                                              cTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCga                                           >  2:1228076/1‑93 (MQ=255)

                                               tACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCgaa                                          >  2:4871184/1‑93 (MQ=255)

                                                 cGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCgaaga                                        <  1:468031/93‑1 (MQ=255)

                                                    tttAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGaaaa                                     >  1:3254214/1‑93 (MQ=255)

                                                    tttAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGaaaa                                     >  2:1124797/1‑93 (MQ=255)

                                                    tttAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGaaaa                                     <  2:5315884/93‑1 (MQ=255)

                                                    tttAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGaaaa                                     <  1:5362853/93‑1 (MQ=255)

                                                     ttAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGaaaaa                                    <  1:928731/93‑1 (MQ=255)

                                                     ttAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGaaaaa                                    <  1:4006213/93‑1 (MQ=255)

                                                      tAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAag                                   <  1:4934651/93‑1 (MQ=255)

                                                       aGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAaga                                  <  2:153456/93‑1 (MQ=255)

                                                       aGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAaga                                  >  2:6024665/1‑93 (MQ=255)

                                                        gCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAagag                                 >  1:2688925/1‑93 (MQ=255)

                                                        gCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAagag                                 <  1:1624964/93‑1 (MQ=255)

                                                         cTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgc                                <  1:540408/93‑1 (MQ=255)

                                                         cTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgc                                <  1:352332/93‑1 (MQ=255)

                                                          tataCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgcg                               >  1:1214600/1‑93 (MQ=255)

                                                          tataCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgcg                               >  2:561150/1‑93 (MQ=255)

                                                          tataCGTGCTAATTAAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgcg                               >  2:3851334/1‑93 (MQ=255)

                                                          tagaCGTGCTAAGTCAAGAGAAGAGACTATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgcg                               <  2:677081/90‑1 (MQ=255)

                                                           ataCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgcgc                              >  1:5563356/1‑93 (MQ=255)

                                                           ataCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAgcgc                              <  1:6067197/93‑1 (MQ=255)

                                                           ataCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAAAgcgc                              <  2:4104969/93‑1 (MQ=255)

                                                             aCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCgg                            <  1:2864150/93‑1 (MQ=255)

                                                              cGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGc                           <  1:2948847/93‑1 (MQ=255)

                                                               gTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCa                          >  2:3904025/1‑93 (MQ=255)

                                                                tGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCaa                         >  1:1300720/1‑93 (MQ=255)

                                                                    aaTTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCaaaaaa                     >  2:563262/1‑93 (MQ=255)

                                                                      ttCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaat                   >  1:1151031/1‑93 (MQ=255)

                                                                      ttCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaat                   >  1:4468722/1‑93 (MQ=255)

                                                                       tCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaata                  <  1:453244/93‑1 (MQ=255)

                                                                        cAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatag                 >  2:3188089/1‑93 (MQ=255)

                                                                        cAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatag                 >  1:5909261/1‑93 (MQ=255)

                                                                         aagagaagagACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaataga                >  2:3543067/1‑93 (MQ=255)

                                                                         aagagaagagACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaataga                <  2:3691721/93‑1 (MQ=255)

                                                                          agagaagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaa               <  1:3815110/93‑1 (MQ=255)

                                                                           gagaagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaaa              <  1:157848/93‑1 (MQ=255)

                                                                            agaagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaaat             <  1:3021704/93‑1 (MQ=255)

                                                                             gaagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaaata            >  1:545640/1‑93 (MQ=255)

                                                                             gaagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaaata            <  2:1695608/93‑1 (MQ=255)

                                                                             gaagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaaata            >  2:2764326/1‑93 (MQ=255)

                                                                              aagagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAaaatagaaatag           >  2:4366243/1‑93 (MQ=255)

                                                                               agagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAaatagaaataga          <  1:6258459/93‑1 (MQ=255)

                                                                               agagaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAaatagaaataga          <  2:3098517/93‑1 (MQ=255)

                                                                                  gaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGa       <  1:4335948/93‑1 (MQ=255)

                                                                                  gaCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGa       >  1:7698/1‑93 (MQ=255)

                                                                                   aCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGaa      <  2:2836834/93‑1 (MQ=255)

                                                                                   aCCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGaa      <  2:2977639/93‑1 (MQ=255)

                                                                                    ccATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAg     <  2:5437592/93‑1 (MQ=255)

                                                                                    ccATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAg     <  1:5766273/93‑1 (MQ=255)

                                                                                     cATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGa    <  2:1739053/93‑1 (MQ=255)

                                                                                     cATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGa    >  1:2835227/1‑93 (MQ=255)

                                                                                      aTGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGAc   >  2:4935293/1‑93 (MQ=255)

                                                                                       tGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGAcc  >  2:467417/1‑93 (MQ=255)

TCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGACAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACC  >  NC_000913/2463235‑2463414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGACAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGACT  >  NC_000913/2463232‑2463418

TTTTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGG                                                                                               <  SRR4302533.569028/94‑1 (MQ=60)

TTTTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGG                                                                                               <  SRR4302533.2517727/94‑1 (MQ=60)

TTTTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGG                                                                                               <  SRR4302533.1608238/94‑1 (MQ=60)

 TTTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGC                                                                                              <  SRR4302533.5502380/94‑1 (MQ=60)

  TTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCA                                                                                             >  SRR4302533.1245581/1‑94 (MQ=60)

    CTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAAC                                                                                           <  SRR4302533.3860455/94‑1 (MQ=60)

     TACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACG                                                                                          <  SRR4302533.2802605/94‑1 (MQ=60)

     TACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACG                                                                                          <  SRR4302533.5105695/94‑1 (MQ=60)

     TACATTGTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACG                                                                                          <  SRR4302533.2590799/94‑1 (MQ=60)

       CATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGAC                                                                                        <  SRR4302533.4810223/94‑1 (MQ=60)

          TTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAA                                                                                     <  SRR4302533.990327/94‑1 (MQ=60)

            TCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAAT                                                                                   >  SRR4302533.2444815/1‑94 (MQ=60)

            TCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAAT                                                                                   <  SRR4302533.1942764/94‑1 (MQ=60)

            TCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAAT                                                                                   >  SRR4302533.3639921/1‑94 (MQ=60)

            TCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGAAACGACAAAAT                                                                                   >  SRR4302533.4518171/1‑94 (MQ=60)

             CAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATT                                                                                  >  SRR4302533.3580821/1‑94 (MQ=60)

              AGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTG                                                                                 >  SRR4302533.3674187/1‑94 (MQ=60)

              AGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTG                                                                                 >  SRR4302533.2854294/1‑94 (MQ=60)

                AGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGAT                                                                               <  SRR4302533.3037944/94‑1 (MQ=60)

                AGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGAT                                                                               >  SRR4302533.5326434/1‑94 (MQ=60)

                 GTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATC                                                                              <  SRR4302533.2052061/94‑1 (MQ=60)

                 GTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATC                                                                              <  SRR4302533.1854884/94‑1 (MQ=60)

                  TAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCA                                                                             >  SRR4302533.37885/1‑94 (MQ=60)

                  TAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCA                                                                             <  SRR4302533.4940243/94‑1 (MQ=60)

                  TAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCA                                                                             <  SRR4302533.5131038/94‑1 (MQ=60)

                   AACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAA                                                                            <  SRR4302533.2269591/94‑1 (MQ=60)

                   AACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAA                                                                            <  SRR4302533.2680672/94‑1 (MQ=60)

                   AACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAA                                                                            <  SRR4302533.4758293/94‑1 (MQ=60)

                    ACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAAC                                                                           <  SRR4302533.3371549/94‑1 (MQ=60)

                     CTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACA                                                                          <  SRR4302533.5432079/94‑1 (MQ=60)

                      TCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACAC                                                                         >  SRR4302533.1078980/1‑94 (MQ=60)

                      TCCCGGCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACAC                                                                         <  SRR4302533.997529/94‑1 (MQ=60)

                       CCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACA                                                                        >  SRR4302533.2866329/1‑94 (MQ=60)

                       CCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACA                                                                        <  SRR4302533.1919649/94‑1 (MQ=60)

                        CCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAG                                                                       <  SRR4302533.4878711/94‑1 (MQ=60)

                        CCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAG                                                                       <  SRR4302533.3281484/94‑1 (MQ=60)

                         CGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGC                                                                      <  SRR4302533.2815187/94‑1 (MQ=60)

                            CAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACGAAATTGATCAACACAGCGAC                                                                   <  SRR4302533.3069773/94‑1 (MQ=60)

                            CAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGAC                                                                   <  SRR4302533.1302725/94‑1 (MQ=60)

                            CAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGAC                                                                   >  SRR4302533.61838/1‑94 (MQ=60)

                             AGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACG                                                                  >  SRR4302533.2904681/1‑94 (MQ=60)

                             AGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACG                                                                  >  SRR4302533.2091570/1‑94 (MQ=60)

                             AGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACG                                                                  >  SRR4302533.1599089/1‑94 (MQ=60)

                              GTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGA                                                                 >  SRR4302533.3415251/1‑94 (MQ=60)

                                   GAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTG                                                            <  SRR4302533.305192/94‑1 (MQ=60)

                                   GAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTG                                                            >  SRR4302533.905519/1‑94 (MQ=60)

                                   GAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTG                                                            >  SRR4302533.5475776/1‑94 (MQ=60)

                                   GAGCAAAAAAGCCGATACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGCAATTG                                                            >  SRR4302533.842916/1‑94 (MQ=60)

                                    AGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGA                                                           >  SRR4302533.4519552/1‑94 (MQ=60)

                                    AGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGA                                                           <  SRR4302533.5824082/94‑1 (MQ=60)

                                    AGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGA                                                           >  SRR4302533.3470175/1‑94 (MQ=60)

                                      CAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAG                                                         <  SRR4302533.231060/94‑1 (MQ=60)

                                      CAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAG                                                         <  SRR4302533.5401672/94‑1 (MQ=60)

                                      CAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAG                                                         <  SRR4302533.1680427/94‑1 (MQ=60)

                                       AAAAAAGCCGCTACGCTTTAGCTATCCGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGT                                                        >  SRR4302533.2840934/1‑94 (MQ=60)

                                       AAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGT                                                        >  SRR4302533.1054251/1‑94 (MQ=60)

                                        AAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTT                                                       <  SRR4302533.1187106/94‑1 (MQ=60)

                                         AAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTG                                                      <  SRR4302533.2673273/94‑1 (MQ=60)

                                         AAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTG                                                      >  SRR4302533.2096276/1‑94 (MQ=60)

                                           AAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAG                                                    <  SRR4302533.4180537/94‑1 (MQ=60)

                                           AAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAG                                                    <  SRR4302533.1434621/94‑1 (MQ=60)

                                           AAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAG                                                    <  SRR4302533.251131/94‑1 (MQ=60)

                                           AAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAG                                                    >  SRR4302533.1943937/1‑94 (MQ=60)

                                            AGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGA                                                   >  SRR4302533.1303596/1‑94 (MQ=60)

                                             GCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAG                                                  <  SRR4302533.1898789/94‑1 (MQ=60)

                                              CCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGC                                                 <  SRR4302533.794046/94‑1 (MQ=60)

                                              CCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGA                                                 >  SRR4302533.4379442/1‑94 (MQ=60)

                                               CGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCG                                                >  SRR4302533.2448180/1‑94 (MQ=60)

                                               CGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCG                                                >  SRR4302533.3811348/1‑94 (MQ=60)

                                                 CTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAA                                              >  SRR4302533.135293/1‑94 (MQ=60)

                                                 CTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAA                                              <  SRR4302533.1251011/94‑1 (MQ=60)

                                                  TACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAG                                             >  SRR4302533.5548049/1‑94 (MQ=60)

                                                   ACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGA                                            <  SRR4302533.5684611/94‑1 (MQ=60)

                                                    CGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAA                                           <  SRR4302533.470826/94‑1 (MQ=60)

                                                     GCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAA                                          <  SRR4302533.1196222/94‑1 (MQ=60)

                                                      CTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAA                                         >  SRR4302533.6263892/1‑94 (MQ=60)

                                                      CTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAA                                         >  SRR4302533.3274282/1‑94 (MQ=60)

                                                       TTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAA                                        >  SRR4302533.4988310/1‑94 (MQ=60)

                                                       TTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAA                                        <  SRR4302533.5395061/94‑1 (MQ=60)

                                                       TTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAA                                        <  SRR4302533.787847/94‑1 (MQ=60)

                                                        TTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAG                                       <  SRR4302533.4012861/94‑1 (MQ=60)

                                                        TTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAG                                       <  SRR4302533.4030603/94‑1 (MQ=60)

                                                        TTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAG                                       <  SRR4302533.934184/94‑1 (MQ=60)

                                                         TAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGA                                      <  SRR4302533.4964530/94‑1 (MQ=60)

                                                         TAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGA                                      <  SRR4302533.594678/94‑1 (MQ=60)

                                                          AGCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAG                                     >  SRR4302533.2705410/1‑94 (MQ=60)

                                                           GCTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGC                                    <  SRR4302533.1634804/94‑1 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGATAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   <  SRR4302533.1856840/94‑1 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   >  SRR4302533.3930115/1‑94 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   <  SRR4302533.354482/94‑1 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   <  SRR4302533.543624/94‑1 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   >  SRR4302533.1221896/1‑94 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   <  SRR4302533.959288/94‑1 (MQ=60)

                                                            CTATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCG                                   <  SRR4302533.2909347/94‑1 (MQ=60)

                                                             TATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGC                                  >  SRR4302533.5596982/1‑94 (MQ=60)

                                                              ATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCG                                 <  SRR4302533.2686814/94‑1 (MQ=60)

                                                              ATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCG                                 <  SRR4302533.6103913/94‑1 (MQ=60)

                                                              ATACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCG                                 >  SRR4302533.4813028/1‑94 (MQ=60)

                                                               TACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGG                                <  SRR4302533.2171150/94‑1 (MQ=60)

                                                                ACGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGC                               <  SRR4302533.2881768/94‑1 (MQ=60)

                                                                 CGTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCA                              <  SRR4302533.2966882/94‑1 (MQ=60)

                                                                  GTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAA                             >  SRR4302533.229134/1‑94 (MQ=60)

                                                                  GTGCTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAA                             >  SRR4302533.1308544/1‑94 (MQ=60)

                                                                     CTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAA                          >  SRR4302533.760600/1‑94 (MQ=60)

                                                                     CTAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCCGCAAAAA                          <  SRR4302533.5740473/94‑1 (MQ=60)

                                                                      TAATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAA                         <  SRR4302533.2130233/94‑1 (MQ=60)

                                                                        ATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAAT                       >  SRR4302533.4901029/1‑94 (MQ=60)

                                                                        ATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAAT                       >  SRR4302533.1157926/1‑94 (MQ=60)

                                                                        ATTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAAT                       >  SRR4302533.4495752/1‑94 (MQ=60)

                                                                         TTCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATA                      >  SRR4302533.1744818/1‑94 (MQ=60)

                                                                          TCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAG                     >  SRR4302533.5944959/1‑94 (MQ=60)

                                                                          TCAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAG                     <  SRR4302533.455954/94‑1 (MQ=60)

                                                                           CAAGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGA                    >  SRR4302533.4664293/1‑94 (MQ=60)

                                                                             AGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAA                  >  SRR4302533.4719744/1‑94 (MQ=60)

                                                                             AGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAA                  >  SRR4302533.6033490/1‑94 (MQ=60)

                                                                             AGAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAA                  <  SRR4302533.3838439/94‑1 (MQ=60)

                                                                              GAGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAAT                 <  SRR4302533.158854/94‑1 (MQ=60)

                                                                               AGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATA                <  SRR4302533.3040193/94‑1 (MQ=60)

                                                                               AGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATA                >  SRR4302533.548884/1‑94 (MQ=60)

                                                                               AGAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATA                <  SRR4302533.166009/94‑1 (MQ=60)

                                                                                GAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAG               <  SRR4302533.4286088/94‑1 (MQ=60)

                                                                                GAAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAG               <  SRR4302533.2440061/94‑1 (MQ=60)

                                                                                 AAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGA              <  SRR4302533.5587016/94‑1 (MQ=60)

                                                                                 AAGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGA              >  SRR4302533.2661326/1‑94 (MQ=60)

                                                                                  AGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGAT             <  SRR4302533.4616575/94‑1 (MQ=60)

                                                                                  AGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGAT             <  SRR4302533.3844644/94‑1 (MQ=60)

                                                                                  AGAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGAT             <  SRR4302533.6295883/94‑1 (MQ=60)

                                                                                   GAGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATG            <  SRR4302533.2499323/94‑1 (MQ=60)

                                                                                    AGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGA           <  SRR4302533.3045933/94‑1 (MQ=60)

                                                                                    AGACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGA           >  SRR4302533.7764/1‑94 (MQ=60)

                                                                                     GACCATGGGCAATGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAA          <  SRR4302533.2802568/94‑1 (MQ=60)

                                                                                     GACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAA          <  SRR4302533.4362078/94‑1 (MQ=60)

                                                                                      ACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAG         <  SRR4302533.162769/94‑1 (MQ=60)

                                                                                      ACCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAG         <  SRR4302533.3045006/94‑1 (MQ=60)

                                                                                       CCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGA        >  SRR4302533.2852675/1‑94 (MQ=60)

                                                                                       CCATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGA        <  SRR4302533.5801086/94‑1 (MQ=60)

                                                                                        CATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGAC       >  SRR4302533.931148/1‑94 (MQ=60)

                                                                                         ATGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACC      >  SRR4302533.3062086/1‑94 (MQ=60)

                                                                                          TGGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCG     <  SRR4302533.1813971/94‑1 (MQ=60)

                                                                                           GGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA    >  SRR4302533.3538459/1‑94 (MQ=60)

                                                                                           GGGCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGA    <  SRR4302533.5878536/94‑1 (MQ=60)

                                                                                             GCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGACT  >  SRR4302533.76168/1‑94 (MQ=60)

                                                                                             GCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGACT  <  SRR4302533.5091302/94‑1 (MQ=60)

                                                                                             GCAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGACT  <  SRR4302533.4581314/94‑1 (MQ=60)

TTTTCTACATTTTCAGAGTAACTCCCGTCAGTTGCGAGCAAAAAAGCCGCTACGCTTTAGCTATACGTGCTAATTCAAGAGAAGAGACCATGGACAACGACAAAATTGATCAACACAGCGACGAAATTGAAGTTGAGAGCGAAGAAAAAGAGCGCGGCAAAAAAATAGAAATAGATGAAGACCGACT  >  NC_000913/2463232‑2463418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`