Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,753,655 |
T→C |
intergenic (+256/‑525) |
smpB → / → intA |
small protein B/prophage CP4‑57 integrase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,753,655 | 0 | T | C | 100.0%
| 722.3
/ NA
| 225 | intergenic (+256/‑525) | smpB/intA | small protein B/prophage CP4‑57 integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (101/124); total (101/124) |
Only 100 of 232 total aligned reads displayed.
GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT > NC_000913/2753565‑2753744
|
aGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCa > 2:2241315/1‑93 (MQ=255)
aGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCa > 2:2098698/1‑93 (MQ=255)
ggCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCAt < 2:2002983/93‑1 (MQ=255)
gCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATg < 2:1449398/93‑1 (MQ=255)
gTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGa < 2:4228730/93‑1 (MQ=255)
gTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGa < 1:3367030/93‑1 (MQ=255)
tCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAg > 1:5737011/1‑93 (MQ=255)
cATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgg < 2:3838906/93‑1 (MQ=255)
cATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgg > 2:373305/1‑93 (MQ=255)
aTGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAggg > 1:1439597/1‑93 (MQ=255)
aTGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAggg < 2:1944679/93‑1 (MQ=255)
tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg < 1:4659183/93‑1 (MQ=255)
tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg > 1:6075363/1‑93 (MQ=255)
tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg < 1:2491985/93‑1 (MQ=255)
ggCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGc < 2:903343/93‑1 (MQ=255)
gcTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGt < 1:3964182/93‑1 (MQ=255)
cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt > 1:5257200/1‑93 (MQ=255)
cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt < 2:4121602/93‑1 (MQ=255)
tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg > 1:5373468/1‑93 (MQ=255)
tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg < 1:4869173/93‑1 (MQ=255)
tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg < 1:3337825/93‑1 (MQ=255)
tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg > 2:5448911/1‑93 (MQ=255)
cATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTgg > 2:1520151/1‑93 (MQ=255)
cATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTgc > 1:4023407/1‑92 (MQ=255)
aaaTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCt < 1:938200/93‑1 (MQ=255)
aaTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTc > 1:2890622/1‑93 (MQ=255)
aTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCg > 1:5150398/1‑93 (MQ=255)
aTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCg < 1:4615148/93‑1 (MQ=255)
tCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGt > 1:5947107/1‑93 (MQ=255)
gTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaa < 2:2702222/93‑1 (MQ=255)
tataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaaa < 1:5826318/93‑1 (MQ=255)
ataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAg < 2:4002536/93‑1 (MQ=255)
taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAGAAGc > 1:318608/1‑93 (MQ=255)
taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGc < 2:6079169/93‑1 (MQ=255)
taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGc > 1:2098612/1‑93 (MQ=255)
tcTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGcc < 1:4353444/92‑1 (MQ=255)
aCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGcc < 2:1874062/93‑1 (MQ=255)
cTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCg > 2:5726187/1‑93 (MQ=255)
cTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCg > 1:4964094/1‑93 (MQ=255)
cTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCg > 2:3593410/1‑93 (MQ=255)
tACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCTGCa > 1:5428386/1‑93 (MQ=255)
tACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCa < 1:1739348/93‑1 (MQ=255)
tACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCa > 1:2029963/1‑93 (MQ=255)
aCCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaa > 2:2990300/1‑93 (MQ=255)
ccTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaa > 1:1461423/1‑93 (MQ=255)
cTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaa > 2:3455539/1‑93 (MQ=255)
cTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaa < 1:185224/93‑1 (MQ=255)
cTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaa > 1:1280351/1‑93 (MQ=255)
tttACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaaa > 2:883021/1‑93 (MQ=255)
tttACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACACAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAGAAGCCGCaaaaa > 1:1078653/1‑93 (MQ=255)
tACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAt < 2:799201/93‑1 (MQ=255)
tACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAt > 1:2948472/1‑93 (MQ=255)
acacATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa > 1:3909897/1‑93 (MQ=255)
acacATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa < 1:717768/93‑1 (MQ=255)
acacATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa > 1:4122795/1‑93 (MQ=255)
acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt < 2:5128291/93‑1 (MQ=255)
acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt < 1:4466659/93‑1 (MQ=255)
caTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAACCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTc < 1:4839203/93‑1 (MQ=255)
caTTGGGGCTGATTCTGGATTCGACGCGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAgcc < 2:3974043/93‑3 (MQ=255)
caTGGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTc < 2:2477789/93‑1 (MQ=255)
aTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAACAATAGTCg > 2:5333991/1‑93 (MQ=255)
ttGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGc > 2:5030184/1‑93 (MQ=255)
tGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCa < 2:2150026/93‑1 (MQ=255)
gggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCaaa < 1:3539041/93‑1 (MQ=255)
ggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAac > 1:2425183/1‑93 (MQ=255)
ggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGACTCGTAAAAAGCCGCAAAAAATAGTCGCAAac > 2:3269151/1‑93 (MQ=255)
gCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacg < 2:5159812/93‑1 (MQ=255)
gtGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacga < 2:3278566/92‑1 (MQ=255)
cTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacga < 1:3781595/93‑1 (MQ=255)
tGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgac > 2:3496688/1‑93 (MQ=255)
gATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgacg > 1:3481534/1‑93 (MQ=255)
tGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAc > 1:1563362/1‑93 (MQ=255)
tGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAc > 2:4269538/1‑93 (MQ=255)
gATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTa < 1:2794935/93‑1 (MQ=255)
aTTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTAc > 1:4703132/1‑93 (MQ=255)
aTTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGACGCAAACGACGAAAACTAc < 2:6133637/93‑1 (MQ=255)
tgcGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACg < 2:2408270/91‑1 (MQ=255)
tCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGc < 2:4783570/93‑1 (MQ=255)
aCGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCCAAAAATAGTCGCAAACGACGAAAACTACGCttt > 1:2411306/1‑93 (MQ=255)
aCGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCttt > 2:6237500/1‑93 (MQ=255)
cGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTa > 1:2262530/1‑93 (MQ=255)
cGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTa < 1:5586332/93‑1 (MQ=255)
gggATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTag > 1:3177730/1‑93 (MQ=255)
ggATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagc > 1:3603650/1‑93 (MQ=255)
gATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagca < 2:4701037/93‑1 (MQ=255)
tttGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagcagc > 1:4772574/1‑93 (MQ=255)
ttGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCt < 2:1575381/93‑1 (MQ=255)
cGAAGCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaa < 1:1759080/93‑1 (MQ=255)
cGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaa > 1:2729904/1‑93 (MQ=255)
gAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaat < 2:4958626/93‑1 (MQ=255)
gAAACCCAAGGCGCATGCCGAGGGGCGGTGGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaat < 1:1018619/93‑1 (MQ=255)
aCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAc < 1:1202966/93‑1 (MQ=255)
cccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAcc > 2:1314002/1‑93 (MQ=255)
cccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAcc < 2:3222691/93‑1 (MQ=255)
ccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCt < 1:2990300/93‑1 (MQ=255)
cAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTg > 2:438570/1‑93 (MQ=255)
cAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTg < 2:1083150/93‑1 (MQ=255)
aaGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGc > 1:5686980/1‑93 (MQ=255)
aGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCt < 2:1832777/93‑1 (MQ=255)
aGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCt > 1:6200081/1‑93 (MQ=255)
|
GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT > NC_000913/2753565‑2753744
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGA > NC_000913/2753562‑2753748
|
ATTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGC < SRR4302533.5908671/94‑1 (MQ=60)
ATTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAAACCAAGGC > SRR4302533.2738139/1‑94 (MQ=60)
TTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCG < SRR4302533.5773515/94‑1 (MQ=60)
TTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCG < SRR4302533.4405301/94‑1 (MQ=60)
TTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCG < SRR4302533.1100875/94‑1 (MQ=60)
GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCA < SRR4302533.4870000/94‑1 (MQ=60)
AGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCAT > SRR4302533.5481964/1‑94 (MQ=60)
AGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCAT < SRR4302533.3445753/94‑1 (MQ=60)
GGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATG < SRR4302533.961890/94‑1 (MQ=60)
GCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGC < SRR4302533.3006538/94‑1 (MQ=60)
GCTGGTCATGGCGATCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGC < SRR4302533.3623655/94‑1 (MQ=60)
TGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCG > SRR4302533.493435/1‑94 (MQ=60)
GGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGACGA > SRR4302533.5888212/1‑94 (MQ=60)
GTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAG < SRR4302533.3387826/94‑1 (MQ=60)
GTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAG > SRR4302533.5771639/1‑94 (MQ=60)
CATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGG < SRR4302533.1379073/94‑1 (MQ=60)
CATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGG > SRR4302533.1448285/1‑94 (MQ=60)
CATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGG < SRR4302533.4648299/94‑1 (MQ=60)
CATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGG > SRR4302533.225126/1‑94 (MQ=60)
ATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGG > SRR4302533.6112111/1‑94 (MQ=60)
TGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGC < SRR4302533.4687417/94‑1 (MQ=60)
TGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGC < SRR4302533.2507333/94‑1 (MQ=60)
GGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCG < SRR4302533.6234520/94‑1 (MQ=60)
GCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGG < SRR4302533.3963107/94‑1 (MQ=60)
CGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGT < SRR4302533.5453046/94‑1 (MQ=60)
CGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGT > SRR4302533.1306063/1‑94 (MQ=60)
GCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTT < SRR4302533.4131486/94‑1 (MQ=60)
GCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTT < SRR4302533.570157/94‑1 (MQ=60)
GCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTT < SRR4302533.5202767/94‑1 (MQ=60)
GCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTT > SRR4302533.5288771/1‑94 (MQ=60)
GCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTT < SRR4302533.3988331/94‑1 (MQ=60)
CTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTG < SRR4302533.3198642/94‑1 (MQ=60)
CTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTG < SRR4302533.5322898/94‑1 (MQ=60)
CTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTG > SRR4302533.5405756/1‑94 (MQ=60)
TCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGG < SRR4302533.3358455/94‑1 (MQ=60)
TCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGG < SRR4302533.4898675/94‑1 (MQ=60)
TCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGC > SRR4302533.4047902/1‑94 (MQ=60)
CATAAATCTGGTATACTTCCCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGC < SRR4302533.2306794/94‑1 (MQ=60)
ATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCC > SRR4302533.5365947/1‑94 (MQ=60)
ATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCC > SRR4302533.205515/1‑94 (MQ=60)
TAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCT < SRR4302533.1228419/94‑1 (MQ=60)
AAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTC > SRR4302533.2908391/1‑94 (MQ=60)
AAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTC < SRR4302533.943711/94‑1 (MQ=60)
AATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCG > SRR4302533.5181512/1‑94 (MQ=60)
AATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCG > SRR4302533.2433961/1‑94 (MQ=60)
ATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGT > SRR4302533.5983076/1‑94 (MQ=60)
ATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGT < SRR4302533.4643099/94‑1 (MQ=60)
CTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAA > SRR4302533.2740348/1‑94 (MQ=60)
CTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAA < SRR4302533.2737982/94‑1 (MQ=60)
TATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAG < SRR4302533.5861524/94‑1 (MQ=60)
TATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAG < SRR4302533.3990068/94‑1 (MQ=60)
ATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAGAAGC > SRR4302533.320561/1‑94 (MQ=60)
ATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGC > SRR4302533.2111559/1‑94 (MQ=60)
ATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGC > SRR4302533.6045072/1‑94 (MQ=60)
TCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCG < SRR4302533.4379720/94‑1 (MQ=60)
ACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCG > SRR4302533.4994188/1‑94 (MQ=60)
CTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGC < SRR4302533.4548732/94‑1 (MQ=60)
CTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGC > SRR4302533.1764322/1‑94 (MQ=60)
TTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCTGCA > SRR4302533.5461079/1‑94 (MQ=60)
TTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCA > SRR4302533.4163387/1‑94 (MQ=60)
TTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCA > SRR4302533.2042492/1‑94 (MQ=60)
TACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAA > SRR4302533.320444/1‑94 (MQ=60)
TACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAA < SRR4302533.1749896/94‑1 (MQ=60)
ACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAA > SRR4302533.1470233/1‑94 (MQ=60)
CCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAA > SRR4302533.1288048/1‑94 (MQ=60)
CTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAA > SRR4302533.5734609/1‑94 (MQ=60)
CTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAA < SRR4302533.186373/94‑1 (MQ=60)
CTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACACAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAGAAGCCGCAAAAA > SRR4302533.1085010/1‑94 (MQ=60)
TTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAT < SRR4302533.3384767/94‑1 (MQ=60)
TTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAT > SRR4302533.2966505/1‑94 (MQ=60)
TACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATA > SRR4302533.4147827/1‑94 (MQ=60)
TACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATA > SRR4302533.1878913/1‑94 (MQ=60)
TACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATA > SRR4302533.3933775/1‑94 (MQ=60)
ACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAG < SRR4302533.3532909/94‑1 (MQ=60)
ACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAG < SRR4302533.722005/94‑1 (MQ=60)
ACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTC < SRR4302533.4493672/94‑1 (MQ=60)
ACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTC < SRR4302533.5659879/94‑1 (MQ=60)
ACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTC < SRR4302533.4638897/94‑1 (MQ=60)
CATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAACCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCG < SRR4302533.4868534/94‑1 (MQ=60)
CATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCG > SRR4302533.472947/1‑94 (MQ=60)
ATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGC < SRR4302533.1059160/94‑1 (MQ=60)
GGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAAC < SRR4302533.1736311/94‑1 (MQ=60)
GGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAAC < SRR4302533.3560849/94‑1 (MQ=60)
GGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAAC > SRR4302533.2440155/1‑94 (MQ=60)
GCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGA > SRR4302533.2359746/1‑94 (MQ=60)
CTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGAC < SRR4302533.3804757/94‑1 (MQ=60)
CTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGAC < SRR4302533.2962565/94‑1 (MQ=60)
TGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACG < SRR4302533.5935169/94‑1 (MQ=60)
TGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACG > SRR4302533.3503009/1‑94 (MQ=60)
ATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAA > SRR4302533.1556603/1‑94 (MQ=60)
TTCTGGATTCGACGGGATTTGCGAACCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAA < SRR4302533.5013415/94‑1 (MQ=60)
CTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAC > SRR4302533.1572773/1‑94 (MQ=60)
CTGGATTCAACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAC > SRR4302533.876424/1‑94 (MQ=60)
GGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTA < SRR4302533.3909477/94‑1 (MQ=60)
GATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTAC > SRR4302533.4731643/1‑94 (MQ=60)
GATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTAC < SRR4302533.2812123/94‑1 (MQ=60)
GATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTAC < SRR4302533.2812124/94‑1 (MQ=60)
ATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCGCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACG < SRR4302533.3412440/94‑1 (MQ=60)
GACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCCAAAAATAGTCGCAAACGACGAAAACTACGCTTT > SRR4302533.2426199/1‑94 (MQ=60)
GACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTT > SRR4302533.658631/1‑94 (MQ=60)
GACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTT > SRR4302533.2893777/1‑94 (MQ=60)
GACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTT < SRR4302533.1836973/94‑1 (MQ=60)
ACTGGATTTGCGAAACCCAAGGCGCATGCCGAGTGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTA < SRR4302533.445185/94‑1 (MQ=60)
ACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTA < SRR4302533.4135111/94‑1 (MQ=60)
ACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTA > SRR4302533.2276525/1‑94 (MQ=60)
ACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTA > SRR4302533.820777/1‑94 (MQ=60)
CGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAG > SRR4302533.3197274/1‑94 (MQ=60)
CGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAG < SRR4302533.5620086/94‑1 (MQ=60)
CGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAG > SRR4302533.3774192/1‑94 (MQ=60)
GGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGC > SRR4302533.3625829/1‑94 (MQ=60)
GATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAG > SRR4302533.1098994/1‑94 (MQ=60)
ATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGC < SRR4302533.4948701/94‑1 (MQ=60)
ATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGC > SRR4302533.4801497/1‑94 (MQ=60)
TTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTT > SRR4302533.1983420/1‑94 (MQ=60)
TGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTA < SRR4302533.584517/94‑1 (MQ=60)
GCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAA > SRR4302533.2746647/1‑94 (MQ=60)
CGAAGCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAAT < SRR4302533.1769803/94‑1 (MQ=60)
GAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATA < SRR4302533.4865388/94‑1 (MQ=60)
GAAACCCAAGGCGCATGCCGAGGGGCGGTGGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATA < SRR4302533.1024608/94‑1 (MQ=60)
AACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAC < SRR4302533.4777422/94‑1 (MQ=60)
AACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAC > SRR4302533.3277492/1‑94 (MQ=60)
ACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACC < SRR4302533.3921259/94‑1 (MQ=60)
ACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACC < SRR4302533.1210195/94‑1 (MQ=60)
ACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACC < SRR4302533.3088544/94‑1 (MQ=60)
CCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCT < SRR4302533.2494719/94‑1 (MQ=60)
CCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCT < SRR4302533.4763609/94‑1 (MQ=60)
CCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTG < SRR4302533.1708684/94‑1 (MQ=60)
CCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTG < SRR4302533.3008589/94‑1 (MQ=60)
CAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGC > SRR4302533.1469410/1‑94 (MQ=60)
CAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGC < SRR4302533.2924753/94‑1 (MQ=60)
CAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGC > SRR4302533.5721331/1‑94 (MQ=60)
AAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT > SRR4302533.6237272/1‑94 (MQ=60)
GCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAG < SRR4302533.2696622/94‑1 (MQ=60)
GCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAG < SRR4302533.3840737/94‑1 (MQ=60)
CGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGA < SRR4302533.4849276/94‑1 (MQ=60)
CGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGA < SRR4302533.370519/94‑1 (MQ=60)
|
ATTGAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGA > NC_000913/2753562‑2753748
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
