Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,896,819	+C	coding (622/657 nt)	ygcU ←	putative oxidoreductase subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,896,818	1	.	C	99.5%	675.5 / ‑5.6	211	A208G (GCA→GGA)	ygcU	putative oxidoreductase subunit
Reads supporting (aligned to +/- strand): ref base . (0/0); major base C (124/86); minor base T (1/0); total (125/86)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 230 total aligned reads displayed.

TCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCT  >  NC_000913/2896726‑2896904

  cAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑cc                                                                                      <  1:784841/93‑2 (MQ=255)

  cAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑cc                                                                                      >  2:1738589/1‑92 (MQ=255)

    ggATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑ccga                                                                                    <  2:3731440/93‑4 (MQ=255)

    ggATATAGCCGTAGAAGAGGTTGCTTTCCGGGGTGAATTTAAAGAATTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑ccga                                                                                    >  2:5058673/1‑90 (MQ=255)

     gATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑ccgat                                                                                   >  2:6178179/1‑89 (MQ=255)

     gATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑ccgat                                                                                   <  2:1628198/93‑5 (MQ=255)

       tataGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCgatga                                                                                  >  2:4165669/1‑93 (MQ=255)

       tataGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCgatga                                                                                  >  2:4087192/1‑93 (MQ=255)

         taGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCgatgatg                                                                                >  2:5490189/1‑93 (MQ=255)

           gCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCgatgatgat                                                                              <  2:1614221/93‑1 (MQ=255)

           gCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCgatgatgat                                                                              <  2:390820/93‑1 (MQ=255)

            ccGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGatgatgatg                                                                             >  1:4276873/1‑93 (MQ=255)

             cGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGAtgt                                                                            <  1:1512251/93‑1 (MQ=255)

             cGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGAtgt                                                                            <  1:242596/93‑1 (MQ=255)

              gTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGAtgtg                                                                           <  1:5083350/93‑1 (MQ=255)

              gTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGAtgtg                                                                           >  1:4336950/1‑93 (MQ=255)

               tAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGa                                                                          >  1:1015829/1‑93 (MQ=255)

               tAGAAGAGGTTGTTTACCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGa                                                                          <  2:6308222/93‑1 (MQ=255)

                agaagaGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGAc                                                                         >  1:2077369/1‑93 (MQ=255)

                agaagaGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGAGGATGTGag                                                                         >  1:1132502/1‑92 (MQ=255)

                   agagGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGaa                                                                      >  2:1949164/1‑93 (MQ=255)

                     agGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATg                                                                    <  2:2476556/93‑1 (MQ=255)

                      ggTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGt                                                                   >  2:5912808/1‑93 (MQ=255)

                        ttgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTcc                                                                 >  1:905408/1‑93 (MQ=255)

                        ttgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTcc                                                                 >  1:6146481/1‑93 (MQ=255)

                         tgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCg                                                                <  1:6226473/93‑1 (MQ=255)

                          gttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCgg                                                               <  1:3966630/93‑1 (MQ=255)

                          gttTTCCGAGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCgg                                                               <  2:5126076/93‑1 (MQ=255)

                           ttttCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCggg                                                              >  1:4679155/1‑93 (MQ=255)

                             ttCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGcc                                                            <  1:5326925/93‑1 (MQ=255)

                              tCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCa                                                           >  2:3259120/1‑93 (MQ=255)

                                cGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAAGGCACCTTCGTTTC‑CGATGATGATGTGTCGAATGTCCGGGCCAGc                                                         <  2:4464002/93‑1 (MQ=255)

                                 ggggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGcc                                                        >  1:2215947/1‑93 (MQ=255)

                                 ggggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGcc                                                        >  2:4780656/1‑93 (MQ=255)

                                 ggggAGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGcc                                                        >  1:5658573/1‑93 (MQ=255)

                                  gggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcg                                                       >  2:6151095/1‑93 (MQ=255)

                                  gggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcg                                                       >  2:4023616/1‑93 (MQ=255)

                                   ggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgc                                                      >  2:4319000/1‑93 (MQ=255)

                                     tGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgcgc                                                    <  2:2961432/93‑1 (MQ=255)

                                     tGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgcgc                                                    <  1:4685125/93‑1 (MQ=255)

                                        aTTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                                 >  2:3174896/1‑93 (MQ=255)

                                        aTTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                                 <  1:1438144/93‑1 (MQ=255)

                                        aTTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                                 <  1:3186346/93‑1 (MQ=255)

                                         tttAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggcg                                                >  2:3057542/1‑93 (MQ=255)

                                           tAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTg                                              >  1:4081693/1‑93 (MQ=255)

                                           tAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTg                                              >  1:2296946/1‑93 (MQ=255)

                                              aGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCa                                           <  1:1838300/93‑1 (MQ=255)

                                                aTTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACg                                         >  2:1461021/1‑93 (MQ=255)

                                                 ttttCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGt                                        >  1:5743714/1‑93 (MQ=255)

                                                  tttCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGtt                                       <  2:5832869/93‑1 (MQ=255)

                                                    tCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGtttt                                     <  2:3427239/93‑1 (MQ=255)

                                                     cACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGttttt                                    >  1:3136968/1‑93 (MQ=255)

                                                      aCTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTa                                   >  2:3366041/1‑93 (MQ=255)

                                                      aCTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTa                                   >  2:6055674/1‑93 (MQ=255)

                                                       cTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTaa                                  <  2:4789202/93‑1 (MQ=255)

                                                       cTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTaa                                  <  1:3969403/93‑1 (MQ=255)

                                                        tGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAt                                 >  2:346836/1‑93 (MQ=255)

                                                        tGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAt                                 >  2:5308827/1‑93 (MQ=255)

                                                         gTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATg                                <  2:4134875/93‑1 (MQ=255)

                                                          ttACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGc                               <  2:4944713/93‑1 (MQ=255)

                                                           tACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCg                              >  2:5165925/1‑93 (MQ=255)

                                                           tACTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCg                              >  1:1216193/1‑93 (MQ=255)

                                                            aCTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgt                             <  2:6049382/93‑1 (MQ=255)

                                                            aCTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgt                             <  1:3259900/93‑1 (MQ=255)

                                                             cTTCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtg                            >  2:5627119/1‑93 (MQ=255)

                                                              ttCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtgt                           >  1:3820913/1‑93 (MQ=255)

                                                               tCAGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGtgtg                          >  2:4901360/1‑93 (MQ=255)

                                                                 aGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc                        >  1:2950244/1‑93 (MQ=255)

                                                                 aGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc                        >  1:3515240/1‑93 (MQ=255)

                                                                 aGTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc                        >  2:5226565/1‑93 (MQ=255)

                                                                  gTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACg                       >  1:176242/1‑93 (MQ=255)

                                                                  gTGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACg                       <  1:1625988/93‑1 (MQ=255)

                                                                   tGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACgg                      >  2:2172115/1‑93 (MQ=255)

                                                                   tGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACgg                      <  1:2322584/93‑1 (MQ=255)

                                                                   tGATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACgg                      <  1:6099889/93‑1 (MQ=255)

                                                                    gATATAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGt                     >  2:4414495/1‑93 (MQ=255)

                                                                     atatAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTg                    >  1:2206687/1‑93 (MQ=255)

                                                                     atatAGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTg                    >  1:2614159/1‑93 (MQ=255)

                                                                      tataGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc                   >  2:3583661/1‑93 (MQ=255)

                                                                      tataGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc                   >  1:5624581/1‑93 (MQ=255)

                                                                      tataGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc                   >  1:1292232/1‑93 (MQ=255)

                                                                      tataGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc                   >  2:1320068/1‑93 (MQ=255)

                                                                      tataGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGAGTGTGACGGTGc                   >  2:2772741/1‑93 (MQ=255)

                                                                       ataGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGcc                  >  2:2345600/1‑93 (MQ=255)

                                                                         aGCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCAt                >  1:2749921/1‑93 (MQ=255)

                                                                          gCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATc               <  1:1913610/93‑1 (MQ=255)

                                                                          gCACAATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATc               <  1:2997783/93‑1 (MQ=255)

                                                                            acaATGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAg             >  2:2268309/1‑93 (MQ=255)

                                                                              aaTGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGcc           >  2:2674862/1‑93 (MQ=255)

                                                                               aTGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCa          >  2:537439/1‑93 (MQ=255)

                                                                               aTGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCa          >  1:1482476/1‑93 (MQ=255)

                                                                                tGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCaa         >  1:3739192/1‑93 (MQ=255)

                                                                                tGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCaa         >  2:4690817/1‑93 (MQ=255)

                                                                                tGCACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCaa         <  1:848167/93‑1 (MQ=255)

                                                                                  cACCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATa       >  2:1523692/1‑93 (MQ=255)

                                                                                   aCCTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATAc      >  1:6030118/1‑93 (MQ=255)

                                                                                    ccTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACt     <  1:5179835/93‑1 (MQ=255)

                                                                                    ccTTCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACt     >  2:1895154/1‑93 (MQ=255)

                                                                                      ttCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGc   <  2:5988944/93‑1 (MQ=255)

                                                                                       tCG‑TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCt  <  2:1416248/93‑1 (MQ=255)

TCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCG‑TTG‑CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCT  >  NC_000913/2896726‑2896904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACC  >  NC_000913/2896728‑2896912

CAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑Ccg                                                                                             <  SRR4302533.789459/94‑3 (MQ=60)

 AGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑Ccga                                                                                            >  SRR4302533.6169522/1‑91 (MQ=60)

 AGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑Ccga                                                                                            >  SRR4302533.1855543/1‑91 (MQ=60)

  GGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGAT                                                                                            <  SRR4302533.6209023/94‑1 (MQ=60)

   GATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATG                                                                                           >  SRR4302533.6152675/1‑94 (MQ=60)

    ATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGA                                                                                          <  SRR4302533.1163650/94‑1 (MQ=60)

    ATATAGCCGTAGAAGAGGTTGTTTTCCGGGGCGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGA                                                                                          >  SRR4302533.2977365/1‑94 (MQ=60)

     TATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGAT                                                                                         <  SRR4302533.2449748/94‑1 (MQ=60)

      ATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATG                                                                                        >  SRR4302533.2050362/1‑94 (MQ=60)

        AGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGAT                                                                                      <  SRR4302533.891082/94‑1 (MQ=60)

         GCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATG                                                                                     >  SRR4302533.4302594/1‑94 (MQ=60)

           CGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTG                                                                                   >  SRR4302533.4363087/1‑94 (MQ=60)

           CGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTG                                                                                   <  SRR4302533.244100/94‑1 (MQ=60)

           CGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTG                                                                                   <  SRR4302533.1521364/94‑1 (MQ=60)

            GTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGA                                                                                  >  SRR4302533.1021798/1‑94 (MQ=60)

            GTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGA                                                                                  <  SRR4302533.5114073/94‑1 (MQ=60)

             TAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGAC                                                                                 >  SRR4302533.2090154/1‑94 (MQ=60)

             TAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGAGGATGTGAG                                                                                 >  SRR4302533.1139234/1‑94 (MQ=60)

               GAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGA                                                                               <  SRR4302533.2660851/94‑1 (MQ=60)

                 AGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAAT                                                                             >  SRR4302533.2137935/1‑94 (MQ=60)

                   AGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGT                                                                           <  SRR4302533.335640/94‑1 (MQ=60)

                   AGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGT                                                                           <  SRR4302533.4181884/94‑1 (MQ=60)

                    GGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTC                                                                          <  SRR4302533.1627732/94‑1 (MQ=60)

                     GTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCC                                                                         >  SRR4302533.910714/1‑94 (MQ=60)

                     GTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCC                                                                         >  SRR4302533.6183486/1‑94 (MQ=60)

                       TGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGG                                                                       <  SRR4302533.6263775/94‑1 (MQ=60)

                       TGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGG                                                                       <  SRR4302533.5535885/94‑1 (MQ=60)

                        GTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGG                                                                      >  SRR4302533.4707513/1‑94 (MQ=60)

                        GTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGG                                                                      <  SRR4302533.3990976/94‑1 (MQ=60)

                        GTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGG                                                                      <  SRR4302533.3990793/94‑1 (MQ=60)

                           TTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCA                                                                   <  SRR4302533.5147240/94‑1 (MQ=60)

                           TTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCA                                                                   <  SRR4302533.5358847/94‑1 (MQ=60)

                              CGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCC                                                                >  SRR4302533.2229627/1‑94 (MQ=60)

                              CGGGGAGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCC                                                                >  SRR4302533.5692765/1‑94 (MQ=60)

                                 GGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCG                                                             >  SRR4302533.4047375/1‑94 (MQ=60)

                                   TGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACCATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCG                                                           >  SRR4302533.2431656/1‑94 (MQ=60)

                                   TGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCG                                                           >  SRR4302533.2220805/1‑94 (MQ=60)

                                   TGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCG                                                           <  SRR4302533.4713507/94‑1 (MQ=60)

                                   TGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCG                                                           >  SRR4302533.2286474/1‑94 (MQ=60)

                                     AATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGCATGTCCGGGCCAGCCGCGCGGC                                                         <  SRR4302533.5226371/94‑1 (MQ=60)

                                      ATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCG                                                        >  SRR4302533.2336440/1‑94 (MQ=60)

                                      ATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCG                                                        >  SRR4302533.4530177/1‑94 (MQ=60)

                                      ATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCG                                                        >  SRR4302533.4708845/1‑94 (MQ=60)

                                      ATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCG                                                        <  SRR4302533.3800973/94‑1 (MQ=60)

                                      ATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCG                                                        <  SRR4302533.3205946/94‑1 (MQ=60)

                                      ATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCG                                                        <  SRR4302533.1446824/94‑1 (MQ=60)

                                       TTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGT                                                       <  SRR4302533.2870291/94‑1 (MQ=60)

                                       TTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGT                                                       >  SRR4302533.3972357/1‑94 (MQ=60)

                                       TTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGT                                                       <  SRR4302533.2232383/94‑1 (MQ=60)

                                        TTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTG                                                      <  SRR4302533.1869170/94‑1 (MQ=60)

                                        TTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTG                                                      >  SRR4302533.4106541/1‑94 (MQ=60)

                                        TTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTG                                                      >  SRR4302533.6324767/1‑94 (MQ=60)

                                        TTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTG                                                      >  SRR4302533.2311171/1‑94 (MQ=60)

                                         TAAAGAATTTCACTTCTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGG                                                     <  SRR4302533.1693214/94‑1 (MQ=60)

                                           AAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCA                                                   >  SRR4302533.841636/1‑94 (MQ=60)

                                            AGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCAC                                                  <  SRR4302533.1849511/94‑1 (MQ=60)

                                              ATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGT                                                >  SRR4302533.5778374/1‑94 (MQ=60)

                                                  TCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTT                                            >  SRR4302533.3156255/1‑94 (MQ=60)

                                                   CACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTA                                           <  SRR4302533.4353393/94‑1 (MQ=60)

                                                     CTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAT                                         >  SRR4302533.3168013/1‑94 (MQ=60)

                                                     CTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAT                                         <  SRR4302533.2499617/94‑1 (MQ=60)

                                                     CTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAT                                         <  SRR4302533.3235724/94‑1 (MQ=60)

                                                     CTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAT                                         <  SRR4302533.3993580/94‑1 (MQ=60)

                                                       GTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGC                                       >  SRR4302533.3510331/1‑94 (MQ=60)

                                                       GTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGC                                       >  SRR4302533.1319383/1‑94 (MQ=60)

                                                        TTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCG                                      >  SRR4302533.1223498/1‑94 (MQ=60)

                                                          ACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTG                                    <  SRR4302533.3280009/94‑1 (MQ=60)

                                                           CTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGT                                   >  SRR4302533.663200/1‑94 (MQ=60)

                                                           CTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGT                                   >  SRR4302533.3844277/1‑94 (MQ=60)

                                                             TCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGA                                 >  SRR4302533.1502527/1‑94 (MQ=60)

                                                             TCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGA                                 >  SRR4302533.3544534/1‑94 (MQ=60)

                                                              CAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAC                                <  SRR4302533.39855/94‑1 (MQ=60)

                                                              CAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAC                                <  SRR4302533.1280574/94‑1 (MQ=60)

                                                              CAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAC                                >  SRR4302533.2968285/1‑94 (MQ=60)

                                                              CAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAC                                >  SRR4302533.3536905/1‑94 (MQ=60)

                                                               AGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACG                               <  SRR4302533.1389082/94‑1 (MQ=60)

                                                               AGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACG                               >  SRR4302533.177350/1‑94 (MQ=60)

                                                                GTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGG                              <  SRR4302533.1635837/94‑1 (MQ=60)

                                                                 TGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGTCACGTTTTTAATGCGTGTGACGGT                             <  SRR4302533.1483646/94‑1 (MQ=60)

                                                                 TGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGT                             <  SRR4302533.2336957/94‑1 (MQ=60)

                                                                 TGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGT                             >  SRR4302533.4964621/1‑94 (MQ=60)

                                                                 TGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGT                             >  SRR4302533.5031960/1‑94 (MQ=60)

                                                                 TGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGT                             <  SRR4302533.6136726/94‑1 (MQ=60)

                                                                  GATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTG                            >  SRR4302533.2220294/1‑94 (MQ=60)

                                                                  GATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTG                            >  SRR4302533.2630205/1‑94 (MQ=60)

                                                                   ATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGC                           >  SRR4302533.5658577/1‑94 (MQ=60)

                                                                   ATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGC                           >  SRR4302533.1300015/1‑94 (MQ=60)

                                                                     ATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCA                         >  SRR4302533.179605/1‑94 (MQ=60)

                                                                      TAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCAT                        >  SRR4302533.2766780/1‑94 (MQ=60)

                                                                        GCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTTACGGTGCCATCA                      <  SRR4302533.156308/94‑1 (MQ=60)

                                                                        GCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCA                      <  SRR4302533.3016112/94‑1 (MQ=60)

                                                                        GCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCA                      >  SRR4302533.6113797/1‑94 (MQ=60)

                                                                        GCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCA                      <  SRR4302533.1925286/94‑1 (MQ=60)

                                                                         CACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAG                     >  SRR4302533.106646/1‑94 (MQ=60)

                                                                         CACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAG                     >  SRR4302533.5775152/1‑94 (MQ=60)

                                                                          ACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGC                    >  SRR4302533.5873914/1‑94 (MQ=60)

                                                                          ACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGC                    >  SRR4302533.1169321/1‑94 (MQ=60)

                                                                            AATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCA                  >  SRR4302533.1491426/1‑94 (MQ=60)

                                                                             ATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAA                 >  SRR4302533.3762126/1‑94 (MQ=60)

                                                                              TGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAAT                <  SRR4302533.853131/94‑1 (MQ=60)

                                                                                CACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATAC              >  SRR4302533.2982509/1‑94 (MQ=60)

                                                                                CACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATAC              >  SRR4302533.6066664/1‑94 (MQ=60)

                                                                                CACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATAC              <  SRR4302533.3106617/94‑1 (MQ=60)

                                                                                 ACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACT             >  SRR4302533.5824405/1‑94 (MQ=60)

                                                                                  CCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTG            <  SRR4302533.5211116/94‑1 (MQ=60)

                                                                                    TTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCT          <  SRR4302533.5659758/94‑1 (MQ=60)

                                                                                     TCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTT         <  SRR4302533.5471131/94‑1 (MQ=60)

                                                                                       GTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCC       <  SRR4302533.3812720/94‑1 (MQ=60)

                                                                                       GTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCC       >  SRR4302533.4129428/1‑94 (MQ=60)

                                                                                       GTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCC       >  SRR4302533.37097/1‑94 (MQ=60)

                                                                                       GTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCC       >  SRR4302533.5690183/1‑94 (MQ=60)

                                                                                        TTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCA      <  SRR4302533.2428835/94‑1 (MQ=60)

                                                                                         tgcCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAG     >  SRR4302533.4092492/4‑94 (MQ=60)

                                                                                         tgcCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAG     <  SRR4302533.5652522/91‑1 (MQ=60)

                                                                                          gcCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGA    <  SRR4302533.976327/92‑1 (MQ=60)

                                                                                          gcCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGA    >  SRR4302533.4056160/3‑94 (MQ=60)

                                                                                            CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGGACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACC  >  SRR4302533.4463590/1‑94 (MQ=60)

CAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACC  >  NC_000913/2896728‑2896912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`