Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,411 |
+C |
coding (494/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,410 | 1 | . | C | 100.0%
| 297.6
/ NA
| 92 | A165P (GCT→CCT) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (40/52); total (40/52) |
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑G‑CTGCATTATGGGCAGTGGC > NC_000913/4008346‑4008492
|
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt > 2:5367497/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt < 1:3067422/93‑1 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt < 1:3423220/93‑2 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt > 2:2690426/1‑92 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt > 2:2607369/1‑92 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:5995372/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:4708075/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:5951006/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:1156237/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg < 1:1051706/93‑3 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg > 2:630739/1‑90 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:5970655/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:349093/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 1:100493/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAAGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa > 2:6045798/1‑93 (MQ=255)
ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:2148939/93‑1 (MQ=255)
ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAAACCG‑GGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:1686766/93‑1 (MQ=255)
gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg < 2:2236559/93‑1 (MQ=255)
gcgggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg < 2:790947/93‑1 (MQ=255)
cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGa < 1:5478423/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 1:2635131/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 2:3445771/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac > 1:3993000/1‑93 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 2:2772791/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 2:331868/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 1:4957056/93‑1 (MQ=255)
gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg < 1:2957114/93‑1 (MQ=255)
gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg > 1:4814006/1‑93 (MQ=255)
cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga < 1:2546223/93‑1 (MQ=255)
cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga < 2:2166732/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAacgac > 2:5773184/1‑93 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:3119511/1‑93 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:4279944/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:4498313/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:5281397/1‑93 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 2:4300379/1‑93 (MQ=255)
cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc > 2:5938791/1‑93 (MQ=255)
gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc < 2:4808827/93‑1 (MQ=255)
gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc < 1:4418546/93‑1 (MQ=255)
ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa < 2:2580522/89‑1 (MQ=255)
ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa > 1:6270373/5‑93 (MQ=255)
ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa > 2:5932837/5‑93 (MQ=255)
tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaa > 2:476989/4‑93 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 2:723500/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 2:808001/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:4553544/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa > 1:4825534/3‑93 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:5766444/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa > 1:4825533/3‑93 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:3434171/91‑1 (MQ=255)
caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa < 1:995345/91‑1 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:4130459/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:3678743/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 1:5825289/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt < 2:2946514/92‑1 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:1526869/2‑93 (MQ=255)
aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGCAATg > 2:2085646/1‑93 (MQ=255)
aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATg > 1:290367/1‑93 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc < 1:2935716/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc > 2:3848605/1‑93 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc < 1:6192030/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:3735094/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:1197056/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:6045723/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 2:193059/93‑1 (MQ=255)
ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:5385678/93‑1 (MQ=255)
ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:241840/93‑1 (MQ=255)
ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 2:2269624/93‑1 (MQ=255)
ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:4092752/93‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg < 1:1993023/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg < 1:2656113/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg > 1:2688598/5‑93 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg > 2:5517684/5‑93 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAA‑GTCTGCATTATggg > 1:3118034/5‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc < 2:1450881/90‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc > 2:5902450/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc < 1:844949/90‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc > 2:2214314/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc < 1:4035461/90‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc > 1:4618390/4‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCa > 1:1750273/3‑93 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAg < 2:5597564/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAg > 2:2095688/2‑93 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGt < 2:236929/93‑1 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGt > 1:1525946/1‑93 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGt < 2:3176408/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc > 1:720482/1‑92 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc < 2:2350087/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc > 1:6162543/1‑92 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc < 2:3528898/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc < 2:6200703/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc < 1:5539427/93‑2 (MQ=255)
tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgcg > 2:2417089/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgcg > 1:5748970/1‑91 (MQ=255)
|
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑G‑CTGCATTATGGGCAGTGGC > NC_000913/4008346‑4008492
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCAAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAAG‑CTGCATTATGGGCAGTGGCCACCAGC > NC_000913/4008370‑4008499
|
tcaAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302533.4854776/4‑94 (MQ=16)
tcaAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302533.4854775/4‑94 (MQ=16)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.1001159/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.5801257/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302533.5860484/3‑94 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.4581160/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.3455385/92‑1 (MQ=18)
AAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302533.292135/1‑94 (MQ=19)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302533.2953665/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302533.6229189/94‑1 (MQ=21)
aggccatgcgcgggaagcggttgcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.433927/60‑1 (MQ=34)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302533.2757655/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.3758008/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.1204246/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302533.49854/1‑94 (MQ=23)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302533.5418036/94‑1 (MQ=25)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302533.243338/94‑1 (MQ=25)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302533.4117665/94‑1 (MQ=25)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.20499/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.3654174/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.5623384/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC > SRR4302533.39867/1‑94 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302533.1174613/94‑1 (MQ=26)
catgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGA > SRR4302533.3672547/31‑94 (MQ=42)
catgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGA > SRR4302533.538534/31‑94 (MQ=42)
atgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT > SRR4302533.835372/30‑94 (MQ=45)
atgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT < SRR4302533.159236/65‑1 (MQ=45)
tgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG < SRR4302533.227141/66‑1 (MQ=47)
gcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG < SRR4302533.5769847/67‑1 (MQ=49)
cgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC < SRR4302533.3219274/68‑1 (MQ=51)
gctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑G > SRR4302533.2823135/26‑94 (MQ=53)
gctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑G < SRR4302533.1249754/69‑1 (MQ=53)
ctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GG > SRR4302533.3414928/25‑94 (MQ=55)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG > SRR4302533.4347199/24‑94 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302533.725472/71‑1 (MQ=57)
ggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑G < SRR4302533.1492162/72‑1 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA < SRR4302533.1488020/73‑1 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA < SRR4302533.4639773/73‑1 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA > SRR4302533.570631/22‑94 (MQ=56)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GAA > SRR4302533.3519055/21‑94 (MQ=55)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG < SRR4302533.2615802/76‑1 (MQ=53)
cggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaagg < SRR4302533.4427539/77‑7 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302533.1248457/17‑87 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc < SRR4302533.6042832/78‑8 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct > SRR4302533.5714838/16‑86 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302533.1951459/79‑9 (MQ=57)
tggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctg > SRR4302533.43879/15‑85 (MQ=57)
tggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctg < SRR4302533.355138/80‑10 (MQ=57)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCAT > SRR4302533.4625322/12‑94 (MQ=49)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCAT > SRR4302533.2915384/12‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATT > SRR4302533.3589461/11‑94 (MQ=49)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTAT > SRR4302533.3330090/9‑94 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTAT < SRR4302533.2666254/86‑1 (MQ=48)
gaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATG < SRR4302533.1052833/87‑1 (MQ=49)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGG < SRR4302533.4657144/88‑1 (MQ=51)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGG < SRR4302533.2348022/88‑1 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGTCTGCATTATGGG > SRR4302533.3137206/1‑94 (MQ=48)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGG > SRR4302533.2705082/1‑94 (MQ=50)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGG < SRR4302533.1644244/94‑1 (MQ=50)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGC > SRR4302533.4646378/1‑94 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGC < SRR4302533.2672427/94‑1 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGC < SRR4302533.2005247/94‑1 (MQ=53)
ctgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCA < SRR4302533.4060026/91‑1 (MQ=57)
ctgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCA < SRR4302533.849893/91‑1 (MQ=57)
ctgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCA > SRR4302533.1760930/4‑94 (MQ=57)
G‑GGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGT > SRR4302533.1535130/1‑94 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGC > SRR4302533.6199597/1‑94 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGC > SRR4302533.724731/1‑94 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGcg < SRR4302533.5572877/94‑3 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGcg > SRR4302533.5783651/1‑92 (MQ=60)
ACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGcgca < SRR4302533.6277876/94‑5 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACC > SRR4302533.1025366/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACC > SRR4302533.5693748/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACC < SRR4302533.5237275/91‑1 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACC > SRR4302533.1562424/4‑94 (MQ=60)
gcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCA < SRR4302533.3114813/92‑1 (MQ=60)
gcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCA > SRR4302533.97895/3‑94 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAG > SRR4302533.2061001/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAATG‑CTGCATTATGGGCAGTGCGCACCAGC > SRR4302533.2649175/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGC < SRR4302533.5893172/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGC > SRR4302533.5281497/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGC > SRR4302533.6140799/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGC < SRR4302533.5240768/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGC > SRR4302533.1691103/1‑94 (MQ=60)
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TTCAAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAAG‑CTGCATTATGGGCAGTGGCCACCAGC > NC_000913/4008370‑4008499
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
