Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,080,532	A→G	R957R (CGT→CGC)	fdoG ←	formate dehydrogenase‑O, major subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,080,532	0	A	G	100.0%	854.6 / NA	263	R957R (CGT→CGC)	fdoG	formate dehydrogenase‑O, major subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (141/122); total (141/122)

Only 100 of 268 total aligned reads displayed.

AAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATACGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGC  >  NC_000913/4080442‑4080621

 aaGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGt                                                                                        >  2:2840081/1‑93 (MQ=255)

 aaGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGt                                                                                        >  2:6023980/1‑93 (MQ=255)

 aaGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGt                                                                                        <  2:5664320/93‑1 (MQ=255)

  aGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGtt                                                                                       <  1:4131859/93‑1 (MQ=255)

   gCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGttt                                                                                      <  1:1512054/93‑1 (MQ=255)

   gCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGttt                                                                                      >  2:4776573/1‑93 (MQ=255)

     cTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTgg                                                                                    >  2:2087702/1‑93 (MQ=255)

     cTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTgg                                                                                    <  1:453985/93‑1 (MQ=255)

      ttttttAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGt                                                                                   >  2:2047266/1‑93 (MQ=255)

      ttttttAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGt                                                                                   <  1:3195120/93‑1 (MQ=255)

         tttAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTcac                                                                                >  1:5703755/1‑93 (MQ=255)

         tttAGCTACGCCTTCATAGCCCCAGTGAATCCGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTcac                                                                                >  2:4849721/1‑93 (MQ=255)

          ttAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTcacc                                                                               <  2:4223275/93‑1 (MQ=255)

           tAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTcacca                                                                              >  2:1360331/1‑93 (MQ=255)

           tAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTcacca                                                                              >  1:4488390/1‑93 (MQ=255)

            aGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTcaccac                                                                             >  2:4732189/1‑93 (MQ=255)

             gCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCaccacc                                                                            >  2:3064349/1‑93 (MQ=255)

             gCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCaccacc                                                                            >  1:4661692/1‑93 (MQ=255)

              cTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCg                                                                           >  2:708513/1‑93 (MQ=255)

              cTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCg                                                                           >  1:1136845/1‑93 (MQ=255)

               tACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgc                                                                          <  2:6248169/93‑1 (MQ=255)

               tACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgc                                                                          >  2:3840014/1‑93 (MQ=255)

               tACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgc                                                                          >  2:112631/1‑93 (MQ=255)

                aCGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgct                                                                         <  2:1803764/93‑1 (MQ=255)

                aCGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgct                                                                         >  1:612618/1‑93 (MQ=255)

                   ccTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttg                                                                      >  2:2015355/1‑93 (MQ=255)

                   ccTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttg                                                                      >  1:949716/1‑93 (MQ=255)

                   ccTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttg                                                                      <  1:213916/93‑1 (MQ=255)

                     ttCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttggc                                                                    >  2:2238359/1‑93 (MQ=255)

                     ttCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttggc                                                                    >  1:6190748/1‑93 (MQ=255)

                     ttCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttggc                                                                    >  2:1673661/1‑93 (MQ=255)

                      tCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttggct                                                                   >  2:51651/1‑93 (MQ=255)

                        aTAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttggcttt                                                                 <  2:275835/93‑1 (MQ=255)

                         tAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCgctttggctttg                                                                <  1:276310/93‑1 (MQ=255)

                          aGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGa                                                               >  2:4993466/1‑93 (MQ=255)

                           gCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGat                                                              >  1:4374831/1‑93 (MQ=255)

                            gcccAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGata                                                             <  1:1899952/92‑1 (MQ=255)

                            ccccAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGata                                                             >  1:1574603/1‑93 (MQ=255)

                            ccccAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGata                                                             <  2:5208081/93‑1 (MQ=255)

                            ccccAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGata                                                             <  1:142356/93‑1 (MQ=255)

                            ccccAGTGAATCGGAATACCGATGGGATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCAACGCTTTGGCTTTGata                                                             >  2:1322128/1‑93 (MQ=255)

                                aGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGc                                                         >  2:1950003/1‑93 (MQ=255)

                                 gTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGcc                                                        >  2:4046036/1‑93 (MQ=255)

                                 gTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGcc                                                        >  2:3611575/1‑93 (MQ=255)

                                  tGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCa                                                       <  2:6258866/93‑1 (MQ=255)

                                  tGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCa                                                       <  2:3692015/93‑1 (MQ=255)

                                    aaTCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACg                                                     >  2:1485632/1‑93 (MQ=255)

                                       cGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGtt                                                  <  1:5264038/93‑1 (MQ=255)

                                        ggAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTg                                                 <  1:2158814/93‑1 (MQ=255)

                                         gAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTgg                                                <  2:1088984/93‑1 (MQ=255)

                                         gAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTgg                                                <  2:5949031/93‑1 (MQ=255)

                                         gAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTgg                                                >  2:5729139/1‑93 (MQ=255)

                                           aTACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTggag                                              <  1:271790/93‑1 (MQ=255)

                                           aTACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTggag                                              >  2:3928038/1‑93 (MQ=255)

                                            tACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTggagg                                             <  1:857864/93‑1 (MQ=255)

                                             aCCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTggagga                                            <  1:678873/93‑1 (MQ=255)

                                               cGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGgaga                                          >  1:1676104/1‑93 (MQ=255)

                                               cGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGgaga                                          <  1:327088/93‑1 (MQ=255)

                                                 aTGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACt                                        >  1:2425185/1‑93 (MQ=255)

                                                 aTGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACt                                        >  1:5755503/1‑93 (MQ=255)

                                                 aTGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACt                                        >  2:5893737/1‑93 (MQ=255)

                                                  tGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACtt                                       <  2:1194904/93‑1 (MQ=255)

                                                     tATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCa                                    <  2:5804141/93‑1 (MQ=255)

                                                      aTCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCAc                                   >  2:2151200/1‑93 (MQ=255)

                                                         gATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGt                                >  1:4730313/1‑93 (MQ=255)

                                                         gATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGt                                >  1:2044281/1‑93 (MQ=255)

                                                          atatCTTTGCCGTTCGCTTTTAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTa                               >  2:6065610/1‑93 (MQ=255)

                                                          atatCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTa                               >  2:4380553/1‑93 (MQ=255)

                                                          atatCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTa                               >  2:2944288/1‑93 (MQ=255)

                                                           tatCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTAt                              >  2:2539585/1‑93 (MQ=255)

                                                           tatCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTAt                              <  2:6212104/93‑1 (MQ=255)

                                                           tatCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTAt                              >  2:972881/1‑93 (MQ=255)

                                                            atCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATc                             <  1:589917/93‑1 (MQ=255)

                                                            atCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATc                             >  2:4433047/1‑93 (MQ=255)

                                                             tCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCg                            >  2:5187245/1‑93 (MQ=255)

                                                               tttGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGcc                          >  2:2387616/1‑93 (MQ=255)

                                                                ttGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGccc                         <  1:79664/93‑1 (MQ=255)

                                                                 tGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCt                        <  1:1002157/93‑1 (MQ=255)

                                                                 tGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCt                        <  1:4002602/93‑1 (MQ=255)

                                                                  gCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTg                       >  1:3755215/1‑93 (MQ=255)

                                                                  gCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTg                       >  1:3491216/1‑93 (MQ=255)

                                                                  gCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTg                       <  1:5451142/93‑1 (MQ=255)

                                                                   ccGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTgg                      <  1:2514136/93‑1 (MQ=255)

                                                                    cGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTggg                     >  2:4266646/1‑93 (MQ=255)

                                                                     gTTCGCTTTCAGGGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGc                    <  1:1777240/93‑1 (MQ=255)

                                                                      ttCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCa                   >  1:5118913/1‑93 (MQ=255)

                                                                      ttCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCa                   >  1:6040435/1‑93 (MQ=255)

                                                                       tCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCaa                  <  1:3983140/93‑1 (MQ=255)

                                                                        cGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAAt                 <  2:2597626/93‑1 (MQ=255)

                                                                          cTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGc               >  1:5569725/1‑93 (MQ=255)

                                                                          cTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGc               >  2:5472856/1‑93 (MQ=255)

                                                                             tCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCaa            <  2:5051870/93‑1 (MQ=255)

                                                                                   tGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTAt      >  1:5287606/1‑93 (MQ=255)

                                                                                   tGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTAt      >  2:3410625/1‑93 (MQ=255)

                                                                                    gCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTAtt     >  2:4627965/1‑93 (MQ=255)

                                                                                     cGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTc    <  1:2287894/93‑1 (MQ=255)

                                                                                      gAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCg   >  2:5646787/1‑93 (MQ=255)

                                                                                      gAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCg   >  1:5155920/1‑93 (MQ=255)

                                                                                       aaTGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGc  <  1:4952781/93‑1 (MQ=255)

                                                                                       aaTGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGc  >  1:3485261/1‑93 (MQ=255)

AAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATACGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGC  >  NC_000913/4080442‑4080621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATAAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATACGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCAGC  >  NC_000913/4080439‑4080625

AATAAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATG                                                                                               >  SRR4302533.4735890/1‑94 (MQ=60)

 ATAAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGC                                                                                              >  SRR4302533.4254777/1‑94 (MQ=60)

 ATAAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGC                                                                                              >  SRR4302533.4540353/1‑94 (MQ=60)

  TAAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCG                                                                                             >  SRR4302533.1753178/1‑94 (MQ=60)

    AAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTT                                                                                           <  SRR4302533.2145286/94‑1 (MQ=60)

    AAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTT                                                                                           <  SRR4302533.1039121/94‑1 (MQ=60)

     AGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTT                                                                                          >  SRR4302533.1394644/1‑94 (MQ=60)

     AGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTT                                                                                          <  SRR4302533.3872809/94‑1 (MQ=60)

     AGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTT                                                                                          <  SRR4302533.4156940/94‑1 (MQ=60)

     AGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTT                                                                                          >  SRR4302533.795342/1‑94 (MQ=60)

      GCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTG                                                                                         <  SRR4302533.5783041/94‑1 (MQ=60)

      GCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTG                                                                                         <  SRR4302533.1521166/94‑1 (MQ=60)

        CTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGT                                                                                       <  SRR4302533.456700/94‑1 (MQ=60)

         TTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTC                                                                                      <  SRR4302533.5572167/94‑1 (MQ=60)

         TTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTC                                                                                      >  SRR4302533.409939/1‑94 (MQ=60)

         TTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTC                                                                                      <  SRR4302533.3214778/94‑1 (MQ=60)

           TTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCAC                                                                                    >  SRR4302533.5738208/1‑94 (MQ=60)

             TTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCA                                                                                  >  SRR4302533.4515561/1‑94 (MQ=60)

             TTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCA                                                                                  >  SRR4302533.4228485/1‑94 (MQ=60)

               AGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTTGTCACCACC                                                                                >  SRR4302533.4479053/1‑94 (MQ=60)

               AGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACC                                                                                >  SRR4302533.5143061/1‑94 (MQ=60)

               AGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACC                                                                                >  SRR4302533.4689941/1‑94 (MQ=60)

                GCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCG                                                                               >  SRR4302533.1143606/1‑94 (MQ=60)

                  TACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCT                                                                             >  SRR4302533.616219/1‑94 (MQ=60)

                  TACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCT                                                                             >  SRR4302533.977875/1‑94 (MQ=60)

                     GCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTG                                                                          >  SRR4302533.5078647/1‑94 (MQ=60)

                     GCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTG                                                                          >  SRR4302533.955292/1‑94 (MQ=60)

                      CCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGG                                                                         <  SRR4302533.215262/94‑1 (MQ=60)

                      CCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGG                                                                         >  SRR4302533.699854/1‑94 (MQ=60)

                       CTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGC                                                                        >  SRR4302533.6227899/1‑94 (MQ=60)

                        TTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCT                                                                       <  SRR4302533.6229247/94‑1 (MQ=60)

                            TAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGA                                                                   <  SRR4302533.277992/94‑1 (MQ=60)

                             AGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGAT                                                                  >  SRR4302533.4401237/1‑94 (MQ=60)

                              GCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATA                                                                 >  SRR4302533.4574389/1‑94 (MQ=60)

                              GCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATA                                                                 >  SRR4302533.1584087/1‑94 (MQ=60)

                              GCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATA                                                                 <  SRR4302533.326706/94‑1 (MQ=60)

                               GCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATAT                                                                <  SRR4302533.1911557/94‑1 (MQ=60)

                               CCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATAT                                                                <  SRR4302533.661061/94‑1 (MQ=60)

                               CCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATAT                                                                >  SRR4302533.5156222/1‑94 (MQ=60)

                               CCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATAT                                                                <  SRR4302533.143265/94‑1 (MQ=60)

                                CCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATA                                                               <  SRR4302533.5990691/94‑1 (MQ=60)

                                CCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATA                                                               <  SRR4302533.2409968/94‑1 (MQ=60)

                                 CCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAG                                                              <  SRR4302533.3594813/94‑1 (MQ=60)

                                  CAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGC                                                             >  SRR4302533.5770216/1‑94 (MQ=60)

                                   AGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCC                                                            <  SRR4302533.4772927/94‑1 (MQ=60)

                                   AGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGCCACCACCGCTTTGGCTTTGATATAGCC                                                            >  SRR4302533.5318495/1‑94 (MQ=60)

                                     TGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCAC                                                          <  SRR4302533.2170599/94‑1 (MQ=60)

                                      GAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACG                                                         >  SRR4302533.2736449/1‑94 (MQ=60)

                                      GAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACG                                                         >  SRR4302533.2317180/1‑94 (MQ=60)

                                      GAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACG                                                         <  SRR4302533.1962293/94‑1 (MQ=60)

                                      GAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACG                                                         <  SRR4302533.3376961/94‑1 (MQ=60)

                                       AATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGCCACCACCGCTTTGGCTTTGATATAGCCACGG                                                        <  SRR4302533.2483130/94‑1 (MQ=60)

                                          CGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGTCACGGTTG                                                     >  SRR4302533.521091/1‑94 (MQ=60)

                                          CGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTG                                                     <  SRR4302533.5295634/94‑1 (MQ=60)

                                           GGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGG                                                    >  SRR4302533.5359151/1‑94 (MQ=60)

                                           GGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGG                                                    <  SRR4302533.2172106/94‑1 (MQ=60)

                                            GAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGA                                                   <  SRR4302533.40012/94‑1 (MQ=60)

                                             AATGCCGATGGTATCGATATCTTTGCCGTTCGCTTGCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAG                                                  <  SRR4302533.4643983/94‑1 (MQ=60)

                                              ATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGG                                                 <  SRR4302533.273444/94‑1 (MQ=60)

                                               TACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGA                                                <  SRR4302533.862890/94‑1 (MQ=60)

                                               TACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGA                                                <  SRR4302533.4427963/94‑1 (MQ=60)

                                                ACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAG                                               >  SRR4302533.190708/1‑94 (MQ=60)

                                                ACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAG                                               <  SRR4302533.682886/94‑1 (MQ=60)

                                                 CCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGA                                              >  SRR4302533.1686253/1‑94 (MQ=60)

                                                 CCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGA                                              <  SRR4302533.5734761/94‑1 (MQ=60)

                                                  CGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGAC                                             <  SRR4302533.329078/94‑1 (MQ=60)

                                                   GATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACT                                            >  SRR4302533.1489911/1‑94 (MQ=60)

                                                   GATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACT                                            >  SRR4302533.5790231/1‑94 (MQ=60)

                                                   GATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACT                                            >  SRR4302533.2440157/1‑94 (MQ=60)

                                                    ATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAcagcagatcggaagagcggt                                           >  SRR4302533.5672389/1‑74 (MQ=60)

                                                      GGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTC                                         >  SRR4302533.850425/1‑94 (MQ=60)

                                                       GTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCA                                        >  SRR4302533.4521424/1‑94 (MQ=60)

                                                       GTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCA                                        <  SRR4302533.4020746/94‑1 (MQ=60)

                                                        TATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCAC                                       <  SRR4302533.164839/94‑1 (MQ=60)

                                                           CGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGT                                    >  SRR4302533.2056881/1‑94 (MQ=60)

                                                           CGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGT                                    >  SRR4302533.4044734/1‑94 (MQ=60)

                                                           CGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGT                                    >  SRR4302533.4758991/1‑94 (MQ=60)

                                                            GATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTA                                   >  SRR4302533.20358/1‑94 (MQ=60)

                                                            GATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTA                                   <  SRR4302533.6220481/94‑1 (MQ=60)

                                                            GATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTA                                   >  SRR4302533.3507402/1‑94 (MQ=60)

                                                             ATATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTAT                                  <  SRR4302533.2752787/94‑1 (MQ=60)

                                                              TATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATC                                 <  SRR4302533.600651/94‑1 (MQ=60)

                                                               ATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCG                                >  SRR4302533.5369303/1‑94 (MQ=60)

                                                               ATCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCG                                <  SRR4302533.593402/94‑1 (MQ=60)

                                                                TCTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGC                               >  SRR4302533.1477212/1‑94 (MQ=60)

                                                                 CTTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCC                              >  SRR4302533.2568391/1‑94 (MQ=60)

                                                                  TTTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCC                             >  SRR4302533.1534304/1‑94 (MQ=60)

                                                                   TTGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCT                            <  SRR4302533.80174/94‑1 (MQ=60)

                                                                    TGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTG                           <  SRR4302533.4026975/94‑1 (MQ=60)

                                                                    TGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTG                           <  SRR4302533.1008008/94‑1 (MQ=60)

                                                                    TGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTG                           >  SRR4302533.3778231/1‑94 (MQ=60)

                                                                    TGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTG                           >  SRR4302533.3512748/1‑94 (MQ=60)

                                                                    TGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTG                           <  SRR4302533.2871230/94‑1 (MQ=60)

                                                                    TGCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTG                           >  SRR4302533.2283983/1‑94 (MQ=60)

                                                                     GCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGG                          <  SRR4302533.2081536/94‑1 (MQ=60)

                                                                     GCCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGG                          <  SRR4302533.5483981/94‑1 (MQ=60)

                                                                      CCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGG                         <  SRR4302533.2529627/94‑1 (MQ=60)

                                                                      CCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGG                         >  SRR4302533.1774863/1‑94 (MQ=60)

                                                                      CCGTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGG                         <  SRR4302533.3266744/94‑1 (MQ=60)

                                                                        GTTCGCTTTCAGGGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCA                       <  SRR4302533.1788058/94‑1 (MQ=60)

                                                                        GTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCA                       >  SRR4302533.4697210/1‑94 (MQ=60)

                                                                        GTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCA                       >  SRR4302533.6077037/1‑94 (MQ=60)

                                                                        GTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCA                       >  SRR4302533.5149842/1‑94 (MQ=60)

                                                                        GTTCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCA                       >  SRR4302533.5913331/1‑94 (MQ=60)

                                                                          TCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAAT                     <  SRR4302533.941970/94‑1 (MQ=60)

                                                                          TCGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAAT                     <  SRR4302533.4007388/94‑1 (MQ=60)

                                                                           CGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATG                    >  SRR4302533.2239847/1‑94 (MQ=60)

                                                                           CGCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATG                    >  SRR4302533.3419641/1‑94 (MQ=60)

                                                                            GCTTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGC                   >  SRR4302533.5603390/1‑94 (MQ=60)

                                                                              TTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCA                 >  SRR4302533.6111530/1‑94 (MQ=60)

                                                                              TTTCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCA                 >  SRR4302533.951290/1‑94 (MQ=60)

                                                                                TCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAG               <  SRR4302533.6100627/94‑1 (MQ=60)

                                                                                TCAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAG               <  SRR4302533.97836/94‑1 (MQ=60)

                                                                                 CAGCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGT              <  SRR4302533.4394375/94‑1 (MQ=60)

                                                                                   GCGTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTT            <  SRR4302533.2726798/94‑1 (MQ=60)

                                                                                     GTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTAT          >  SRR4302533.5319274/1‑94 (MQ=60)

                                                                                     GTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTAT          <  SRR4302533.1671807/94‑1 (MQ=60)

                                                                                     GTGCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTAT          >  SRR4302533.4691677/1‑94 (MQ=60)

                                                                                       GCGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTC        <  SRR4302533.5166156/94‑1 (MQ=60)

                                                                                        CGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCG       <  SRR4302533.2302056/94‑1 (MQ=60)

                                                                                        CGAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCG       >  SRR4302533.5187053/1‑94 (MQ=60)

                                                                                         GAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGC      <  SRR4302533.1228734/94‑1 (MQ=60)

                                                                                         GAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGC      >  SRR4302533.370406/1‑94 (MQ=60)

                                                                                         GAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGC      >  SRR4302533.5318768/1‑94 (MQ=60)

                                                                                         GAATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGC      >  SRR4302533.3506756/1‑94 (MQ=60)

                                                                                          AATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCC     <  SRR4302533.4982780/94‑1 (MQ=60)

                                                                                          AATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCC     >  SRR4302533.357104/1‑94 (MQ=60)

                                                                                          AATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCC     >  SRR4302533.5916269/1‑94 (MQ=60)

                                                                                           ATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCA    <  SRR4302533.1747469/94‑1 (MQ=60)

                                                                                           ATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCA    <  SRR4302533.1014354/94‑1 (MQ=60)

                                                                                           ATGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCA    >  SRR4302533.5713410/1‑94 (MQ=60)

                                                                                            TGCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCAG   <  SRR4302533.3532232/94‑1 (MQ=60)

                                                                                            TGCGTGTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCAG   <  SRR4302533.4900431/94‑1 (MQ=60)

                                                                                             GCGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCAGC  <  SRR4302533.312846/94‑1 (MQ=60)

AATAAAGCCTTTTTTAGCTACGCCTTCATAGCCCCAGTGAATCGGAATACCGATGGTATCGATATCTTTGCCGTTCGCTTTCAGCGTGCGAATACGTTTGGTCACCACCGCTTTGGCTTTGATATAGCCACGGTTGGAGGAGACTTTCACGGTATCGCCCTGGGCAATGCCAAGTTTATTCGCCAGC  >  NC_000913/4080439‑4080625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`