Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,369,183	A→G	Q194R (CAG→CGG)	mopA →	GroEL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,369,183	0	A	G	100.0%	782.9 / NA	243	Q194R (CAG→CGG)	mopA	GroEL
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/127); total (116/127)

Only 100 of 255 total aligned reads displayed.

AAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCAGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCT  >  NC_000913/4369093‑4369271

aaGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGt                                                                                        <  1:4866959/93‑1 (MQ=255)

aaGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGt                                                                                        >  1:1631100/1‑93 (MQ=255)

aaGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGt                                                                                        >  1:2064118/1‑93 (MQ=255)

  gCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTc                                                                                      <  1:1268780/93‑1 (MQ=255)

  gCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTc                                                                                      <  1:4952789/93‑1 (MQ=255)

  gCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTc                                                                                      >  2:3798199/1‑93 (MQ=255)

   cGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCg                                                                                     >  2:5010330/1‑93 (MQ=255)

    gATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGa                                                                                    >  2:6061465/1‑93 (MQ=255)

      tGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGAcc                                                                                  <  1:3396950/93‑1 (MQ=255)

       ggACAAAGTCGGTAAAGAGGGCGTCATCACCGTTGAGGACGGTACCGGTGTGAAGGACGACCTGGCCGTGGTTGAAGCTATGCGCTTCGCCCg                                                                                 <  2:33558/93‑1 (MQ=255)

       ggACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCg                                                                                 >  1:3637306/1‑93 (MQ=255)

         aCAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTg                                                                               >  2:5596627/1‑93 (MQ=255)

         aCAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTg                                                                               <  1:2480894/93‑1 (MQ=255)

         aCAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTg                                                                               >  1:2169905/1‑93 (MQ=255)

          cAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTgg                                                                              <  1:4129260/93‑1 (MQ=255)

          cAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTgg                                                                              <  2:1867489/93‑1 (MQ=255)

           aaaGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGc                                                                             <  2:4029084/93‑1 (MQ=255)

           aaaGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGc                                                                             <  1:5776108/93‑1 (MQ=255)

            aaGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCt                                                                            <  1:1022607/93‑1 (MQ=255)

            aaGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCt                                                                            >  2:1431154/1‑93 (MQ=255)

            aaGTCGGTAAAGAAGGCGTTATCACCGGTGAAGACGGTACCGGGCTGCAGGACGAACTGGACGTGGTTGAAGGGATGCGGTTCGACCGTGGCt                                                                            >  2:4278141/1‑93 (MQ=255)

               tCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTAcc                                                                         <  1:26003/93‑1 (MQ=255)

               tCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTAcc                                                                         <  2:1196562/93‑1 (MQ=255)

                cGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCt                                                                        <  2:848493/93‑1 (MQ=255)

                  gTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGt                                                                      >  2:1334338/1‑93 (MQ=255)

                      agaagGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTcc                                                                  >  2:1570184/1‑93 (MQ=255)

                      agaagGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTcc                                                                  >  1:1675567/1‑93 (MQ=255)

                      agaagGCGTTAGCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTcc                                                                  <  1:1356649/93‑1 (MQ=255)

                         agGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTa                                                               >  1:2205870/1‑93 (MQ=255)

                           gCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACt                                                             <  1:584282/93‑1 (MQ=255)

                           gCGTTATCACCGTTGAAGACGGTACCGGGCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACt                                                             >  1:3713645/1‑93 (MQ=255)

                             gTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtc                                                           <  1:2075000/93‑1 (MQ=255)

                             gTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGCCTCCTTACTtc                                                           >  1:6132599/1‑93 (MQ=255)

                              ttATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtca                                                          <  1:5289783/93‑1 (MQ=255)

                              ttATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtca                                                          >  2:2262389/1‑93 (MQ=255)

                                 tCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtcatca                                                       >  1:325859/1‑93 (MQ=255)

                                 tCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtcatca                                                       >  2:256429/1‑93 (MQ=255)

                                 tCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTAGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtcatca                                                       >  1:1077795/1‑93 (MQ=255)

                                 tCACCGTTGAAGACGGTACCGGTCTGCACGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTtcatca                                                       >  2:1006653/1‑93 (MQ=255)

                                     cGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATcaacaa                                                   <  1:1289259/93‑1 (MQ=255)

                                      gTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAg                                                  >  1:3077202/1‑93 (MQ=255)

                                       ttGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGc                                                 >  2:2947051/1‑93 (MQ=255)

                                         gAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGGAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCg                                               >  2:526604/1‑93 (MQ=255)

                                         gAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGCCCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCg                                               <  1:2866729/93‑1 (MQ=255)

                                         gAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCg                                               >  2:761253/1‑93 (MQ=255)

                                          aaGTCGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGTCCGTGTCTACCTGTCTCCTTACTTCATCAACAAGCCgg                                              <  2:2533201/93‑1 (MQ=255)

                                          aaGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCgg                                              <  1:5456748/93‑1 (MQ=255)

                                             aCGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGaaa                                           >  1:451727/1‑93 (MQ=255)

                                              cGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAAc                                          <  1:4689184/93‑1 (MQ=255)

                                               ggTGCCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGGGGCTACCTGTCTCCGTACTTCATCAACAAGCCGGAAACt                                         <  2:2974150/93‑1 (MQ=255)

                                               ggTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACt                                         >  2:3979012/1‑93 (MQ=255)

                                               ggTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACt                                         >  1:3003589/1‑93 (MQ=255)

                                                gTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTGTCCTTACTTCATCAACAAGCCGGAAACTg                                        >  2:6191936/1‑93 (MQ=255)

                                                gTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCCACAAGCCGGCAACTg                                        >  1:187220/1‑93 (MQ=255)

                                                 tACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTgg                                       <  1:5634072/93‑1 (MQ=255)

                                                 tACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTgg                                       >  2:4157237/1‑93 (MQ=255)

                                                 tACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTgg                                       <  1:4313296/93‑1 (MQ=255)

                                                 tACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTgg                                       <  2:2805604/93‑1 (MQ=255)

                                                  aCCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGgc                                      <  1:5180160/93‑1 (MQ=255)

                                                   ccGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGgcg                                     >  1:6149963/1‑93 (MQ=255)

                                                   ccGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGgcg                                     >  1:4460949/1‑93 (MQ=255)

                                                     ggTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCa                                   <  2:4675546/93‑1 (MQ=255)

                                                     ggTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCa                                   >  2:1298040/1‑93 (MQ=255)

                                                      gTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTAACTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAg                                  >  2:4580039/1‑93 (MQ=255)

                                                      gTCTGCAGGACGAACTGGACGTGGTTGAAGGCATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAg                                  >  2:342779/1‑93 (MQ=255)

                                                       tCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGt                                 <  2:4505886/93‑1 (MQ=255)

                                                         tGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAg                               >  2:1768454/1‑93 (MQ=255)

                                                         tGCAGGACGAACTGGACGTGGTTGAAGGAATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCTACAATCCGGCAACTGGCGCAGTAg                               >  2:2877377/1‑93 (MQ=255)

                                                          gCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGa                              >  2:3226829/1‑93 (MQ=255)

                                                            aGGGCGAACTGGACGTGGTTGAAGGTGTGCTGTTCGGCCGTGGCTACCTTTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAAc                            <  1:589008/93‑1 (MQ=255)

                                                            aGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTGCCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAAc                            <  1:5794251/93‑1 (MQ=255)

                                                             ggACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACt                           >  2:1117543/1‑93 (MQ=255)

                                                              gACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTg                          <  2:1656775/93‑1 (MQ=255)

                                                                  aaCTGGACGTTGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGaaa                      <  2:5710083/93‑1 (MQ=255)

                                                                   aCTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAg                     >  1:566652/1‑93 (MQ=255)

                                                                   aCTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAg                     >  1:664317/1‑93 (MQ=255)

                                                                    cTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGc                    <  1:4658873/93‑1 (MQ=255)

                                                                    cTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGc                    >  1:2312159/1‑93 (MQ=255)

                                                                    cTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGc                    <  2:5316663/93‑1 (MQ=255)

                                                                     tGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGcc                   >  2:1920955/1‑93 (MQ=255)

                                                                      ggACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGccc                  >  2:3632294/1‑93 (MQ=255)

                                                                      ggACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGccc                  <  1:5484603/93‑1 (MQ=255)

                                                                      ggACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGccc                  <  1:4380247/93‑1 (MQ=255)

                                                                      ggACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGccc                  >  1:5522458/1‑93 (MQ=255)

                                                                        aCGTAGTGGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGt                <  1:2661465/93‑1 (MQ=255)

                                                                         cGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGtt               <  1:856429/93‑1 (MQ=255)

                                                                           tGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCa             >  1:1593423/1‑93 (MQ=255)

                                                                           tGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCa             <  2:3191656/93‑1 (MQ=255)

                                                                           gggTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTCCTTCATCACCAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCa             <  2:4799030/92‑1 (MQ=255)

                                                                             gTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATc           <  1:1476977/93‑1 (MQ=255)

                                                                              ttGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATcc          <  2:2662345/93‑1 (MQ=255)

                                                                                  aGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCctgct      >  1:5094342/1‑93 (MQ=255)

                                                                                  aGGTATGCGGTTCGACCGTGGCTACCCGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCctgct      <  2:5094566/93‑1 (MQ=255)

                                                                                   ggTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCctgctg     >  1:1715895/1‑93 (MQ=255)

                                                                                   ggTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCctgctg     <  2:1736187/93‑1 (MQ=255)

                                                                                   ggTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCctgctg     <  2:3879897/93‑1 (MQ=255)

                                                                                    gTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTgctgg    <  2:1987684/93‑1 (MQ=255)

                                                                                      aTGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTgctggct  >  2:4914557/1‑93 (MQ=255)

                                                                                      aTGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTgctggct  <  1:3874045/93‑1 (MQ=255)

                                                                                      aTGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTgctggct  <  2:5659903/93‑1 (MQ=255)

AAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCAGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCT  >  NC_000913/4369093‑4369271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCAGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTGACAA  >  NC_000913/4369090‑4369276

CTGAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCG                                                                                               >  SRR4302533.4563394/1‑94 (MQ=60)

 TGAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGG                                                                                              <  SRR4302533.6119258/94‑1 (MQ=60)

 TGAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGG                                                                                              <  SRR4302533.4537884/94‑1 (MQ=60)

  GAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGT                                                                                             >  SRR4302533.2076841/1‑94 (MQ=60)

  GAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGT                                                                                             >  SRR4302533.1640979/1‑94 (MQ=60)

  GAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGT                                                                                             <  SRR4302533.6110087/94‑1 (MQ=60)

   AAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTT                                                                                            <  SRR4302533.579327/94‑1 (MQ=60)

   AAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTT                                                                                            <  SRR4302533.4896451/94‑1 (MQ=60)

    AGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTC                                                                                           <  SRR4302533.1382984/94‑1 (MQ=60)

    AGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTC                                                                                           <  SRR4302533.1611127/94‑1 (MQ=60)

     GCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCG                                                                                          <  SRR4302533.1276375/94‑1 (MQ=60)

     GCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCG                                                                                          <  SRR4302533.4982788/94‑1 (MQ=60)

      CGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGA                                                                                         >  SRR4302533.6166985/1‑94 (MQ=60)

      CGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGA                                                                                         >  SRR4302533.5170514/1‑94 (MQ=60)

      CGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGA                                                                                         <  SRR4302533.3335123/94‑1 (MQ=60)

       GATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGAC                                                                                        >  SRR4302533.5845247/1‑94 (MQ=60)

        ATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACC                                                                                       <  SRR4302533.6227846/94‑1 (MQ=60)

        ATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACC                                                                                       <  SRR4302533.1952041/94‑1 (MQ=60)

         TGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCG                                                                                      >  SRR4302533.3659669/1‑94 (MQ=60)

         TGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCG                                                                                      <  SRR4302533.441027/94‑1 (MQ=60)

         TGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCG                                                                                      <  SRR4302533.3417928/94‑1 (MQ=60)

          GGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGT                                                                                     >  SRR4302533.1172965/1‑94 (MQ=60)

          GGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGT                                                                                     <  SRR4302533.2381037/94‑1 (MQ=60)

           GACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTG                                                                                    >  SRR4302533.2183249/1‑94 (MQ=60)

           GACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTG                                                                                    >  SRR4302533.3495366/1‑94 (MQ=60)

            ACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGG                                                                                   <  SRR4302533.1356891/94‑1 (MQ=60)

            ACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGG                                                                                   <  SRR4302533.1123846/94‑1 (MQ=60)

            ACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGG                                                                                   <  SRR4302533.2496194/94‑1 (MQ=60)

             CAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGC                                                                                  <  SRR4302533.4154325/94‑1 (MQ=60)

              AAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCT                                                                                 <  SRR4302533.5810991/94‑1 (MQ=60)

               AAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTA                                                                                <  SRR4302533.4689707/94‑1 (MQ=60)

               AAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTA                                                                                <  SRR4302533.1028619/94‑1 (MQ=60)

                  TCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCT                                                                             <  SRR4302533.26176/94‑1 (MQ=60)

                  TCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCT                                                                             <  SRR4302533.5375005/94‑1 (MQ=60)

                   CGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTG                                                                            >  SRR4302533.2790385/1‑94 (MQ=60)

                     GTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTC                                                                          <  SRR4302533.3195333/94‑1 (MQ=60)

                      TAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCT                                                                         <  SRR4302533.2849242/94‑1 (MQ=60)

                        AAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCC                                                                       >  SRR4302533.1685713/1‑94 (MQ=60)

                         AGAAGGCGTTAGCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCT                                                                      <  SRR4302533.1364802/94‑1 (MQ=60)

                          GAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTT                                                                     >  SRR4302533.2132247/1‑94 (MQ=60)

                          GAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTT                                                                     >  SRR4302533.6172299/1‑94 (MQ=60)

                           AAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTA                                                                    >  SRR4302533.2219474/1‑94 (MQ=60)

                           AAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTA                                                                    <  SRR4302533.2604001/94‑1 (MQ=60)

                            AGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTAC                                                                   >  SRR4302533.207981/1‑94 (MQ=60)

                            AGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTAC                                                                   <  SRR4302533.452407/94‑1 (MQ=60)

                            AGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGGATGCGGTTCGCCCGTGGCTACCTTTCTCCTTAC                                                                   >  SRR4302533.3736951/1‑94 (MQ=60)

                             GGCGTTATCACCGTTGAAGACGGTACCGGGCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACT                                                                  >  SRR4302533.3736446/1‑94 (MQ=60)

                              GCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTT                                                                 <  SRR4302533.587727/94‑1 (MQ=60)

                               CGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTC                                                                >  SRR4302533.4935054/1‑94 (MQ=60)

                               CGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGCCTCCTTACTTC                                                                >  SRR4302533.6169547/1‑94 (MQ=60)

                                GTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCA                                                               <  SRR4302533.2087775/94‑1 (MQ=60)

                                 TTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCAT                                                              <  SRR4302533.4496648/94‑1 (MQ=60)

                                 TTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCAT                                                              <  SRR4302533.5321461/94‑1 (MQ=60)

                                 TTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCAT                                                              >  SRR4302533.4663327/1‑94 (MQ=60)

                                   ATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCA                                                            >  SRR4302533.2909117/1‑94 (MQ=60)

                                   ATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCA                                                            >  SRR4302533.327845/1‑94 (MQ=60)

                                   ATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCA                                                            <  SRR4302533.4690583/94‑1 (MQ=60)

                                   ATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTAGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCA                                                            >  SRR4302533.1084148/1‑94 (MQ=60)

                                     CACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTTCTTACTTCATCAAC                                                          >  SRR4302533.2547835/1‑94 (MQ=60)

                                       CCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAA                                                        <  SRR4302533.4417368/94‑1 (MQ=60)

                                        CGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAG                                                       >  SRR4302533.3096087/1‑94 (MQ=60)

                                        CGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAG                                                       <  SRR4302533.1297020/94‑1 (MQ=60)

                                         GTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGC                                                      >  SRR4302533.297396/1‑94 (MQ=60)

                                         GTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGC                                                      >  SRR4302533.5317036/1‑94 (MQ=60)

                                          TTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCC                                                     <  SRR4302533.5828544/94‑1 (MQ=60)

                                          TTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCC                                                     <  SRR4302533.1690231/94‑1 (MQ=60)

                                          TTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTGGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCC                                                     <  SRR4302533.1843962/94‑1 (MQ=60)

                                           TGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCG                                                    <  SRR4302533.1935476/94‑1 (MQ=60)

                                           TGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCG                                                    >  SRR4302533.5011405/1‑94 (MQ=60)

                                            GAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGCCCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGG                                                   <  SRR4302533.2884366/94‑1 (MQ=60)

                                            GAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGG                                                   >  SRR4302533.5498409/1‑94 (MQ=60)

                                             AAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGA                                                  >  SRR4302533.1536493/1‑94 (MQ=60)

                                             AAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGA                                                  <  SRR4302533.5489624/94‑1 (MQ=60)

                                               GACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGTTCCCTGTCTCCTTACTTCATCAACAAGCCGGAAA                                                >  SRR4302533.4230203/1‑94 (MQ=60)

                                               GACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAA                                                >  SRR4302533.454432/1‑94 (MQ=60)

                                                 CGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACT                                              >  SRR4302533.3021961/1‑94 (MQ=60)

                                                 CGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACT                                              <  SRR4302533.4717611/94‑1 (MQ=60)

                                                  GGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCCACAAGCCGGCAACTG                                             >  SRR4302533.188384/1‑94 (MQ=60)

                                                  GGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCATGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTG                                             >  SRR4302533.3037034/1‑94 (MQ=60)

                                                   GTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGG                                            <  SRR4302533.1035039/94‑1 (MQ=60)

                                                    TACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGC                                           <  SRR4302533.5668141/94‑1 (MQ=60)

                                                    TACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGC                                           <  SRR4302533.4339263/94‑1 (MQ=60)

                                                     ACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCG                                          >  SRR4302533.4487932/1‑94 (MQ=60)

                                                     ACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCG                                          <  SRR4302533.5673447/94‑1 (MQ=60)

                                                     ACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCG                                          <  SRR4302533.5211444/94‑1 (MQ=60)

                                                     ACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCG                                          >  SRR4302533.1504412/1‑94 (MQ=60)

                                                     ACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCG                                          >  SRR4302533.6186982/1‑94 (MQ=60)

                                                      CCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGGATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACCACCCGGAAACTGGCGC                                         >  SRR4302533.5602687/1‑94 (MQ=60)

                                                       CGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCA                                        >  SRR4302533.4915960/1‑94 (MQ=60)

                                                           CTGCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAG                                    <  SRR4302533.4387908/94‑1 (MQ=60)

                                                             GCAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAA                                  <  SRR4302533.5908246/94‑1 (MQ=60)

                                                              CAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAAC                                 <  SRR4302533.4851514/94‑1 (MQ=60)

                                                              CAGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAAC                                 <  SRR4302533.5417824/94‑1 (MQ=60)

                                                               AGGGCGAACTGGACGTGGTTGAAGGTGTGCTGTTCGGCCGTGGCTACCTTTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACT                                <  SRR4302533.592490/94‑1 (MQ=60)

                                                               AGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTGCCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACT                                <  SRR4302533.5829256/94‑1 (MQ=60)

                                                               AGGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACT                                <  SRR4302533.6075272/94‑1 (MQ=60)

                                                               AGAACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACT                                <  SRR4302533.680263/94‑1 (MQ=60)

                                                                GGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTG                               >  SRR4302533.555421/1‑94 (MQ=60)

                                                                GGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTG                               >  SRR4302533.5190184/1‑94 (MQ=60)

                                                                GGACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTG                               >  SRR4302533.1316000/1‑94 (MQ=60)

                                                                 GACGAACTGGACGTGGTTGAGGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGG                              <  SRR4302533.3721930/94‑1 (MQ=60)

                                                                  ACGAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGA                             <  SRR4302533.2640026/94‑1 (MQ=60)

                                                                    GAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAA                           >  SRR4302533.4315559/1‑94 (MQ=60)

                                                                    GAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAA                           <  SRR4302533.1676492/94‑1 (MQ=60)

                                                                    GAACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAA                           >  SRR4302533.2223201/1‑94 (MQ=60)

                                                                    GAACTGGACGTGGTTGAAGGGATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGCACTGGAAA                           >  SRR4302533.1747393/1‑94 (MQ=60)

                                                                     AACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAG                          >  SRR4302533.668239/1‑94 (MQ=60)

                                                                     AACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAG                          >  SRR4302533.570007/1‑94 (MQ=60)

                                                                     AACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAG                          >  SRR4302533.570008/1‑94 (MQ=60)

                                                                      ACTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGC                         >  SRR4302533.2326484/1‑94 (MQ=60)

                                                                       CTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCC                        <  SRR4302533.4687106/94‑1 (MQ=60)

                                                                       CTGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCC                        >  SRR4302533.5832863/1‑94 (MQ=60)

                                                                        TGGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCC                       >  SRR4302533.5555803/1‑94 (MQ=60)

                                                                         GGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCG                      <  SRR4302533.5517659/94‑1 (MQ=60)

                                                                         GGACGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCG                      <  SRR4302533.4406694/94‑1 (MQ=60)

                                                                           ACGTAGTGGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTT                    <  SRR4302533.2677804/94‑1 (MQ=60)

                                                                            CGTGTTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTC                   <  SRR4302533.3214588/94‑1 (MQ=60)

                                                                            CGTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTC                   <  SRR4302533.861444/94‑1 (MQ=60)

                                                                             GTGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCA                  >  SRR4302533.1603064/1‑94 (MQ=60)

                                                                              TGGTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCAT                 <  SRR4302533.392541/94‑1 (MQ=60)

                                                                                GTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCC               <  SRR4302533.1485904/94‑1 (MQ=60)

                                                                                GTTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCC               <  SRR4302533.1281389/94‑1 (MQ=60)

                                                                                 TTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCT              <  SRR4302533.3599608/94‑1 (MQ=60)

                                                                                 TTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCT              <  SRR4302533.5625491/94‑1 (MQ=60)

                                                                                 TTGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCT              <  SRR4302533.2216590/94‑1 (MQ=60)

                                                                                  TGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTG             <  SRR4302533.750696/94‑1 (MQ=60)

                                                                                  TGAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTG             <  SRR4302533.3763273/94‑1 (MQ=60)

                                                                                   GAAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGC            >  SRR4302533.2153899/1‑94 (MQ=60)

                                                                                    AAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCT           >  SRR4302533.1642897/1‑94 (MQ=60)

                                                                                    AAGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCT           >  SRR4302533.5125116/1‑94 (MQ=60)

                                                                                     AGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTG          >  SRR4302533.1726298/1‑94 (MQ=60)

                                                                                     AGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTG          >  SRR4302533.5493791/1‑94 (MQ=60)

                                                                                     AGGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTG          <  SRR4302533.2233376/94‑1 (MQ=60)

                                                                                      GGTATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGG         <  SRR4302533.6223614/94‑1 (MQ=60)

                                                                                        TATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCT       >  SRR4302533.941787/1‑94 (MQ=60)

                                                                                         ATGCGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTG      <  SRR4302533.3897695/94‑1 (MQ=60)

                                                                                           GCGGTTCGACCGTGGCTCCCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTGAC    <  SRR4302533.739628/94‑1 (MQ=60)

                                                                                            CGGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTGACA   >  SRR4302533.4937841/1‑94 (MQ=60)

                                                                                             GGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTGACAA  >  SRR4302533.4393780/1‑94 (MQ=60)

                                                                                             GGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTGACAA  <  SRR4302533.4689119/94‑1 (MQ=60)

CTGAAGCGATGGACAAAGTCGGTAAAGAAGGCGTTATCACCGTTGAAGACGGTACCGGTCTGCAGGACGAACTGGACGTGGTTGAAGGTATGCAGTTCGACCGTGGCTACCTGTCTCCTTACTTCATCAACAAGCCGGAAACTGGCGCAGTAGAACTGGAAAGCCCGTTCATCCTGCTGGCTGACAA  >  NC_000913/4369090‑4369276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`