Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,003,383 |
(G)7→8 |
coding (184/681 nt) |
ycbF → |
putative chaperone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,003,376 | 1 | . | G | 90.1%
| 470.1
/ 43.2
| 151 | coding (177/681 nt) | ycbF | putative chaperone |
| Reads supporting (aligned to +/- strand): ref base . (10/5); new base G (111/25); total (121/30) |
| Fisher's exact test for biased strand distribution p-value = 1.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
Only 100 of 204 total aligned reads displayed.
GCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGC > NC_000913/1003284‑1003467
|
cagacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑g < 1:3097028/93‑1 (MQ=255)
agacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gg < 2:5825785/93‑1 (MQ=255)
agacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gg > 1:1372645/1‑93 (MQ=255)
agacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gg > 1:7454789/1‑93 (MQ=255)
agacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gg < 1:6383796/93‑1 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggg > 1:5720855/1‑93 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggg > 2:2297386/1‑93 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggg > 2:6524939/1‑93 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggg > 1:6402509/1‑93 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggg < 2:8003390/93‑1 (MQ=255)
acagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggg < 1:3020355/93‑1 (MQ=255)
cagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACGGCCCAACGCGTTGGGCC‑‑ggggg > 1:8061822/1‑93 (MQ=255)
cagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggggg > 2:2004547/1‑93 (MQ=255)
cagaGAATCGATATCTATTTTACTGACTAATACAAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggggg < 1:8516273/93‑1 (MQ=255)
agagAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggggg > 2:1960101/1‑93 (MQ=255)
agagAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggggg > 2:4685741/1‑93 (MQ=255)
agagAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggggg > 1:8287242/1‑93 (MQ=255)
agagAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggggg < 2:4536283/93‑1 (MQ=255)
agagAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggggg < 2:7605585/93‑1 (MQ=255)
gagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggggggg > 1:8529216/1‑93 (MQ=255)
gagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggggggg > 1:2036345/1‑93 (MQ=255)
gagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggggggg > 2:325360/1‑93 (MQ=255)
gagaATCAATATTTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAAGCACCCGCCCAACGCGTGGGGCC‑‑ggggggg < 2:3896498/93‑1 (MQ=255)
gaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑gggggggga > 1:3988875/1‑91 (MQ=255)
gaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑aa < 2:8508310/93‑1 (MQ=255)
aaTCTATATTTATTTTACTGACAAATCCCAGTCAGAAACCCTGGTTTATAAACAGAAAAATCACCCGCCCAAGGCGTTGGGCC‑‑ggggggggaa < 2:6788138/93‑4 (MQ=255)
aaTCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑GAg > 1:3855945/1‑93 (MQ=255)
aaTCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGACCAACGCGTTGGGCC‑‑ggggggggaa > 1:2940536/1‑90 (MQ=255)
aTCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑ggggggggaag > 1:1722399/1‑89 (MQ=255)
cGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCg > 2:5758818/1‑93 (MQ=255)
atatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTc > 1:3826807/1‑93 (MQ=255)
atatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTc > 1:1939340/1‑93 (MQ=255)
atatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTc > 1:4644346/1‑93 (MQ=255)
tatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCg > 1:139860/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGa > 1:3720474/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGa > 2:4392554/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGa > 2:8245137/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGAAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGa < 1:2849307/93‑1 (MQ=255)
tCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑GAGCGTCGAc > 2:3084622/1‑93 (MQ=255)
tCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGAc > 1:6184419/1‑93 (MQ=255)
cTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGGG‑AAGCGTCGAc > 1:5866612/1‑93 (MQ=255)
cTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACa > 1:6047611/1‑93 (MQ=255)
tttttTCTAATTAATCCCAGTCAGGAACCCGGGTTTATAAAAAGAAAAACCACCCCCCCACCGGGTGGGGCCG‑GGGGGGG‑AAGCGTCGACAGt < 2:2258969/92‑1 (MQ=255)
aTTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGt > 1:4174151/1‑93 (MQ=255)
ttttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTg > 1:6848289/1‑93 (MQ=255)
tttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGc < 1:1269755/93‑1 (MQ=255)
ttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGcc > 2:2889238/1‑93 (MQ=255)
ttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGcc > 1:2285016/1‑93 (MQ=255)
ttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGcc > 2:3599661/1‑93 (MQ=255)
ttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGcc > 2:411014/1‑93 (MQ=255)
gACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCAc > 1:8740152/1‑93 (MQ=255)
aTACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTa > 2:3660513/1‑93 (MQ=255)
aTACCAGTCAGGAATCCTGGCCTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTAc < 2:4466150/93‑1 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑GAGCGTCGACAGTGCCAGCACCATTAc > 2:6463351/1‑93 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AGGCGTCGGCAGTGCCAGGACCATTAc > 1:3393002/1‑93 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTat > 2:4329651/1‑92 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTAc > 1:3292120/1‑93 (MQ=255)
caaGTCAGAATCCCTGGCTTATAAACAGTAAAATCAACCGCCCAACGCGTGGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTg < 1:2214790/91‑1 (MQ=255)
gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGcc > 2:7021100/1‑93 (MQ=255)
gTCAGAAATCCTGGTTTATAAACAGAAAAATCAACCGCCCAACGGGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGcc < 2:2567350/93‑1 (MQ=255)
tCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCg > 2:4227863/1‑93 (MQ=255)
ggAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTc > 1:2081414/1‑93 (MQ=255)
gAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc < 1:5817631/93‑1 (MQ=255)
gAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCg > 1:4526489/1‑93 (MQ=255)
tCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGcc > 2:6620022/1‑93 (MQ=255)
ccTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCa > 2:2870934/1‑93 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCCCCATTCCTTGCCCCTCCCCCAc > 2:6820646/1‑93 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 1:7866079/1‑93 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGTGAGCGTCGACAGTGGCAGCAACATTACTGGGCGCTCCGGCAc > 2:8405450/1‑93 (MQ=255)
tGGTTTATAAACAGTAAAAGCAACCGCCCACCGCGTGGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACt < 1:1102266/93‑1 (MQ=255)
tGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGCGAGCGGCGACAGTGGCAGCACCATTACTGGCTCCTCCGcccat > 2:5561189/1‑90 (MQ=255)
ggCTTATTAACAGTAAAATCATCCGCTCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCTACAGTGCCAGCACCATTACTGGCCGCTCCGCCACtt > 2:7813576/1‑93 (MQ=255)
ggCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACtt > 2:3180794/1‑93 (MQ=255)
cTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACtttt > 1:7972350/1‑91 (MQ=255)
ttattaACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt > 1:8438922/1‑93 (MQ=255)
ttataaACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt < 2:6045856/93‑1 (MQ=255)
tattaACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCCCCATTACTGGCCGCTCCGCCACTTTTtc > 1:6759202/1‑93 (MQ=255)
tattaACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtc > 2:1591762/1‑93 (MQ=255)
attaACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtc > 1:4995211/1‑93 (MQ=255)
attaACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGGCGACAGTGCCAGCACCATTACTGGCCTCTCCCCCACTTATtct > 1:5327031/1‑93 (MQ=255)
aaaCAGTAAAATCACCCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCt < 2:3760653/92‑1 (MQ=255)
cAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGa > 1:7733629/1‑93 (MQ=255)
gTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAg > 1:7504043/1‑93 (MQ=255)
aaaTCACCCGCCCAACGCGTTGGCCCA‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGccc < 2:5923677/93‑1 (MQ=255)
cAACCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTa > 1:7946416/1‑93 (MQ=255)
aaCCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAc > 2:6975829/1‑93 (MQ=255)
aaCCGCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAc > 2:7212135/1‑93 (MQ=255)
aaCCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑GAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACg > 1:8200665/1‑93 (MQ=255)
gCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACa > 1:2424590/1‑93 (MQ=255)
gCCCAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACa > 1:1008557/1‑93 (MQ=255)
cAACGCGTTGGGCCG‑GGGGGGG‑GATCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGCACCACAGGc > 2:8681739/1‑93 (MQ=255)
cAACGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGc > 2:5840025/1‑93 (MQ=255)
aaCGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa > 2:5492296/1‑93 (MQ=255)
aCGCGTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAc > 2:7410486/1‑93 (MQ=255)
gcgTTGGGCCG‑GGGGGGG‑GAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGt > 1:5699439/1‑93 (MQ=255)
cgTTGGGCC‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCCCCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTg > 2:2814770/1‑93 (MQ=255)
gTTGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTg > 2:6268653/1‑93 (MQ=255)
ttGGGCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgc < 1:7336455/93‑1 (MQ=255)
gggCCG‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcgc > 2:5662117/1‑93 (MQ=255)
cc‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGc < 2:4913565/93‑1 (MQ=255)
|
GCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG‑AAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGC > NC_000913/1003284‑1003467
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAC > NC_000913/1003290‑1003474
|
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGG > SRR4302541.2056011/1‑94 (MQ=60)
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGG > SRR4302541.8620972/1‑94 (MQ=60)
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGGA > SRR4302541.4028383/1‑94 (MQ=60)
GAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGgaa < SRR4302541.4598441/94‑4 (MQ=60)
GAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGGAG > SRR4302541.3894740/1‑94 (MQ=60)
GAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGACCAACGCGTT‑GGGC‑C‑‑GGGGGGGgaa > SRR4302541.2970111/1‑91 (MQ=60)
AATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAG > SRR4302541.1739234/1‑94 (MQ=60)
ATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCTCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGC > SRR4302541.6025088/1‑94 (MQ=60)
ATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGC < SRR4302541.2414758/94‑1 (MQ=60)
CGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGgcagcgc > SRR4302541.1509456/1‑87 (MQ=60)
GATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTC > SRR4302541.4691629/1‑94 (MQ=60)
GATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTC > SRR4302541.1958021/1‑94 (MQ=60)
GATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTC > SRR4302541.3865362/1‑94 (MQ=60)
ATATCTTTTTTACTAAATAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCACCCGCCAAGCGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCG < SRR4302541.8594671/94‑1 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCG > SRR4302541.7467124/1‑94 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCG < SRR4302541.5822672/94‑1 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCG > SRR4302541.140936/1‑94 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCG > SRR4302541.2662746/1‑94 (MQ=60)
TATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGACGCGTCGA > SRR4302541.3876990/1‑94 (MQ=60)
TATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGA > SRR4302541.3757973/1‑94 (MQ=60)
ATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGTC‑CG‑GGGGGGGAAGCGTCGAC > SRR4302541.2945848/1‑94 (MQ=60)
ATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGAC > SRR4302541.6247606/1‑94 (MQ=60)
ATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGAAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGAC < SRR4302541.2877964/94‑1 (MQ=60)
TCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CGGGGGGGGGAAGCGTCGAC > SRR4302541.5926295/1‑94 (MQ=60)
TCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACA > SRR4302541.6109462/1‑94 (MQ=60)
TATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGT > SRR4302541.4215546/1‑94 (MQ=60)
TTTTTACTGACAAATACCAGTCAGAAATCCTGGTTTATAAACAGAAAAATCACCCGCCCAACGCGTG‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTG < SRR4302541.4182148/94‑1 (MQ=55)
ATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTG > SRR4302541.6921496/1‑94 (MQ=60)
TTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCC > SRR4302541.2307125/1‑94 (MQ=60)
TTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCC < SRR4302541.1282394/94‑1 (MQ=60)
TTTACGAACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAACCAGCCGCCCACGGCGTG‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCC < SRR4302541.629223/94‑1 (MQ=60)
CTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCC > SRR4302541.1862834/1‑94 (MQ=60)
CTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCA > SRR4302541.8625585/1‑94 (MQ=60)
CTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCA > SRR4302541.8625727/1‑94 (MQ=60)
TGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCAC > SRR4302541.8833702/1‑94 (MQ=60)
TGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCAC > SRR4302541.4895347/1‑94 (MQ=60)
GACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACC > SRR4302541.7984311/1‑94 (MQ=60)
TAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGAAGCGTCGACAGGGCCAGCACCATTA > SRR4302541.5905962/1‑94 (MQ=60)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAGGCGTCGGCAGTGCCAGGACCATTAC > SRR4302541.3426853/1‑94 (MQ=60)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTAC > SRR4302541.3325258/1‑94 (MQ=60)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTAC > SRR4302541.3426852/1‑94 (MQ=60)
caagtcagaatcCCTGGCTTATAAACAGTAAAATCAACCGCCCAACGCGTG‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGG < SRR4302541.2236267/82‑1 (MQ=60)
CCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGC > SRR4302541.2028105/1‑94 (MQ=60)
CAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGC > SRR4302541.3963133/1‑94 (MQ=60)
CAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGC < SRR4302541.1056743/94‑1 (MQ=60)
cagtcagaattctggttttataaaaagtaaaaccaccccccaagggggtgGGGC‑C‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCC < SRR4302541.1568066/44‑1 (MQ=60)
AGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCC > SRR4302541.6697590/1‑94 (MQ=60)
CAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCT > SRR4302541.3152852/1‑94 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTC > SRR4302541.4102664/1‑94 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTC > SRR4302541.2101564/1‑94 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTC > SRR4302541.8489311/1‑94 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGACGCTC > SRR4302541.2101565/1‑94 (MQ=60)
AGGAACCCTGTCTTATAAAAAGAAAAACCACCCGCCCAGCGGGTT‑GGGC‑C‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCC < SRR4302541.207130/94‑1 (MQ=60)
gggacctctgatttataaaaaaaaaaaccacccccccACGCGTT‑GGGC‑CCGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTC < SRR4302541.2015373/57‑1 (MQ=60)
GGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG > SRR4302541.4572176/1‑94 (MQ=60)
GAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG < SRR4302541.5876750/94‑1 (MQ=60)
AATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGC > SRR4302541.726328/1‑94 (MQ=60)
tcttgctttataaacaaaaaaatcaccccccaacCGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCA < SRR4302541.8316551/60‑1 (MQ=60)
tatgatacaaaaaaaaaacaccaccccaccgcgcggtggtggggggcggGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG < SRR4302541.6618335/45‑1 (MQ=60)
gcctgtatttttaacaaaaaaaccgcccccccatgctGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCA < SRR4302541.5627182/57‑1 (MQ=60)
CCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAC > SRR4302541.7952494/1‑94 (MQ=60)
ctccgtgtttataaaaacaaaaccccccccccccccgtggtggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCC < SRR4302541.1802124/47‑1 (MQ=60)
tcctgttttataaacaaaaaaaccacccgcccaaggggttggtccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCA < SRR4302541.563116/48‑1 (MQ=60)
tatggtcaaaaagagcccacgcccccgacaccggggatgatcagggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCA < SRR4302541.1938374/48‑1 (MQ=60)
attttttttataaagataaaaatgaacccccaaccgtgtgggcgcgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCA < SRR4302541.7305438/48‑1 (MQ=60)
TGGTTTATAAACAGTAAAAGCAACCGCCCACCGCGTG‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT < SRR4302541.1112585/94‑1 (MQ=60)
GCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTTT > SRR4302541.8060197/1‑94 (MQ=60)
CTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CGGGGGGGGGAAGCGTCGACAGTACAGCCACCATTACTGACCGCTCCGCCAGTTAT > SRR4302541.1311788/1‑94 (MQ=60)
CTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATT > SRR4302541.8530074/1‑94 (MQ=60)
TTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCCCCATTACTGGCCGCTCCGCCACTTTTTC > SRR4302541.6831487/1‑94 (MQ=60)
TTATTAAAAGTAAAATCAACCGCCCAACGGGTT‑GGGC‑CG‑GGGGGGGAAGCGTTGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTC < SRR4302541.8171670/94‑1 (MQ=60)
TATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CGGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTC > SRR4302541.5046519/1‑94 (MQ=60)
TATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGGCGACAGTGCCAGCACCATTACTGGCCTCTCCCCCACTTATTCT > SRR4302541.5381841/1‑94 (MQ=60)
taaaaaaaaaaaaaaacccccccccccggggtggggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATT < SRR4302541.1730339/54‑1 (MQ=60)
ATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTC > SRR4302541.7553509/1‑94 (MQ=60)
AACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTG > SRR4302541.7740558/1‑94 (MQ=60)
ttaaaagtaaacccacccgccaagcggttgggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCC < SRR4302541.357525/58‑1 (MQ=60)
ACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGA > SRR4302541.7815911/1‑94 (MQ=60)
taacccaagattattcaccactagagagtgaaacgGGGGGGGAAGCGTCGACAGTGCCAGCCCCATTACTGGCCCCTCCGCCACTTATTCTCCT < SRR4302541.6852940/59‑1 (MQ=60)
CAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTGGACAGTGCCAGCACTCTTACTGGCCGCTCCGCCACTTCTTCTACTGAG > SRR4302541.2375607/1‑94 (MQ=60)
AGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAG > SRR4302541.8076412/1‑94 (MQ=60)
AGTAAAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAG > SRR4302541.7584253/1‑94 (MQ=60)
aaaaaatgacaccagcgttactttgggcggcgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAA < SRR4302541.6441500/62‑1 (MQ=60)
aaaaaaaccacccaccggggcggggtgcgcggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAA < SRR4302541.6441501/62‑1 (MQ=60)
agaaaaacaaacgcccgcccgggtagggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAG < SRR4302541.5561356/63‑1 (MQ=60)
AAAACCACCCGCCCATCGCGTG‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCC < SRR4302541.426854/94‑1 (MQ=60)
AAATCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCG > SRR4302541.7827762/1‑94 (MQ=60)
AACCACCCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGG < SRR4302541.4120993/94‑1 (MQ=60)
TCAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTA > SRR4302541.8033953/1‑94 (MQ=60)
atccaaccccccagcgcttgggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGG < SRR4302541.229250/68‑1 (MQ=60)
CACCCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302541.5945850/94‑1 (MQ=60)
CAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302541.1390347/94‑1 (MQ=60)
CAACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302541.3030608/94‑1 (MQ=60)
CAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACG > SRR4302541.8290160/1‑94 (MQ=60)
cccccccccacggggggggggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGT < SRR4302541.7801027/69‑1 (MQ=60)
AACCGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACG > SRR4302541.644583/1‑94 (MQ=60)
ccaacccccacggggtgggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTA < SRR4302541.364065/70‑1 (MQ=60)
CGCCCAACGCGTT‑GGGC‑CGGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGAC > SRR4302541.6279686/1‑94 (MQ=60)
CGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA > SRR4302541.2448541/1‑94 (MQ=60)
CGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA > SRR4302541.1017903/1‑94 (MQ=60)
CGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA > SRR4302541.3758686/1‑94 (MQ=60)
CGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA > SRR4302541.6190048/1‑94 (MQ=60)
CGCCCAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTAGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA > SRR4302541.8615024/1‑94 (MQ=60)
CGCCCAACGCCTTGGGGG‑G‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA < SRR4302541.2873213/94‑1 (MQ=60)
CAACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCA > SRR4302541.8373926/1‑94 (MQ=60)
ccaacgggggggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGG < SRR4302541.7040501/77‑1 (MQ=60)
ACCGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGGGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302541.8564446/94‑1 (MQ=60)
AACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCTGCTCCGCCACTGATACTCCTGAAGCCCGGTACGACAGGCAC > SRR4302541.5227118/1‑94 (MQ=60)
AACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC > SRR4302541.803165/1‑94 (MQ=60)
ACGCGTT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACG > SRR4302541.577069/1‑94 (MQ=60)
CGCGTT‑GGGC‑CG‑GGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGT > SRR4302541.5757561/1‑94 (MQ=60)
ggcggtgggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302541.6743026/80‑1 (MQ=60)
GCGTT‑GGGCGG‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTT < SRR4302541.4807054/94‑1 (MQ=60)
ggggtgggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTT < SRR4302541.3053697/83‑1 (MQ=60)
TT‑GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCG < SRR4302541.7414793/94‑1 (MQ=60)
gtgggcgcggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTG < SRR4302541.248036/84‑1 (MQ=60)
GGGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCT > SRR4302541.479196/1‑94 (MQ=60)
GGC‑CG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGACGCCCGGTACCACCGGCACGTTGCGCTT > SRR4302541.6488713/1‑94 (MQ=60)
ggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCT < SRR4302541.1594982/92‑1 (MQ=60)
GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAG < SRR4302541.8406336/94‑1 (MQ=60)
GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAG < SRR4302541.6101596/94‑1 (MQ=60)
GGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCCGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGA < SRR4302541.7277496/94‑1 (MQ=60)
GGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAC > SRR4302541.4103737/1‑94 (MQ=60)
GGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAC > SRR4302541.306997/1‑94 (MQ=60)
|
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGC‑C‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAC > NC_000913/1003290‑1003474
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
