Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,003,383 |
(G)7→8 |
coding (184/681 nt) |
ycbF → |
putative chaperone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,003,376 | 1 | . | G | 98.5%
| 456.0
/ ‑0.5
| 134 | coding (177/681 nt) | ycbF | putative chaperone |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (114/18); total (115/19) |
| Fisher's exact test for biased strand distribution p-value = 2.64e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 |
Only 100 of 167 total aligned reads displayed.
GCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCT > NC_000913/1003284‑1003464
|
gCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGcc < 2:3897956/93‑1 (MQ=255)
cagacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑g < 2:2771793/93‑1 (MQ=255)
cagacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑g < 2:3981754/93‑1 (MQ=255)
agacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑gg > 1:3877228/1‑93 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggg > 1:1728262/1‑93 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggg < 2:3614968/93‑1 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggg < 2:4324921/93‑1 (MQ=255)
gacagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggg > 1:4673553/1‑93 (MQ=255)
cagaGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggggg > 1:2597950/1‑93 (MQ=255)
gagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggggggg > 1:5701294/1‑93 (MQ=255)
gagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggggggg > 1:1775661/1‑93 (MQ=255)
gagaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggggggg > 2:5944524/1‑93 (MQ=255)
gaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑gggggggga > 1:4640290/1‑91 (MQ=255)
aaTCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggggggggaa > 2:1056019/1‑90 (MQ=255)
atctatatctatTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑ggggggggaag < 1:2192721/93‑5 (MQ=255)
cGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCg > 1:4094688/1‑93 (MQ=255)
gATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGt > 2:4852740/1‑93 (MQ=255)
tatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCg > 2:5098489/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGa > 2:6188995/1‑93 (MQ=255)
cTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACa > 1:6252647/1‑93 (MQ=255)
cTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACa > 2:1485894/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAg > 2:4441099/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAg > 2:4876170/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAg > 1:5456596/1‑93 (MQ=255)
aTTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGt > 2:2386551/1‑93 (MQ=255)
aCTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAg > 1:1153253/1‑93 (MQ=255)
aCTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAg > 1:4431273/1‑93 (MQ=255)
tGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGCGCCAgga > 2:5809408/1‑91 (MQ=255)
gACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCAc > 2:1129744/1‑93 (MQ=255)
gACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCAc > 2:5981754/1‑93 (MQ=255)
cTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCa > 1:2819622/1‑93 (MQ=255)
aaTACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCAtt > 2:2203558/1‑93 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTAc > 1:3680817/1‑93 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTAc > 1:98596/1‑93 (MQ=255)
ccAGTCGGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGATGCGTCGACAGTGCCAGCACCATTACTg > 1:5568901/1‑93 (MQ=255)
ccAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTg > 1:4591870/1‑93 (MQ=255)
ccAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTg > 1:2296026/1‑93 (MQ=255)
ccAGTCAGGAACCCTGGCTTATAAACAGTAAAACCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTg < 2:1666831/93‑1 (MQ=255)
caaGTCAGGAATCCTGTCTTATAAACAGAAAAATCACCCCCCAAACGCGTG‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTg < 1:6068141/91‑1 (MQ=255)
cAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTgg > 1:45169/1‑93 (MQ=255)
aGTCAGAATCCCTGTTTTATAAAAAGAAAAACCACCCGCCCACCGGGTG‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGc < 1:5918657/93‑1 (MQ=255)
aGTAAGGAATCCTGGCTTATAAACAGAAAAACCAACCGCCCAAGGGGTG‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGc < 2:736441/93‑1 (MQ=255)
gTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTggac > 1:4477237/1‑91 (MQ=255)
tCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCg > 1:4658101/1‑93 (MQ=255)
aGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCt < 2:5250578/93‑1 (MQ=255)
aGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCt > 1:4972915/1‑93 (MQ=255)
gAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc > 2:202936/1‑93 (MQ=255)
gAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc > 1:2289376/1‑93 (MQ=255)
gAATCCTGGCTTATAAACAGTAAAATCACCCGCCCAGCGTTTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc < 2:2939651/93‑1 (MQ=255)
tCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGTAGCGTCGACAGTGCCAGCACCATTACTGGCGGCTCCGcc > 2:6087931/1‑93 (MQ=255)
tCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGcc > 2:6024196/1‑93 (MQ=255)
tCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGcc > 2:5681178/1‑93 (MQ=255)
ccTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 2:2063701/1‑93 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 1:5330622/1‑93 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 1:3575356/1‑93 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 2:5200298/1‑93 (MQ=255)
gCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTa > 1:1155176/1‑93 (MQ=255)
ttattaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt > 2:5390815/1‑93 (MQ=255)
ttattaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt > 2:5955941/1‑93 (MQ=255)
tattaACAGTAAAATCAACCGCCCACCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtc < 1:4009837/93‑1 (MQ=255)
tattaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCGGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAtt > 1:4146015/1‑93 (MQ=255)
tattaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtc > 1:1959933/1‑93 (MQ=255)
attaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtct > 2:3358158/1‑93 (MQ=255)
attaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGATCCCCCACTTATtct > 1:3764741/1‑93 (MQ=255)
ttaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtctc > 2:1748008/1‑93 (MQ=255)
ttaACAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtctc > 2:1600460/1‑93 (MQ=255)
taACAGTAAAACAAACCCCCCAAGGCGTTGGGGCG‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTcc < 2:4111904/93‑1 (MQ=255)
aCAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTg > 2:2323873/1‑93 (MQ=255)
aCAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTg > 1:515579/1‑93 (MQ=255)
aCAGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTg > 1:3252652/1‑93 (MQ=255)
aGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGaa > 2:6447724/1‑93 (MQ=255)
aGTAAAATCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGaa > 1:2998050/1‑93 (MQ=255)
agaaaaTGCACCCCCCAACGGATT‑GGGGCAGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGaa < 1:499978/91‑1 (MQ=255)
aaacTCACCCGCCCAACGCGTT‑GGCCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGcc < 1:863168/93‑1 (MQ=255)
aaaaTCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGCAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGcc > 1:2064231/1‑93 (MQ=255)
aaaaTCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGcc > 2:5543430/1‑93 (MQ=255)
aaaaTCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGcc > 1:922067/1‑93 (MQ=255)
aaaTCAACCGCCCACCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGccc < 1:2014685/93‑1 (MQ=255)
aaTCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCg > 1:2844723/1‑93 (MQ=255)
tCAACCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGt > 1:2314956/1‑93 (MQ=255)
aaCCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTag > 2:6064521/1‑92 (MQ=255)
aaCCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAc > 2:3708643/1‑93 (MQ=255)
aCCGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACg > 2:2495351/1‑93 (MQ=255)
ccGCCCAACGGGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGa < 1:6448040/93‑1 (MQ=255)
ccGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGa > 1:5685666/1‑93 (MQ=255)
ccGCCCAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGa > 2:2100366/1‑93 (MQ=255)
cccAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAg > 1:6053249/1‑93 (MQ=255)
cccAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAg > 1:1629431/1‑93 (MQ=255)
ccAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAgg > 2:3075501/1‑93 (MQ=255)
ccAACGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAgg > 2:2608838/1‑93 (MQ=255)
aaCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa > 2:3765279/1‑93 (MQ=255)
aaCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa > 2:2034351/1‑93 (MQ=255)
aaCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa > 2:3037493/1‑93 (MQ=255)
aaCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa > 1:6448948/1‑93 (MQ=255)
aCGCGTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa < 1:1804054/92‑1 (MQ=255)
cgcgTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACg > 2:2833180/1‑93 (MQ=255)
gTT‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTg > 1:662974/1‑93 (MQ=255)
tt‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgc > 2:621954/1‑93 (MQ=255)
t‑GGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcg > 1:22303/1‑93 (MQ=255)
ggccc‑‑GGGGGGGAAGCGTCGACAGTCCCAGCACCATTACTGGCCGCTCCGACACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCt < 2:4025797/90‑1 (MQ=255)
|
GCAGACAGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTT‑GGGCC‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCT > NC_000913/1003284‑1003464
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGG > NC_000913/1003290‑1003476
|
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG > SRR4302534.5855735/1‑94 (MQ=60)
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGG > SRR4302534.1821773/1‑94 (MQ=60)
GAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGG < SRR4302534.959318/94‑1 (MQ=60)
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGGA > SRR4302534.4766210/1‑94 (MQ=60)
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGGA > SRR4302534.5160180/1‑94 (MQ=60)
ATCTATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGC < SRR4302534.2250692/94‑1 (MQ=60)
TCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCG > SRR4302534.4204734/1‑94 (MQ=60)
CGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGT > SRR4302534.2469254/1‑94 (MQ=60)
CGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGgtggcgg > SRR4302534.4520482/1‑87 (MQ=60)
GATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTC > SRR4302534.5984934/1‑94 (MQ=60)
GATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGgcagcgtc > SRR4302534.6502820/1‑86 (MQ=60)
atatttatttacctaACTAATACCAGTCAGGAATCCTGGCTTATAAACAGAAAAAACACCCGCCCACCGCGTGGGGCCG‑GGGGGGGAAGCGTCG < SRR4302534.4053049/79‑1 (MQ=42)
ATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGAC > SRR4302534.1871995/1‑94 (MQ=60)
TCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGGGTCGACA > SRR4302534.385703/1‑94 (MQ=60)
TCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACA > SRR4302534.6422151/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAG > SRR4302534.472638/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAG > SRR4302534.674697/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAG > SRR4302534.5604486/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAG > SRR4302534.5603632/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGAGTCGACAG > SRR4302534.2810745/1‑94 (MQ=60)
ATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTG > SRR4302534.2225852/1‑94 (MQ=60)
TACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAG > SRR4302534.4550922/1‑94 (MQ=60)
TACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAG > SRR4302534.1183485/1‑94 (MQ=60)
TACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGAAAGTGCCAG > SRR4302534.5830167/1‑94 (MQ=60)
ACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGC > SRR4302534.2342043/1‑94 (MQ=60)
ACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCA > SRR4302534.2893767/1‑94 (MQ=60)
CTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCAT > SRR4302534.3740311/1‑94 (MQ=60)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTAC > SRR4302534.101228/1‑94 (MQ=60)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTAC > SRR4302534.3779769/1‑94 (MQ=60)
ACCAGTCGGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGATGCGTCGACAGTGCCAGCACCATTACTG > SRR4302534.5719287/1‑94 (MQ=60)
ACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTG > SRR4302534.2356973/1‑94 (MQ=60)
ACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTG > SRR4302534.4716491/1‑94 (MQ=60)
CCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGG > SRR4302534.46371/1‑94 (MQ=60)
CCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGG > SRR4302534.3251959/1‑94 (MQ=60)
CAAGTCAGGAATCCTGTCTTATAAACAGAAAAATCACCCCCCAAACGCGTGGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGG < SRR4302534.6233115/94‑1 (MQ=53)
AGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCC > SRR4302534.2932970/1‑94 (MQ=60)
AGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGAC > SRR4302534.4598364/1‑94 (MQ=60)
attcaggaatttcgtttaataagcagaaaacccccccgcgcacggcggggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCC < SRR4302534.355554/39‑1 (MQ=60)
agtcagaatccctgttttataaaaagaaaaaccacccgcccaccgggtggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCC < SRR4302534.6079364/39‑1 (MQ=60)
GTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCG > SRR4302534.4784581/1‑94 (MQ=60)
tggtattcttgttTTATTAACAGTAAAATCACCCGCCCAGCGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCT < SRR4302534.1857350/81‑1 (MQ=60)
CAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCT > SRR4302534.5107538/1‑94 (MQ=60)
CAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCT > SRR4302534.4888464/1‑94 (MQ=60)
CAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGAGTCGACAGTGCCAGCACCATTACTGGCCGgc > SRR4302534.1424170/1‑92 (MQ=60)
gagaaatcctgttttaaaaagagaaaaacaacccccccagcgtgtggcccggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCT < SRR4302534.5982774/42‑1 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTC > SRR4302534.4583625/1‑94 (MQ=60)
aggattcctggattattaacattaaacccacccgcccggcgggttgggcggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTC < SRR4302534.6379990/43‑1 (MQ=60)
TGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGGTGGGCCG‑GGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCC > SRR4302534.4798587/1‑94 (MQ=60)
GGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCC > SRR4302534.2350143/1‑94 (MQ=60)
CCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAC > SRR4302534.3671522/1‑94 (MQ=60)
CCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAC > SRR4302534.5474385/1‑94 (MQ=60)
GGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTA > SRR4302534.1185469/1‑94 (MQ=60)
TTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATT > SRR4302534.4257917/1‑94 (MQ=60)
TTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTC > SRR4302534.2011227/1‑94 (MQ=60)
ttataaaaaaaaaacccacccccccagcgcgtgggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTC < SRR4302534.470576/55‑1 (MQ=60)
taaaaaaaaaaaaaccaaccccccaagcgggtgggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTC < SRR4302534.5873841/55‑1 (MQ=60)
TATTAACAGTAAAATCAACCGCCCACCGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCT < SRR4302534.4117214/94‑1 (MQ=60)
TATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGATCCCCCACTTATTCT > SRR4302534.3865808/1‑94 (MQ=60)
ataaaagaaaaaacCAACCCCCCACCGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTC < SRR4302534.6295445/80‑1 (MQ=60)
TAACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCT > SRR4302534.871773/1‑94 (MQ=60)
AACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTG > SRR4302534.3339287/1‑94 (MQ=60)
AACAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTG > SRR4302534.528404/1‑94 (MQ=60)
aaaaaaaacacccccccccgggtggggggcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGA < SRR4302534.1411402/61‑1 (MQ=60)
CAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAA > SRR4302534.4682661/1‑94 (MQ=60)
CAGTAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAA > SRR4302534.3076453/1‑94 (MQ=60)
agaaaatgcaccccccaacggattggggcagGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAG < SRR4302534.512434/63‑1 (MQ=60)
TAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGCAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCC > SRR4302534.2118207/1‑94 (MQ=60)
TAAAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCC > SRR4302534.945550/1‑94 (MQ=60)
AAACTCACCCGCCCAACGCGTTGGCCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCC < SRR4302534.884961/94‑1 (MQ=60)
AAATCAACCGCCCACCGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCG < SRR4302534.2067408/94‑1 (MQ=60)
AAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCG > SRR4302534.2919467/1‑94 (MQ=60)
AAATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCG > SRR4302534.1766639/1‑94 (MQ=60)
ATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGT > SRR4302534.2074862/1‑94 (MQ=60)
ATCAACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGT > SRR4302534.2376386/1‑94 (MQ=60)
cccccccgccgggggggggggcgggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGT < SRR4302534.225143/69‑1 (MQ=60)
ACCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGA > SRR4302534.5839640/1‑94 (MQ=60)
CCGCCCAACGGGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGAC < SRR4302534.6621816/94‑1 (MQ=60)
CCGCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGAC > SRR4302534.6081690/1‑94 (MQ=60)
GCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGAgcg > SRR4302534.1847615/1‑91 (MQ=60)
GCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAG > SRR4302534.6217851/1‑94 (MQ=60)
GCCCAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAG > SRR4302534.1671927/1‑94 (MQ=60)
CAACGCGTTGGGCCG‑GGGGGGGTAGCGTCGACAGTGCCAGCCCCATTACTGGacgccccccccccttttcttcccacacaccgccccgtcacgc > SRR4302534.5694198/1‑52 (MQ=39)
CAACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCA > SRR4302534.6622744/1‑94 (MQ=60)
catggggtggtgctgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCA < SRR4302534.1779369/79‑1 (MQ=60)
cagggggtggggcggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCA < SRR4302534.258553/79‑1 (MQ=60)
AACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302534.1850903/94‑1 (MQ=60)
gcggctcaggccgggcGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGCCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302534.2828782/78‑1 (MQ=60)
ctgggtgcggccggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302534.5731041/80‑1 (MQ=60)
agcgtgtggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302534.5970722/80‑1 (MQ=60)
ACGCGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACG > SRR4302534.541378/1‑94 (MQ=60)
gcggggggggcggGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACG < SRR4302534.506973/81‑1 (MQ=60)
tcgctggcaagcggggtGAAGCGTAGACAGTGCCAGCGCCATTGCTGGCTGCTCCGCCACTTATTCTCCTGAGGCCCGGGACGACAGGCACGTT < SRR4302534.1920377/77‑1 (MQ=58)
gagaagggccgGGGGGGGAAGCGTCGCCAGTGCCAGCCCCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTCCGACAGGCACGTT < SRR4302534.5792983/83‑1 (MQ=60)
CGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTG > SRR4302534.4845458/1‑94 (MQ=60)
CGTTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTG > SRR4302534.679100/1‑94 (MQ=60)
ggtggggccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTG < SRR4302534.651888/84‑1 (MQ=60)
GTGGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGC < SRR4302534.4136655/94‑1 (MQ=60)
TTGGGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCG > SRR4302534.22894/1‑94 (MQ=60)
GGCCG‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTT < SRR4302534.99333/94‑1 (MQ=60)
GGCCCGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCT < SRR4302534.4723237/94‑1 (MQ=60)
GGCCCGGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCT < SRR4302534.2904931/94‑1 (MQ=60)
gcccgGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTT < SRR4302534.99332/89‑1 (MQ=60)
CG‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCT > SRR4302534.262631/1‑94 (MQ=60)
CG‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCT < SRR4302534.933759/94‑1 (MQ=60)
G‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTG > SRR4302534.954246/1‑94 (MQ=60)
GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAG > SRR4302534.2373130/1‑94 (MQ=60)
GGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAG > SRR4302534.1402379/1‑94 (MQ=60)
GGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGA < SRR4302534.5118824/94‑1 (MQ=60)
GGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGA < SRR4302534.1546484/94‑1 (MQ=60)
GGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGA < SRR4302534.1093063/94‑1 (MQ=60)
GGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAA > SRR4302534.2432505/1‑94 (MQ=60)
GGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACG < SRR4302534.5872795/94‑1 (MQ=60)
GGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACG > SRR4302534.5281509/1‑94 (MQ=60)
GGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACG < SRR4302534.2032972/94‑1 (MQ=60)
GAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGG < SRR4302534.5580407/94‑1 (MQ=60)
|
AGAGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCC‑‑GGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGG > NC_000913/1003290‑1003476
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
