Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,066,017	T→C	F404L (TTT→CTT)	agp →	periplasmic glucose‑1‑phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,066,017	0	T	C	100.0%	1023.8 / NA	293	F404L (TTT→CTT)	agp	periplasmic glucose‑1‑phosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (134/159); total (134/159)

Only 100 of 312 total aligned reads displayed.

GCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGA  >  NC_000913/1065927‑1066106

gCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGctt                                                                                         >  2:2244038/1‑93 (MQ=255)

  gTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGa                                                                                       >  2:183518/1‑93 (MQ=255)

   ttAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGAt                                                                                      <  2:4560603/93‑1 (MQ=255)

    tAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATa                                                                                     <  1:6754441/93‑1 (MQ=255)

    tAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATa                                                                                     >  2:8234395/1‑93 (MQ=255)

       cccTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCg                                                                                  >  2:5595434/1‑93 (MQ=255)

       cccTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCg                                                                                  >  2:5319591/1‑93 (MQ=255)

        ccTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCgt                                                                                 <  2:5787681/93‑1 (MQ=255)

         cTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCgtg                                                                                >  2:3403880/1‑93 (MQ=255)

          tGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCgtgt                                                                               >  2:177565/1‑93 (MQ=255)

          tGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCgtgt                                                                               <  2:7030300/93‑1 (MQ=255)

           gCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGtt                                                                              >  2:8505019/1‑93 (MQ=255)

            cAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtg                                                                             >  1:5911491/1‑93 (MQ=255)

             aGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtga                                                                            <  2:8419070/93‑1 (MQ=255)

             aGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtga                                                                            <  1:7676522/93‑1 (MQ=255)

              ggCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaa                                                                           >  1:72751/1‑93 (MQ=255)

               gCACCTGCTGAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaat                                                                          <  2:6436469/93‑1 (MQ=255)

                 aCCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaatga                                                                        >  1:7771572/1‑93 (MQ=255)

                 aCCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaatga                                                                        <  2:8767754/93‑1 (MQ=255)

                   cTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAg                                                                      <  1:8398983/93‑1 (MQ=255)

                    tGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGc                                                                     <  2:4332962/93‑1 (MQ=255)

                    tGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGc                                                                     <  1:2819183/93‑1 (MQ=255)

                     gcgcAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCg                                                                    <  1:2462613/93‑1 (MQ=255)

                      cgcAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTGCCGCCCGATGGATAAGCTTGATAGCGTGTAGAATGAAGCgg                                                                   >  2:7839201/1‑93 (MQ=255)

                       gcAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGt                                                                  <  1:5582885/93‑1 (MQ=255)

                       gcAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCACGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGt                                                                  >  2:4835336/1‑93 (MQ=255)

                        cAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTg                                                                 >  1:5208509/1‑93 (MQ=255)

                        cAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTg                                                                 <  1:2923167/93‑1 (MQ=255)

                          gCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGaa                                                               >  1:5440351/1‑93 (MQ=255)

                           cGTTTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGaaa                                                              <  1:5829704/93‑1 (MQ=255)

                            gtgtGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAAt                                                             <  2:6718234/93‑1 (MQ=255)

                             tgtgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATa                                                            >  1:5522271/1‑93 (MQ=255)

                              gtgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATaa                                                           <  1:1647306/93‑1 (MQ=255)

                              gtgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATaa                                                           <  1:7125478/93‑1 (MQ=255)

                                gACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACa                                                         <  1:4399278/93‑1 (MQ=255)

                                  cGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGa                                                       >  1:1177823/1‑93 (MQ=255)

                                        aaTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTc                                                 <  2:7598315/93‑1 (MQ=255)

                                        aaTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTc                                                 <  1:3950313/93‑1 (MQ=255)

                                        aaTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTc                                                 >  1:3720258/1‑93 (MQ=255)

                                         aTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcc                                                <  2:4877546/93‑1 (MQ=255)

                                         aTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcc                                                <  2:7645673/93‑1 (MQ=255)

                                         aTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcc                                                >  2:7412065/1‑93 (MQ=255)

                                          ttAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTccc                                               <  1:3789294/93‑1 (MQ=255)

                                          ttAAGCCGTCGCCCGATAGACGCTGATGGTTTCTGCACGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTccc                                               <  2:6387208/93‑1 (MQ=255)

                                          atAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTccc                                               <  1:5686038/92‑1 (MQ=255)

                                           tAAGCGGTTTCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcccc                                              <  1:6161236/93‑1 (MQ=255)

                                           tAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcccc                                              <  1:1746758/93‑1 (MQ=255)

                                            aaGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTccccc                                             <  1:7051287/93‑1 (MQ=255)

                                             aGCTGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCcg                                            <  2:6156967/93‑1 (MQ=255)

                                              gCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCcgc                                           <  2:2302360/93‑1 (MQ=255)

                                                 gTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCgag                                        >  2:510147/1‑93 (MQ=255)

                                                 gTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCACCGCgag                                        >  2:6065678/1‑93 (MQ=255)

                                                  ttGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCgaga                                       <  2:799549/93‑1 (MQ=255)

                                                  gtGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCgaga                                       <  1:1989308/92‑1 (MQ=255)

                                                   tGCCCGATAGCCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGaa                                      <  1:3336424/93‑1 (MQ=255)

                                                   tGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGaa                                      <  1:5389377/93‑1 (MQ=255)

                                                   tGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGaa                                      <  2:7487718/93‑1 (MQ=255)

                                                    gCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAg                                     >  2:1258028/1‑93 (MQ=255)

                                                    gCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAg                                     <  1:2483657/93‑1 (MQ=255)

                                                     cccTATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGc                                    <  2:3184320/93‑1 (MQ=255)

                                                      ccGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCg                                   >  1:6089415/1‑93 (MQ=255)

                                                       cGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCgg                                  <  2:2435780/93‑1 (MQ=255)

                                                       cGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCgg                                  <  2:2518467/93‑1 (MQ=255)

                                                       cGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCgg                                  <  2:3635252/93‑1 (MQ=255)

                                                        gATAGACGCTGATGTTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggg                                 <  2:6322266/93‑1 (MQ=255)

                                                        gATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggg                                 >  1:2110434/1‑93 (MQ=255)

                                                         aTAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCgggg                                <  1:3065737/93‑1 (MQ=255)

                                                          tAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggggg                               <  2:2616369/93‑1 (MQ=255)

                                                          tAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAACCggggg                               >  1:7890175/1‑93 (MQ=255)

                                                           aGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGa                              <  1:5723244/93‑1 (MQ=255)

                                                           aGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGa                              <  1:7476252/93‑1 (MQ=255)

                                                            gACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAg                             <  1:1964162/93‑1 (MQ=255)

                                                             aCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGt                            <  1:7084415/93‑1 (MQ=255)

                                                             aCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGt                            <  1:4220017/93‑1 (MQ=255)

                                                             aCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGt                            <  1:8165400/93‑1 (MQ=255)

                                                              cGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTc                           <  1:1020644/93‑1 (MQ=255)

                                                                cTGATGGTTTCTGCCGGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGc                         <  1:3567683/93‑1 (MQ=255)

                                                                cTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGc                         >  2:1560286/1‑93 (MQ=255)

                                                                cTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGc                         >  1:888806/1‑93 (MQ=255)

                                                                  gATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTg                       <  1:4749325/93‑1 (MQ=255)

                                                                    tGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGACGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGt                     <  2:5705884/93‑1 (MQ=255)

                                                                    tGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGt                     <  1:6410612/93‑1 (MQ=255)

                                                                      gTTTCTGCGCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTa                   <  2:2179905/93‑1 (MQ=255)

                                                                      gTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGGGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGACGCTGGTTa                   >  2:5621197/1‑93 (MQ=255)

                                                                       tttCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTaa                  >  2:4712231/1‑93 (MQ=255)

                                                                       tttCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGGTaa                  >  1:2272897/1‑93 (MQ=255)

                                                                          cTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACg               <  1:927376/93‑1 (MQ=255)

                                                                           tGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGt              >  2:4666952/1‑93 (MQ=255)

                                                                            gCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGtt             <  1:491745/93‑1 (MQ=255)

                                                                            gCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTAAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGtt             <  1:6985298/93‑1 (MQ=255)

                                                                              ccGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGtttt           >  1:1264360/1‑93 (MQ=255)

                                                                                gATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTa         >  1:6571924/1‑93 (MQ=255)

                                                                                 agggATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAAAAACCCCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTAc        <  2:592230/91‑1 (MQ=255)

                                                                                  tGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACg       >  1:2865227/1‑93 (MQ=255)

                                                                                   ggATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACTTTTTTACGt      <  1:8072778/93‑1 (MQ=255)

                                                                                   ggATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGt      <  2:4057171/93‑1 (MQ=255)

                                                                                   ggATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGt      <  1:8719840/93‑1 (MQ=255)

                                                                                    gaaaaGTTTGATAGGGTGTAGAATAAAGAGGAAAAAAAACAGAAAACCCCCCCGCGAAAAGGGGGGGAGTCGCTGGTTAAACGTTTTTACGtt     <  2:1876658/90‑1 (MQ=255)

                                                                                     aTAAGCTTGATAGCGTGTTGAAGGAAGCGGTGAAATAACAGAAACCCCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTc    <  2:8076629/93‑1 (MQ=255)

                                                                                       aaGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGa  <  1:459935/93‑1 (MQ=255)

GCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGA  >  NC_000913/1065927‑1066106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGGT  >  NC_000913/1065925‑1066110

ATGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCT                                                                                              >  SRR4302541.1911657/1‑94 (MQ=60)

 TGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTT                                                                                             <  SRR4302541.2229324/94‑1 (MQ=60)

 TGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTT                                                                                             <  SRR4302541.5631372/94‑1 (MQ=60)

   CGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGA                                                                                           >  SRR4302541.5844036/1‑94 (MQ=60)

     TTAACCCTGCAGGCACCGTCTCAGGATGTGACGCGGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGAGAAGCTTGATA                                                                                         <  SRR4302541.4564766/94‑1 (MQ=60)

      TAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAG                                                                                        <  SRR4302541.2361263/94‑1 (MQ=60)

      TAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAG                                                                                        <  SRR4302541.6826657/94‑1 (MQ=60)

        ACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCG                                                                                      >  SRR4302541.7774730/1‑94 (MQ=60)

        ACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCG                                                                                      >  SRR4302541.4494520/1‑94 (MQ=60)

          CCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTG                                                                                    <  SRR4302541.1675034/94‑1 (MQ=60)

          CCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTG                                                                                    <  SRR4302541.3996835/94‑1 (MQ=60)

           CTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGT                                                                                   >  SRR4302541.8367884/1‑94 (MQ=60)

           CTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGT                                                                                   >  SRR4302541.6704764/1‑94 (MQ=60)

           CTGCAGGCACCCGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGT                                                                                   >  SRR4302541.3452806/1‑94 (MQ=60)

            TGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT                                                                                  <  SRR4302541.5551433/94‑1 (MQ=60)

            TGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT                                                                                  >  SRR4302541.752150/1‑94 (MQ=60)

            TGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT                                                                                  <  SRR4302541.3807753/94‑1 (MQ=60)

            TGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT                                                                                  >  SRR4302541.4721068/1‑94 (MQ=60)

            TGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT                                                                                  >  SRR4302541.1099631/1‑94 (MQ=60)

            CGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT                                                                                  <  SRR4302541.5752711/94‑1 (MQ=60)

             GCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATACGCTTGATAGCGTGTTA                                                                                 >  SRR4302541.2229515/1‑94 (MQ=60)

             GCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTG                                                                                 >  SRR4302541.5971668/1‑94 (MQ=60)

             GCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTG                                                                                 <  SRR4302541.4935303/94‑1 (MQ=60)

              CAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGA                                                                                >  SRR4302541.3747192/1‑94 (MQ=60)

              CAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGA                                                                                >  SRR4302541.1042329/1‑94 (MQ=60)

               AGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAA                                                                               <  SRR4302541.7758132/94‑1 (MQ=60)

               AGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAA                                                                               >  SRR4302541.73363/1‑94 (MQ=60)

                 GCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATG                                                                             <  SRR4302541.377013/94‑1 (MQ=60)

                  CACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGA                                                                            >  SRR4302541.7854243/1‑94 (MQ=60)

                  CACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGA                                                                            <  SRR4302541.3057042/94‑1 (MQ=60)

                  CACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTACCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGA                                                                            >  SRR4302541.5025915/1‑94 (MQ=60)

                   ACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGGTAGACGCTGATGGGTTCTGGGCGATGGATAAGGTTGATAGTGTGGTGAATGAA                                                                           >  SRR4302541.5924369/1‑94 (MQ=60)

                   ACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAA                                                                           >  SRR4302541.5587553/1‑94 (MQ=60)

                   ACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAA                                                                           >  SRR4302541.2313981/1‑94 (MQ=60)

                    CCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAG                                                                          <  SRR4302541.5276000/94‑1 (MQ=60)

                    CCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAG                                                                          <  SRR4302541.1998490/94‑1 (MQ=60)

                    CCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAG                                                                          <  SRR4302541.6005489/94‑1 (MQ=60)

                     CTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGC                                                                         <  SRR4302541.8489866/94‑1 (MQ=60)

                     CTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGC                                                                         >  SRR4302541.2135197/1‑94 (MQ=60)

                      TGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCG                                                                        <  SRR4302541.2847637/94‑1 (MQ=60)

                      TGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCG                                                                        >  SRR4302541.1860840/1‑94 (MQ=60)

                       GCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATGGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGG                                                                       >  SRR4302541.7555961/1‑94 (MQ=60)

                       GCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGG                                                                       >  SRR4302541.389932/1‑94 (MQ=60)

                       GCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGG                                                                       <  SRR4302541.2487197/94‑1 (MQ=60)

                       GCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGG                                                                       <  SRR4302541.6220930/94‑1 (MQ=60)

                         GCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTG                                                                     >  SRR4302541.5262171/1‑94 (MQ=60)

                         GCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTG                                                                     >  SRR4302541.2038996/1‑94 (MQ=60)

                         GCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTG                                                                     >  SRR4302541.3712931/1‑94 (MQ=60)

                         GCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTG                                                                     >  SRR4302541.4622298/1‑94 (MQ=60)

                         GCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTG                                                                     <  SRR4302541.5640034/94‑1 (MQ=60)

                         GCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTA                                                                     >  SRR4302541.3496237/1‑94 (MQ=60)

                          CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA                                                                    >  SRR4302541.1367582/1‑94 (MQ=60)

                          CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA                                                                    <  SRR4302541.2370745/94‑1 (MQ=60)

                          CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA                                                                    <  SRR4302541.2952564/94‑1 (MQ=60)

                           AGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAA                                                                   >  SRR4302541.715189/1‑94 (MQ=60)

                           AGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAA                                                                   >  SRR4302541.5496176/1‑94 (MQ=60)

                            GCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAA                                                                  >  SRR4302541.5053877/1‑94 (MQ=60)

                             CGTTTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAAT                                                                 <  SRR4302541.5888987/94‑1 (MQ=60)

                             CGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAAT                                                                 >  SRR4302541.8234976/1‑94 (MQ=60)

                              GTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATA                                                                >  SRR4302541.8818118/1‑94 (MQ=60)

                              GTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATA                                                                >  SRR4302541.5578795/1‑94 (MQ=60)

                              GTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATA                                                                >  SRR4302541.5578794/1‑94 (MQ=60)

                                GTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAAC                                                              <  SRR4302541.5683681/94‑1 (MQ=60)

                                GTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAAC                                                              <  SRR4302541.1663583/94‑1 (MQ=60)

                                GTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAAC                                                              <  SRR4302541.7201378/94‑1 (MQ=60)

                                  GACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAG                                                            <  SRR4302541.4443284/94‑1 (MQ=60)

                                   ACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGA                                                           >  SRR4302541.1189199/1‑94 (MQ=60)

                                   ACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGA                                                           >  SRR4302541.6285371/1‑94 (MQ=60)

                                    CGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAA                                                          >  SRR4302541.2795526/1‑94 (MQ=60)

                                       TGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAAC                                                       >  SRR4302541.4072484/1‑94 (MQ=60)

                                        GGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACT                                                      <  SRR4302541.8367574/94‑1 (MQ=60)

                                         GAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTC                                                     >  SRR4302541.3757757/1‑94 (MQ=60)

                                          AATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCC                                                    <  SRR4302541.3989589/94‑1 (MQ=60)

                                          AATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCC                                                    <  SRR4302541.5356471/94‑1 (MQ=60)

                                          AATTAAGCGCTTGCGCGATAGACGATGATGGTTTCTGCCCGCTGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACCCC                                                    <  SRR4302541.2850781/94‑1 (MQ=60)

                                           ATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCC                                                   >  SRR4302541.1272619/1‑94 (MQ=60)

                                            TTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCC                                                  <  SRR4302541.3827380/94‑1 (MQ=60)

                                            TTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCC                                                  <  SRR4302541.3173285/94‑1 (MQ=60)

                                            ATAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCC                                                  <  SRR4302541.5744051/94‑1 (MQ=60)

                                             TAAGCGGTTTCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC                                                 <  SRR4302541.6224200/94‑1 (MQ=60)

                                             TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC                                                 <  SRR4302541.1763808/94‑1 (MQ=60)

                                             TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC                                                 <  SRR4302541.6589400/94‑1 (MQ=60)

                                              AAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCG                                                <  SRR4302541.8303111/94‑1 (MQ=60)

                                              AAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCG                                                <  SRR4302541.1335035/94‑1 (MQ=60)

                                              AAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCG                                                <  SRR4302541.7126278/94‑1 (MQ=60)

                                                GCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCG                                              <  SRR4302541.2970569/94‑1 (MQ=60)

                                                 CGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGA                                             <  SRR4302541.7071403/94‑1 (MQ=60)

                                                 CGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGA                                             <  SRR4302541.7092394/94‑1 (MQ=60)

                                                  GGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAG                                            >  SRR4302541.6622994/1‑94 (MQ=60)

                                                  GGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAG                                            >  SRR4302541.5527579/1‑94 (MQ=60)

                                                  GGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAG                                            <  SRR4302541.7819984/94‑1 (MQ=60)

                                                    TTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAA                                          <  SRR4302541.5694836/94‑1 (MQ=60)

                                                    GTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAA                                          <  SRR4302541.2008542/94‑1 (MQ=60)

                                                     TGCCCGATAGCCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAG                                         <  SRR4302541.3369812/94‑1 (MQ=60)

                                                     TGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAG                                         <  SRR4302541.5444699/94‑1 (MQ=60)

                                                      gcagGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGC                                        <  SRR4302541.1988875/90‑1 (MQ=60)

                                                      GCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAATTCCCCCGCGAGAAGG                                        >  SRR4302541.3852843/1‑94 (MQ=60)

                                                      GCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGC                                        <  SRR4302541.2508613/94‑1 (MQ=60)

                                                       GCCGATAGACTCTTATGGTTTCTGCCCGATGGATAATCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCG                                       <  SRR4302541.7272446/94‑1 (MQ=60)

                                                       CCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCG                                       >  SRR4302541.6151573/1‑94 (MQ=60)

                                                       CCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGGGTTGAATGAATGGGTGAACTAACAGAAAAATCCCCCGAGAGAGGCG                                       >  SRR4302541.7153520/1‑94 (MQ=60)

                                                        CCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGG                                      <  SRR4302541.5112438/94‑1 (MQ=60)

                                                        CCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCCCGAGAAGCGG                                      >  SRR4302541.2901635/1‑94 (MQ=60)

                                                         CGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGCAGCGGG                                     >  SRR4302541.59340/1‑94 (MQ=60)

                                                         CGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGG                                     <  SRR4302541.899815/94‑1 (MQ=60)

                                                         CGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGG                                     >  SRR4302541.6854633/1‑94 (MQ=60)

                                                         CGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGG                                     >  SRR4302541.2130879/1‑94 (MQ=60)

                                                          GATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGG                                    <  SRR4302541.6706424/94‑1 (MQ=60)

                                                           ATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGG                                   <  SRR4302541.3096821/94‑1 (MQ=60)

                                                           ATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAACCGGGGG                                   >  SRR4302541.7976927/1‑94 (MQ=60)

                                                            TAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGA                                  >  SRR4302541.3704442/1‑94 (MQ=60)

                                                            TAGACGCTGATGGTTTCCGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGA                                  <  SRR4302541.7740026/94‑1 (MQ=60)

                                                             AGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAG                                 <  SRR4302541.7556227/94‑1 (MQ=60)

                                                             AGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAG                                 <  SRR4302541.5781588/94‑1 (MQ=60)

                                                             AGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAG                                 <  SRR4302541.822779/94‑1 (MQ=60)

                                                              GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT                                <  SRR4302541.2860340/94‑1 (MQ=60)

                                                              GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT                                <  SRR4302541.1983102/94‑1 (MQ=60)

                                                               ACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTC                               <  SRR4302541.4262015/94‑1 (MQ=60)

                                                               ACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTC                               <  SRR4302541.8254585/94‑1 (MQ=60)

                                                               ACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTC                               <  SRR4302541.7159769/94‑1 (MQ=60)

                                                                CGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCG                              <  SRR4302541.2126967/94‑1 (MQ=60)

                                                                CGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCG                              <  SRR4302541.1030077/94‑1 (MQ=60)

                                                                CGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCG                              <  SRR4302541.8076749/94‑1 (MQ=60)

                                                                 GCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGC                             >  SRR4302541.896956/1‑94 (MQ=60)

                                                                 GCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGC                             >  SRR4302541.896957/1‑94 (MQ=60)

                                                                  CTGATGGTTTCTGCCGGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCT                            <  SRR4302541.3603814/94‑1 (MQ=60)

                                                                  CTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCT                            <  SRR4302541.5482618/94‑1 (MQ=60)

                                                                  CTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCT                            <  SRR4302541.4301451/94‑1 (MQ=60)

                                                                  CTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGCCGCT                            >  SRR4302541.618049/1‑94 (MQ=60)

                                                                   TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG                           >  SRR4302541.3239025/1‑94 (MQ=60)

                                                                   TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG                           >  SRR4302541.645478/1‑94 (MQ=60)

                                                                   TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG                           >  SRR4302541.7166955/1‑94 (MQ=60)

                                                                   TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG                           >  SRR4302541.7166954/1‑94 (MQ=60)

                                                                   TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG                           >  SRR4302541.1953446/1‑94 (MQ=60)

                                                                   TGATGGTTTCTGCCCGATGGATAAGCTGGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG                           <  SRR4302541.5465547/94‑1 (MQ=60)

                                                                    GATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGG                          <  SRR4302541.4797848/94‑1 (MQ=60)

                                                                    GATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGG                          >  SRR4302541.8860495/1‑94 (MQ=60)

                                                                     ATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGT                         <  SRR4302541.5792722/94‑1 (MQ=60)

                                                                     ATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGT                         >  SRR4302541.7926859/1‑94 (MQ=60)

                                                                     ATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGT                         >  SRR4302541.7750815/1‑94 (MQ=60)

                                                                      TGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTT                        <  SRR4302541.6475994/94‑1 (MQ=60)

                                                                        GTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGGTAA                      >  SRR4302541.2294873/1‑94 (MQ=60)

                                                                        GTTTCTGCCCGATGGATAAGCTTGATAGAGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTGCCTGGTTAA                      >  SRR4302541.7302309/1‑94 (MQ=60)

                                                                          TTCTGCCGGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAAAAACCCCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAAC                    <  SRR4302541.4799438/94‑1 (MQ=60)

                                                                          TTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAAC                    >  SRR4302541.8048297/1‑94 (MQ=60)

                                                                          TTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAAC                    <  SRR4302541.6072249/94‑1 (MQ=60)

                                                                          TTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAAC                    <  SRR4302541.6072250/94‑1 (MQ=60)

                                                                           TCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACG                   >  SRR4302541.8744451/1‑94 (MQ=60)

                                                                            CTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGT                  <  SRR4302541.936107/94‑1 (MQ=60)

                                                                            CTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGT                  >  SRR4302541.2494011/1‑94 (MQ=60)

                                                                              GCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTT                <  SRR4302541.496393/94‑1 (MQ=60)

                                                                              GCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTAAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTT                <  SRR4302541.7059695/94‑1 (MQ=60)

                                                                               CCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTT               >  SRR4302541.1276931/1‑94 (MQ=60)

                                                                                CCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTT              >  SRR4302541.7150410/1‑94 (MQ=60)

                                                                                CCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTT              <  SRR4302541.1244638/94‑1 (MQ=60)

                                                                                CCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTT              <  SRR4302541.2751444/94‑1 (MQ=60)

                                                                                CAGATGGATAAGCTTGATAGCGGGTTGAATGAAGCGGTTACATAACAGAAAACTCCCCCGCGAGCAGCGGGGGAGTCGCTGGTTAAACGTTTTT              <  SRR4302541.2504134/94‑1 (MQ=60)

                                                                                 CGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTA             >  SRR4302541.6639164/1‑94 (MQ=60)

                                                                                  GATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTAC            <  SRR4302541.2921597/94‑1 (MQ=60)

                                                                                   ATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACG           >  SRR4302541.2894018/1‑94 (MQ=60)

                                                                                     GGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACTTTTTTACGTT         <  SRR4302541.8161393/94‑1 (MQ=60)

                                                                                     GGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTT         <  SRR4302541.6904264/94‑1 (MQ=60)

                                                                                     GGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTT         >  SRR4302541.1697691/1‑94 (MQ=60)

                                                                                     GGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTT         <  SRR4302541.8813093/94‑1 (MQ=60)

                                                                                      GATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTC        >  SRR4302541.793526/1‑94 (MQ=60)

                                                                                       ATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCG       <  SRR4302541.8552941/94‑1 (MQ=60)

                                                                                       ATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCG       <  SRR4302541.4300653/94‑1 (MQ=60)

                                                                                         AAGTTTGATAGCTTTTTGAATGAACCGGTGAAATAACAGAAAACCCCCCGGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGAT     <  SRR4302541.4716046/94‑1 (MQ=60)

                                                                                         AAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGAT     <  SRR4302541.464311/94‑1 (MQ=60)

                                                                                         AAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGAT     >  SRR4302541.8496176/1‑94 (MQ=60)

                                                                                         AAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGAT     <  SRR4302541.5765430/94‑1 (MQ=60)

                                                                                          AGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATG    <  SRR4302541.3091415/94‑1 (MQ=60)

                                                                                          AGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATG    <  SRR4302541.2304162/94‑1 (MQ=60)

                                                                                           GCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGG   <  SRR4302541.454446/94‑1 (MQ=60)

                                                                                            CTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGGT  >  SRR4302541.6004364/1‑94 (MQ=60)

ATGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGGT  >  NC_000913/1065925‑1066110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`