Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,066,017 |
T→C |
F404L (TTT→CTT) |
agp → |
periplasmic glucose‑1‑phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,066,017 | 0 | T | C | 100.0%
| 718.1
/ NA
| 202 | F404L (TTT→CTT) | agp | periplasmic glucose‑1‑phosphatase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (91/111); total (91/111) |
Only 100 of 211 total aligned reads displayed.
GCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCG > NC_000913/1065927‑1066105
|
cGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTg < 2:6062743/93‑1 (MQ=255)
gTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGa > 2:4287453/1‑93 (MQ=255)
ttAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGAt > 2:1310837/1‑93 (MQ=255)
ttAACCCTGCAGGCACCTGCACAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGAt < 2:2752474/93‑1 (MQ=255)
tAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATa < 1:5907629/93‑1 (MQ=255)
aaCCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAg > 1:4751096/1‑93 (MQ=255)
aaCCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAg > 2:2483786/1‑93 (MQ=255)
aaCCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAg > 1:5864401/1‑93 (MQ=255)
aCCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGc < 2:1527843/93‑1 (MQ=255)
aCCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGc < 2:6256461/93‑1 (MQ=255)
ccTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCgt < 2:2616667/93‑1 (MQ=255)
tGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCgtgt > 2:4352293/1‑93 (MQ=255)
gCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGtt < 1:4394991/93‑1 (MQ=255)
gCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGtt < 2:3117811/93‑1 (MQ=255)
cAGGCACCTGCGCAGCGTGTGACGCTTGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtg < 2:2032610/93‑1 (MQ=255)
gCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaat > 1:4076300/1‑93 (MQ=255)
gCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaat > 2:6462344/1‑93 (MQ=255)
cACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaatg < 1:678283/93‑1 (MQ=255)
aCCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTtgaatga > 1:1474738/1‑93 (MQ=255)
cTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAg < 2:3818086/93‑1 (MQ=255)
cTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGGTTCTGCCCCATGGGTAAGCTTGATAGCGTGTttaatgaaa > 1:4682408/1‑92 (MQ=255)
tGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGc < 1:5002394/93‑1 (MQ=255)
tGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGc < 2:5556846/93‑1 (MQ=255)
cgcAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCgg > 1:2350545/1‑93 (MQ=255)
gcAGCGTGTGACGCTGGAATTAAGCTGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCgct < 2:6245545/93‑3 (MQ=255)
aGCGTGTGGCGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGa < 1:4902317/93‑1 (MQ=255)
aGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGa > 1:1728119/1‑93 (MQ=255)
aGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGa > 2:228362/1‑93 (MQ=255)
aGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGa < 2:5035443/93‑1 (MQ=255)
gCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGaa > 1:1771724/1‑93 (MQ=255)
gCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGaa > 2:5420924/1‑93 (MQ=255)
tgtgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATa > 1:5391385/1‑93 (MQ=255)
tgtgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATa > 2:3339342/1‑93 (MQ=255)
gtgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATaa > 2:917647/1‑93 (MQ=255)
tgACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAAc < 1:1315280/93‑1 (MQ=255)
gACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATaaaa < 1:6178776/93‑3 (MQ=255)
gACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACa < 2:5756450/93‑1 (MQ=255)
gACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACa > 2:4586156/1‑93 (MQ=255)
gACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACa > 2:2999487/1‑93 (MQ=255)
gACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACa < 1:62385/93‑1 (MQ=255)
ggAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAATCGGTGAAATATCAGAAAAc < 1:6277342/93‑1 (MQ=255)
ggAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAAc < 1:2626895/93‑1 (MQ=255)
ggAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAAc > 2:3494197/1‑93 (MQ=255)
gAATTAAGCGGGTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACt < 2:2190719/93‑1 (MQ=255)
aaTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTc > 2:5685322/1‑93 (MQ=255)
aTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcc > 1:1940668/1‑93 (MQ=255)
aTTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcc < 1:5541344/93‑1 (MQ=255)
ttAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTccc < 1:6332328/93‑1 (MQ=255)
tAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcccc < 1:1050280/93‑1 (MQ=255)
tAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcccc < 2:3731409/93‑1 (MQ=255)
tAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTcccc < 1:4252625/93‑1 (MQ=255)
aaGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTccccc < 1:3628060/93‑1 (MQ=255)
gCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCcgc < 2:2931979/93‑1 (MQ=255)
gCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCcgc < 2:169395/93‑1 (MQ=255)
gTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCgag > 1:3701073/1‑93 (MQ=255)
tGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGaa > 2:2803036/1‑93 (MQ=255)
cccGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGc < 2:302861/93‑1 (MQ=255)
gATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggg < 2:5212332/93‑1 (MQ=255)
gATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggg < 1:1449132/93‑1 (MQ=255)
aTAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCgggg > 2:2657340/1‑93 (MQ=255)
tAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggggg < 1:3831022/93‑1 (MQ=255)
tAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCggggg > 1:3914727/1‑93 (MQ=255)
aGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGa > 2:1809204/1‑93 (MQ=255)
aGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGa > 1:3184904/1‑93 (MQ=255)
gACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAg < 2:2173291/93‑1 (MQ=255)
gACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAg > 1:5175279/1‑93 (MQ=255)
gACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAg > 1:1630635/1‑93 (MQ=255)
gACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAg < 1:3279373/93‑1 (MQ=255)
aCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGt < 1:4444619/93‑1 (MQ=255)
aCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGt > 1:873463/1‑93 (MQ=255)
aCGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCCCGAGGAGCgggggggg > 1:45921/1‑90 (MQ=255)
cGCTGATGTTTTCTGCCGGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTAAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTc < 1:4027959/93‑1 (MQ=255)
cGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTc > 2:80018/1‑93 (MQ=255)
gCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCg > 1:116607/1‑93 (MQ=255)
gCTGATGGTTTCTACCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCg < 2:6357188/93‑1 (MQ=255)
tGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCt > 1:3420790/1‑93 (MQ=255)
tGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGGCGCt > 1:2700190/1‑93 (MQ=255)
gATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTg > 2:4132470/1‑93 (MQ=255)
gATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTg > 1:3034896/1‑93 (MQ=255)
aTGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTgg > 1:4174544/1‑93 (MQ=255)
tGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGt < 1:3212540/93‑1 (MQ=255)
ggTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGtt < 1:3963980/93‑1 (MQ=255)
tCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGCAATAACAGAAAACTTCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAAc > 2:1919276/1‑93 (MQ=255)
tCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGGTaaag > 1:2056921/1‑92 (MQ=255)
cTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACg < 1:510372/93‑1 (MQ=255)
tGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGt < 2:4307382/93‑1 (MQ=255)
cccGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGttt < 1:6220797/93‑1 (MQ=255)
ccGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGtttt > 1:5295841/1‑93 (MQ=255)
cGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGttttt > 2:5955508/1‑93 (MQ=255)
gATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTa < 1:5339898/93‑1 (MQ=255)
aTGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTAc < 2:5640435/93‑1 (MQ=255)
aTGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTAc < 1:3747030/93‑1 (MQ=255)
ggATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGt < 2:31555/93‑1 (MQ=255)
gATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCACCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGtt < 2:392235/93‑1 (MQ=255)
gATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGtt > 1:5639731/1‑93 (MQ=255)
gATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGtt > 2:2094186/1‑93 (MQ=255)
aTAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTc > 1:5125000/1‑93 (MQ=255)
aTAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTc > 2:5894689/1‑93 (MQ=255)
tAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCg > 2:4748456/1‑93 (MQ=255)
aaaGCTTGATAGTGTGTTGAATGAGGCGAAAAAAAAACAAAAACCCCCCCCGGGAGAGGGGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCg < 2:1169834/92‑1 (MQ=255)
|
GCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCG > NC_000913/1065927‑1066105
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGGT > NC_000913/1065924‑1066110
|
cagGCGTTACCCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGC < SRR4302534.137470/91‑1 (MQ=60)
ATGCGTTACCCCTGCAGGCACCTGCCCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCCATGGATAAGCT < SRR4302534.4035406/94‑1 (MQ=60)
TGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTT < SRR4302534.5321778/94‑1 (MQ=60)
GTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGAT > SRR4302534.3117215/1‑94 (MQ=60)
TTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATA > SRR4302534.2552310/1‑94 (MQ=60)
TAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAG > SRR4302534.6023633/1‑94 (MQ=60)
TAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAG > SRR4302534.4880069/1‑94 (MQ=60)
TAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAG < SRR4302534.6068044/94‑1 (MQ=60)
AACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGC > SRR4302534.5994533/1‑94 (MQ=60)
ACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCG > SRR4302534.5491728/1‑94 (MQ=60)
ggcagccgCCTGCGCAGCGTGTGACGCTGGAATGAAGCGGTTGGCCTATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTT < SRR4302534.2972577/86‑1 (MQ=60)
GCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTG < SRR4302534.4513530/94‑1 (MQ=60)
AGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAA > SRR4302534.4542749/1‑94 (MQ=60)
AGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAA < SRR4302534.3939386/94‑1 (MQ=60)
GGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAAT > SRR4302534.4185697/1‑94 (MQ=60)
CACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGA > SRR4302534.1513533/1‑94 (MQ=60)
CACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGA < SRR4302534.694835/94‑1 (MQ=60)
CCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGGTTCTGCCCCATGGGTAAGCTTGATAGCGTGTTTAATGAAA > SRR4302534.4809532/1‑94 (MQ=60)
TGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCG < SRR4302534.1249971/94‑1 (MQ=60)
TGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCG < SRR4302534.5137632/94‑1 (MQ=60)
GCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGG < SRR4302534.2195505/94‑1 (MQ=60)
GCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGG > SRR4302534.2412927/1‑94 (MQ=60)
CGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGT < SRR4302534.5464725/94‑1 (MQ=60)
CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA > SRR4302534.85760/1‑94 (MQ=60)
CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA > SRR4302534.1772989/1‑94 (MQ=60)
CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA > SRR4302534.3746832/1‑94 (MQ=60)
CAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGA > SRR4302534.5300869/1‑94 (MQ=60)
AGCGTGTGGCGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAA < SRR4302534.5035225/94‑1 (MQ=60)
AGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAA > SRR4302534.1817721/1‑94 (MQ=60)
CGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAAT < SRR4302534.3551688/94‑1 (MQ=60)
GTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATA > SRR4302534.5536567/1‑94 (MQ=60)
TGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAA < SRR4302534.3897491/94‑1 (MQ=60)
TGACGCTGTAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACA < SRR4302534.3289355/94‑1 (MQ=60)
TGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACA > SRR4302534.1611552/1‑94 (MQ=60)
TGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACA < SRR4302534.1349956/94‑1 (MQ=60)
GACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAG < SRR4302534.4067743/94‑1 (MQ=60)
GACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAG < SRR4302534.64089/94‑1 (MQ=60)
GACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAAAAG < SRR4302534.6346918/94‑1 (MQ=60)
GACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTGCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAG > SRR4302534.5387422/1‑94 (MQ=60)
ACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCTTGTTGAATGAAGCGGTGAAATAACAGA < SRR4302534.4903755/94‑1 (MQ=60)
CGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAA < SRR4302534.1366944/94‑1 (MQ=60)
TGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAAC > SRR4302534.5259816/1‑94 (MQ=60)
GGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAATCGGTGAAATATCAGAAAACT < SRR4302534.6447251/94‑1 (MQ=60)
GGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACT < SRR4302534.5705697/94‑1 (MQ=60)
GGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACT < SRR4302534.2696391/94‑1 (MQ=60)
GGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACT < SRR4302534.2352111/94‑1 (MQ=60)
GAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTC > SRR4302534.5682616/1‑94 (MQ=60)
GAATTAAGCGCTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGACAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTC < SRR4302534.4102198/94‑1 (MQ=60)
AATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCC > SRR4302534.1991420/1‑94 (MQ=60)
ATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCC < SRR4302534.5690926/94‑1 (MQ=60)
TTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCC < SRR4302534.2944174/94‑1 (MQ=60)
TTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCC < SRR4302534.6503405/94‑1 (MQ=60)
TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCC < SRR4302534.6393527/94‑1 (MQ=60)
TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC < SRR4302534.6056148/94‑1 (MQ=60)
TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC > SRR4302534.6151765/1‑94 (MQ=60)
TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC < SRR4302534.4367363/94‑1 (MQ=60)
TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC < SRR4302534.1077478/94‑1 (MQ=60)
TAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCC < SRR4302534.1776697/94‑1 (MQ=60)
AAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCG > SRR4302534.4274816/1‑94 (MQ=60)
AAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCG < SRR4302534.3725589/94‑1 (MQ=60)
AAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCG < SRR4302534.3813589/94‑1 (MQ=60)
CGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGA > SRR4302534.4720255/1‑94 (MQ=60)
GGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAG < SRR4302534.3485173/94‑1 (MQ=60)
GGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAG > SRR4302534.3800561/1‑94 (MQ=60)
GCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGC < SRR4302534.2713162/94‑1 (MQ=60)
CGATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGG < SRR4302534.4445388/94‑1 (MQ=60)
GATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGG < SRR4302534.1487269/94‑1 (MQ=60)
GATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGG < SRR4302534.435062/94‑1 (MQ=60)
ATAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGG > SRR4302534.4019682/1‑94 (MQ=60)
TAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGA < SRR4302534.3933914/94‑1 (MQ=60)
TAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGA > SRR4302534.3269127/1‑94 (MQ=60)
TAGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGA < SRR4302534.687809/94‑1 (MQ=60)
AGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAG > SRR4302534.5314739/1‑94 (MQ=60)
AGACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAG > SRR4302534.1673149/1‑94 (MQ=60)
GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT > SRR4302534.895545/1‑94 (MQ=60)
GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT < SRR4302534.6354195/94‑1 (MQ=60)
GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT < SRR4302534.3366777/94‑1 (MQ=60)
GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT < SRR4302534.2023702/94‑1 (MQ=60)
GACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCCCGAGGAGCGGGGGggg > SRR4302534.47146/1‑91 (MQ=60)
ACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTC < SRR4302534.4564706/94‑1 (MQ=60)
ACGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTC < SRR4302534.374730/94‑1 (MQ=60)
CGCTGATGTTTTCTGCCGGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTAAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCG < SRR4302534.4135959/94‑1 (MQ=60)
CGCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCG > SRR4302534.119708/1‑94 (MQ=60)
GCTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGC > SRR4302534.1493192/1‑94 (MQ=60)
GCTGATGGCTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGCGAAGCGGGGGAGTCGC > SRR4302534.3322416/1‑94 (MQ=60)
CTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCT > SRR4302534.3512696/1‑94 (MQ=60)
CTGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGGCGCT > SRR4302534.2771519/1‑94 (MQ=60)
TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGGGTCGCTG > SRR4302534.4611378/1‑94 (MQ=60)
TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG > SRR4302534.3114477/1‑94 (MQ=60)
TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG > SRR4302534.1680569/1‑94 (MQ=60)
TGATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTG < SRR4302534.6356516/94‑1 (MQ=60)
GATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGG > SRR4302534.4287309/1‑94 (MQ=60)
ATGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGT < SRR4302534.6440161/94‑1 (MQ=60)
TGGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTT < SRR4302534.3297785/94‑1 (MQ=60)
GGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTA < SRR4302534.4070106/94‑1 (MQ=60)
GGTTTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTA < SRR4302534.4149019/94‑1 (MQ=60)
TTCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGGTAAAG > SRR4302534.2110654/1‑94 (MQ=60)
TCTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACG < SRR4302534.1124532/94‑1 (MQ=60)
CTGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGT < SRR4302534.523085/94‑1 (MQ=60)
TGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTT < SRR4302534.4836449/94‑1 (MQ=60)
TGCCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTT > SRR4302534.4468806/1‑94 (MQ=60)
CCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTT > SRR4302534.5438771/1‑94 (MQ=60)
CCCGATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTT < SRR4302534.6389756/94‑1 (MQ=60)
CCGATGGATAAGCTTGATAGCGTGTGGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTT < SRR4302534.5241066/94‑1 (MQ=60)
GATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTAC < SRR4302534.5483867/94‑1 (MQ=60)
ATGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACG < SRR4302534.3847686/94‑1 (MQ=60)
TGGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGT > SRR4302534.512684/1‑94 (MQ=60)
GGATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTT > SRR4302534.5792373/1‑94 (MQ=60)
GATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTC > SRR4302534.5263382/1‑94 (MQ=60)
GATAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTC > SRR4302534.5263383/1‑94 (MQ=60)
ATAAGCTTGTTAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCG > SRR4302534.6474505/1‑94 (MQ=60)
ATAAGCTTGATAGCGAGTTGAATGAAGCGGTGAAATAACAGAAAACTACCCCGCacgaaacggggggggcgctggataaatgctttttggttat > SRR4302534.4741476/1‑54 (MQ=54)
TAAGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGA < SRR4302534.1861784/94‑1 (MQ=60)
AGCTTGATAGTGTTTTGAATGAAGCGGTGAAATAACAGAAACCTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATG < SRR4302534.2627706/94‑1 (MQ=60)
AGCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATG > SRR4302534.6073782/1‑94 (MQ=60)
GCTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGG < SRR4302534.938220/94‑1 (MQ=60)
GTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGGT > SRR4302534.6631061/1‑94 (MQ=60)
CTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGGTTTTACGTTCGATGGC > SRR4302534.451949/1‑94 (MQ=60)
|
GATGCGTTAACCCTGCAGGCACCTGCGCAGCGTGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCTGATGGTTTCTGCCCGATGGATAAGTTTGATAGCGTGTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGAGAAGCGGGGGAGTCGCTGGTTAAACGTTTTTACGTTCGATGGT > NC_000913/1065924‑1066110
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
