Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,503,894 |
T→C |
T71A (ACC→GCC) |
b1433 ← |
putative membrane transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,503,894 | 0 | T | C | 100.0%
| 1013.7
/ NA
| 293 | T71A (ACC→GCC) | b1433 | putative membrane transport protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/162); total (131/162) |
Only 100 of 303 total aligned reads displayed.
TGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGTGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGT > NC_000913/1503804‑1503982
|
tGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCga < 2:6430770/93‑1 (MQ=255)
tGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCga < 2:2183135/93‑1 (MQ=255)
tGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCga < 2:1436480/93‑1 (MQ=255)
gTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCgaga > 2:4325808/1‑93 (MQ=255)
cAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAg < 2:3225733/93‑1 (MQ=255)
cAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAg < 1:8731987/93‑1 (MQ=255)
aaTAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAgg < 1:4468003/93‑1 (MQ=255)
aaTAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAgg > 1:4039834/1‑93 (MQ=255)
aaTAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAgg < 1:3267539/93‑1 (MQ=255)
aTAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAgga > 1:2693958/1‑92 (MQ=255)
aTAAAAACGACGATGGGTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGt < 1:6920777/93‑1 (MQ=255)
tAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTa < 1:973554/93‑1 (MQ=255)
aaaaaCGCCGATGGCTTCGTTAAGTGATAGTCCCTGCAATCCGGTGTCCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTAc < 1:1623376/93‑1 (MQ=255)
aaaaCGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGCTAcg > 1:5350709/1‑93 (MQ=255)
aCGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGa > 2:3176062/1‑93 (MQ=255)
gCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATa > 1:7627520/1‑93 (MQ=255)
ccGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAc > 2:8154895/1‑93 (MQ=255)
ccGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAc < 2:2023560/93‑1 (MQ=255)
cGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAcc < 2:8392258/93‑1 (MQ=255)
cGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAcc > 1:2392650/1‑93 (MQ=255)
cGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAcc > 1:8685231/1‑93 (MQ=255)
cGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAca < 1:2079528/93‑2 (MQ=255)
gATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCa > 2:938928/1‑93 (MQ=255)
tGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATa < 2:6274359/93‑1 (MQ=255)
ggCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATaa > 1:4768231/1‑93 (MQ=255)
ggCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATaa < 2:2430149/93‑1 (MQ=255)
cTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATg > 1:3789882/1‑93 (MQ=255)
ttCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGt > 1:6445743/1‑93 (MQ=255)
ttCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGt < 1:561106/93‑1 (MQ=255)
ttCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGt > 2:5558851/1‑93 (MQ=255)
tCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTc > 1:5787954/1‑93 (MQ=255)
cGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCa > 2:420014/1‑93 (MQ=255)
gTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCag > 1:8351889/1‑93 (MQ=255)
ttAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCaga < 2:3466026/93‑1 (MQ=255)
ttAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCaga < 2:5019758/93‑1 (MQ=255)
ttAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGACGCGCCAGGCGTTGACAATGCGGCGAGAACAGGTACGCGATACTATAATGTCaga > 2:7206112/1‑93 (MQ=255)
tAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCagag < 2:114705/93‑1 (MQ=255)
aGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTc < 1:3102922/93‑1 (MQ=255)
gtgtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTcg > 2:2266170/1‑92 (MQ=255)
gtgtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCa < 1:4185443/93‑1 (MQ=255)
gtgtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCa > 2:7042289/1‑93 (MQ=255)
tgtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAg < 1:287095/93‑1 (MQ=255)
gtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGc < 1:1847681/93‑1 (MQ=255)
gtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGc < 1:3671987/93‑1 (MQ=255)
gtTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGc < 1:7051331/93‑1 (MQ=255)
ttAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCg > 1:8162975/1‑93 (MQ=255)
tCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACt < 1:1806595/93‑1 (MQ=255)
cccTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTg > 1:4995778/1‑93 (MQ=255)
cccTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTg > 2:3032563/1‑93 (MQ=255)
cccTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTg < 1:6051350/93‑1 (MQ=255)
ccTGCAATCCGGTGACCAACAAAGCCGCGCCATGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGa > 2:6565673/1‑93 (MQ=255)
ccTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGa > 2:1880341/1‑93 (MQ=255)
cTGCACTCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGAc < 2:4799667/93‑1 (MQ=255)
cTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGAc > 2:8630772/1‑93 (MQ=255)
tGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCTGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACg > 1:6612209/1‑93 (MQ=255)
tGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACg > 1:7845381/1‑93 (MQ=255)
tGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACg > 2:8728233/1‑93 (MQ=255)
tGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACg > 1:1075715/1‑93 (MQ=255)
gCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGc > 1:1903389/1‑93 (MQ=255)
aTCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCa > 2:4492960/1‑93 (MQ=255)
ccGGTGTCCAACAAAGCCGCGCCAGGTGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGTCCttt > 2:7801083/1‑93 (MQ=255)
ccGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCAtt < 2:4021013/93‑1 (MQ=255)
cGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTg < 1:7460054/93‑1 (MQ=255)
ggTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGc > 1:4207607/1‑93 (MQ=255)
gTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGcc < 2:1632254/93‑1 (MQ=255)
ggACCAAAAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCa < 2:3726527/92‑1 (MQ=255)
aacaaAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGCTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGcccc > 2:278277/1‑93 (MQ=255)
aacaaAGCCGCGCCAGGCGTTGACCATGCGGCGACAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGcccc < 2:6767899/93‑1 (MQ=255)
caaAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAg < 2:3605165/93‑1 (MQ=255)
aGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAgcgc < 2:5415450/93‑1 (MQ=255)
gCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGcc < 2:2055491/93‑1 (MQ=255)
ccGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCg > 1:2744263/1‑93 (MQ=255)
ccGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCg > 1:254913/1‑93 (MQ=255)
ccGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCg > 1:8043618/1‑93 (MQ=255)
cgcgCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGt < 2:267018/93‑1 (MQ=255)
cgcgCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGt < 2:5241050/93‑1 (MQ=255)
cgcgCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCCATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGt < 2:2914647/93‑1 (MQ=255)
gcgcCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTc > 1:7565141/1‑93 (MQ=255)
gcgcCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTc < 1:6237863/93‑1 (MQ=255)
cgcCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCa < 1:7897115/93‑1 (MQ=255)
cgcCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCa > 2:8532072/1‑93 (MQ=255)
cgcCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCa > 2:1358055/1‑93 (MQ=255)
ccAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATc < 1:8226469/93‑1 (MQ=255)
ccAGGAGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATc > 2:5869857/1‑93 (MQ=255)
cAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATcc < 1:994092/93‑1 (MQ=255)
cAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATcc < 2:3870274/93‑1 (MQ=255)
ggCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTTCCAGCCCCAGCGCCGTCATccag > 2:4752515/1‑93 (MQ=255)
ggCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATccag < 2:7404621/93‑1 (MQ=255)
gCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATccagc < 2:4679911/93‑1 (MQ=255)
cGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATccagcc < 2:6056832/93‑1 (MQ=255)
cGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATccagcc < 2:3329952/93‑1 (MQ=255)
cGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATacagcc > 2:7351442/1‑93 (MQ=255)
gTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGAGGCCCGTTGCCAGCCCCAGCCCCGTCATccagcca > 1:7340226/1‑93 (MQ=255)
gTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATccagcca < 2:7903866/93‑1 (MQ=255)
gACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCagag > 2:1272277/1‑93 (MQ=255)
ccATGCGGCGAGAACAGGTACGAGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCAGTCATCCAGCCAGAGAt < 2:5345100/93‑1 (MQ=255)
cATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGAtt < 2:7742069/93‑1 (MQ=255)
aTGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGAttt < 2:2528140/93‑1 (MQ=255)
aTGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCACCGCCGACATCCAGCCAGAGAttt > 2:4626429/1‑93 (MQ=255)
tGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTtg > 2:5251574/1‑93 (MQ=255)
|
TGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGTGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGT > NC_000913/1503804‑1503982
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTTGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGTGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCAGT > NC_000913/1503801‑1503987
|
CGTTGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGC > SRR4302541.1204683/1‑94 (MQ=60)
CGTTGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGC > SRR4302541.2289438/1‑94 (MQ=60)
GTTGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCG < SRR4302541.13417/94‑1 (MQ=60)
GGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGA < SRR4302541.7750921/94‑1 (MQ=60)
GGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGA < SRR4302541.5572502/94‑1 (MQ=60)
GACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCACCAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACA > SRR4302541.3141918/1‑94 (MQ=60)
CAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGG > SRR4302541.4079727/1‑94 (MQ=60)
CAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGG < SRR4302541.8825474/94‑1 (MQ=60)
CAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGG < SRR4302541.5400957/94‑1 (MQ=60)
CAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGG < SRR4302541.2255648/94‑1 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGT < SRR4302541.571532/94‑1 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGT < SRR4302541.7582582/94‑1 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGT < SRR4302541.3300506/94‑1 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGT < SRR4302541.4513010/94‑1 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGT > SRR4302541.8792728/1‑94 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGT > SRR4302541.8792724/1‑94 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGA > SRR4302541.5523358/1‑94 (MQ=60)
AATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGA > SRR4302541.2720720/1‑94 (MQ=60)
ATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTA < SRR4302541.6994636/94‑1 (MQ=60)
ATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTA > SRR4302541.6260389/1‑94 (MQ=60)
ATAAAAACGACGATGGGTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTA < SRR4302541.6994633/94‑1 (MQ=60)
TAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTAC < SRR4302541.7984761/94‑1 (MQ=60)
TAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTAC < SRR4302541.982690/94‑1 (MQ=60)
AAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACG < SRR4302541.7446686/94‑1 (MQ=60)
AAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGCTACG > SRR4302541.5405698/1‑94 (MQ=60)
AAAAACGCCGATGGCTTCGTTAAGTGATAGTCCCTGCAATCCGGTGTCCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACG < SRR4302541.1639472/94‑1 (MQ=60)
AAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCG < SRR4302541.205383/94‑1 (MQ=60)
ACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCTAGGCGTTGACCATGCGGCGAGAACAGGTACGCGAT > SRR4302541.1864172/1‑94 (MQ=60)
ACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGAT < SRR4302541.1762106/94‑1 (MQ=60)
CGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATA < SRR4302541.8226911/94‑1 (MQ=60)
CGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATA > SRR4302541.7708924/1‑94 (MQ=60)
GCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATAC > SRR4302541.6320244/1‑94 (MQ=60)
CCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACC > SRR4302541.1483749/1‑94 (MQ=60)
CCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACC > SRR4302541.8778168/1‑94 (MQ=60)
CCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACC > SRR4302541.2416070/1‑94 (MQ=60)
CGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCA < SRR4302541.8689387/94‑1 (MQ=60)
CGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACAA < SRR4302541.2099651/94‑1 (MQ=60)
GATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCAT > SRR4302541.1977626/1‑94 (MQ=60)
GATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCAT > SRR4302541.2178379/1‑94 (MQ=60)
ATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATA > SRR4302541.8257442/1‑94 (MQ=60)
TGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAA > SRR4302541.4816923/1‑94 (MQ=60)
GGCTTCCTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAAT < SRR4302541.2805439/94‑1 (MQ=60)
GCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATG < SRR4302541.8622120/94‑1 (MQ=60)
GCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATG > SRR4302541.3827980/1‑94 (MQ=60)
GCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATG > SRR4302541.2547702/1‑94 (MQ=60)
CTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGT > SRR4302541.6511435/1‑94 (MQ=60)
TTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTC < SRR4302541.566382/94‑1 (MQ=60)
TTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTC > SRR4302541.5846771/1‑94 (MQ=60)
CGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAG > SRR4302541.8442524/1‑94 (MQ=60)
CGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAG < SRR4302541.7187619/94‑1 (MQ=60)
CGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAG > SRR4302541.7716981/1‑94 (MQ=60)
CGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAG < SRR4302541.5202971/94‑1 (MQ=60)
TTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAG > SRR4302541.4716557/1‑94 (MQ=60)
TTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAG < SRR4302541.4460310/94‑1 (MQ=60)
TTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAG < SRR4302541.6937004/94‑1 (MQ=60)
TAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGT > SRR4302541.3115053/1‑94 (MQ=60)
AAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTC < SRR4302541.7748566/94‑1 (MQ=60)
AAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTC < SRR4302541.2602763/94‑1 (MQ=60)
AGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCA < SRR4302541.6102552/94‑1 (MQ=60)
AGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCA < SRR4302541.6174956/94‑1 (MQ=60)
AGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCA < SRR4302541.3134360/94‑1 (MQ=60)
GTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAG < SRR4302541.4226970/94‑1 (MQ=60)
GTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAG > SRR4302541.1186634/1‑94 (MQ=60)
TGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGC < SRR4302541.289555/94‑1 (MQ=60)
TGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGC > SRR4302541.1894283/1‑94 (MQ=60)
GTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCG < SRR4302541.3709214/94‑1 (MQ=60)
GTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCG > SRR4302541.8252147/1‑94 (MQ=60)
GTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCG < SRR4302541.1865555/94‑1 (MQ=60)
GTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCG < SRR4302541.7126322/94‑1 (MQ=60)
GTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCG < SRR4302541.3646744/94‑1 (MQ=60)
AGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTAC < SRR4302541.8271790/94‑1 (MQ=60)
AGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTAC < SRR4302541.3287254/94‑1 (MQ=60)
AGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTAC < SRR4302541.7636592/94‑1 (MQ=60)
GTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACT > SRR4302541.6432677/1‑94 (MQ=60)
GTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACT < SRR4302541.7401317/94‑1 (MQ=60)
TCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTG < SRR4302541.6517529/94‑1 (MQ=60)
TCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTG < SRR4302541.99652/94‑1 (MQ=60)
TCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTG > SRR4302541.5047092/1‑94 (MQ=60)
TCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTG < SRR4302541.1824141/94‑1 (MQ=60)
TCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGGTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTG < SRR4302541.7649044/94‑1 (MQ=60)
GCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTG < SRR4302541.7649046/94‑1 (MQ=60)
CCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGA < SRR4302541.6113219/94‑1 (MQ=60)
CCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGA < SRR4302541.375676/94‑1 (MQ=60)
CCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGA < SRR4302541.6570464/94‑1 (MQ=60)
CTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCTGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACG > SRR4302541.6679976/1‑94 (MQ=60)
CTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGGAGAGGTACGCGATACGATAATGTCAGAGTCAGAGTAATGACG > SRR4302541.7931356/1‑94 (MQ=60)
CTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACG > SRR4302541.1085742/1‑94 (MQ=60)
CTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACG > SRR4302541.7931355/1‑94 (MQ=60)
TGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGC > SRR4302541.1921669/1‑94 (MQ=60)
ATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCAT > SRR4302541.5835814/1‑94 (MQ=60)
TCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATT < SRR4302541.4205703/94‑1 (MQ=60)
CGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGC > SRR4302541.4249449/1‑94 (MQ=60)
CGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGC < SRR4302541.7539748/94‑1 (MQ=60)
CGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGC > SRR4302541.994259/1‑94 (MQ=60)
GGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCC > SRR4302541.7974082/1‑94 (MQ=60)
TGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAG > SRR4302541.4119417/1‑94 (MQ=60)
GACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGC > SRR4302541.817650/1‑94 (MQ=60)
ACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCC < SRR4302541.1883788/94‑1 (MQ=60)
ACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCC > SRR4302541.2769684/1‑94 (MQ=60)
ACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCC > SRR4302541.2769685/1‑94 (MQ=60)
CCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCC < SRR4302541.4248868/94‑1 (MQ=60)
CCAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCC < SRR4302541.8880638/94‑1 (MQ=60)
CAACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCC > SRR4302541.4719821/1‑94 (MQ=60)
AACAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCA > SRR4302541.6708328/1‑94 (MQ=60)
CAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGC < SRR4302541.982221/94‑1 (MQ=60)
CAAAGCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGC < SRR4302541.6018431/94‑1 (MQ=60)
GCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCG > SRR4302541.4444028/1‑94 (MQ=60)
GCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCG > SRR4302541.2771819/1‑94 (MQ=60)
GCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCG > SRR4302541.8132070/1‑94 (MQ=60)
GCCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCG > SRR4302541.256980/1‑94 (MQ=60)
CCGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGT > SRR4302541.4045261/1‑94 (MQ=60)
CGCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTC > SRR4302541.7645990/1‑94 (MQ=60)
GCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCA < SRR4302541.6301605/94‑1 (MQ=60)
GCGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCA < SRR4302541.840189/94‑1 (MQ=60)
CGCCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCAT < SRR4302541.7983966/94‑1 (MQ=60)
CCAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCC < SRR4302541.8316171/94‑1 (MQ=60)
CAGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCA < SRR4302541.1003342/94‑1 (MQ=60)
AGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAG < SRR4302541.8396571/94‑1 (MQ=60)
AGGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAG > SRR4302541.2848174/1‑94 (MQ=60)
GGCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGC > SRR4302541.1860647/1‑94 (MQ=60)
GCGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCC < SRR4302541.2661913/94‑1 (MQ=60)
CGTTGACCATGCTGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCA < SRR4302541.7517190/94‑1 (MQ=60)
CGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGAGGCCCGTTGCCAGCCCCAGCCCCGTCATCCAGCCA > SRR4302541.7418618/1‑94 (MQ=60)
CGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCA < SRR4302541.4248252/94‑1 (MQ=60)
CGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCA > SRR4302541.4933893/1‑94 (MQ=60)
CGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCA > SRR4302541.6995675/1‑94 (MQ=60)
CGTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCA > SRR4302541.3365177/1‑94 (MQ=60)
GTTGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAG < SRR4302541.2563959/94‑1 (MQ=60)
TGACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAG < SRR4302541.8126150/94‑1 (MQ=60)
GACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGA < SRR4302541.373033/94‑1 (MQ=60)
GACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGA > SRR4302541.1754697/1‑94 (MQ=60)
ACCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGAT < SRR4302541.3949261/94‑1 (MQ=60)
CCATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATT > SRR4302541.4879486/1‑94 (MQ=60)
CATGCGGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTT < SRR4302541.3090887/94‑1 (MQ=60)
GGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCA < SRR4302541.3409251/94‑1 (MQ=60)
GGCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCA > SRR4302541.174024/1‑94 (MQ=60)
GCGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCAG < SRR4302541.3577322/94‑1 (MQ=60)
CGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCAGT > SRR4302541.4571256/1‑94 (MQ=60)
CGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCAGT > SRR4302541.3609506/1‑94 (MQ=60)
|
CGTTGGTGACAATAAAAACGCCGATGGCTTCGTTAAGTGTTAGTCCCTGCAATCCGGTGACCAACAAAGCCGCGCCAGGCGTTGACCATGCGGTGAGAACAGGTACGCGATACCATAATGTCAGAGTCAGCGTACTGACGCCCATTGCCAGCCCCAGCGCCGTCATCCAGCCAGAGATTTGTGCAGT > NC_000913/1503801‑1503987
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
