Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,607,710 |
A→G |
L332P (CTT→CCT) |
uxaB ← |
altronate oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,607,710 | 0 | A | G | 100.0%
| 1128.7
/ NA
| 322 | L332P (CTT→CCT) | uxaB | altronate oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (147/175); total (147/175) |
Only 100 of 327 total aligned reads displayed.
TTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAAGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTA > NC_000913/1607620‑1607799
|
ttGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGc < 1:8321305/93‑1 (MQ=255)
ttGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGc < 2:8479490/93‑1 (MQ=255)
ttGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGc > 2:371114/1‑93 (MQ=255)
aGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCaaa < 1:6303667/93‑1 (MQ=255)
aGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCaaa > 1:5173609/1‑93 (MQ=255)
cgcgATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATc < 2:4094975/93‑1 (MQ=255)
cgcgATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATc < 2:7164782/93‑1 (MQ=255)
gcgATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATcc > 1:5606451/1‑93 (MQ=255)
cgATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCa < 2:1655090/93‑1 (MQ=255)
cgATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCa > 2:5794843/1‑93 (MQ=255)
aTAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGt > 2:133324/1‑93 (MQ=255)
aGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTAc > 2:6617236/1‑93 (MQ=255)
gACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTAcc > 2:4267891/1‑93 (MQ=255)
gACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTAcc > 2:6303016/1‑93 (MQ=255)
gACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTAcc < 2:2877882/93‑1 (MQ=255)
cagcagCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCgg < 1:3590438/93‑1 (MQ=255)
gcagcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaa < 1:3881887/93‑1 (MQ=255)
gcagcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaa > 1:3498972/1‑93 (MQ=255)
gcagcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaa > 2:7097718/1‑93 (MQ=255)
gcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataa > 2:8354938/1‑93 (MQ=255)
gcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataa > 1:5008563/1‑93 (MQ=255)
gcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataa > 2:5561721/1‑93 (MQ=255)
cTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataat < 2:587197/93‑1 (MQ=255)
tGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAGTCCAGTACCGGAATAAtt < 2:357274/93‑1 (MQ=255)
tGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAtt > 1:8455341/1‑93 (MQ=255)
gATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAttt > 1:1962582/1‑93 (MQ=255)
tGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttct < 2:2018074/93‑1 (MQ=255)
tcTTAATGTACGGGTTACGTAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttctt < 2:3099208/92‑1 (MQ=255)
gCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttctt < 2:2260974/93‑1 (MQ=255)
tAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGt < 2:7559555/93‑1 (MQ=255)
aaTGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTa < 1:7912155/93‑1 (MQ=255)
aTGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAg < 2:1490595/93‑1 (MQ=255)
tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGa < 1:2584792/93‑1 (MQ=255)
tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGa > 2:1373618/1‑93 (MQ=255)
tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGa < 2:2440766/93‑1 (MQ=255)
tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGa < 1:1581103/93‑1 (MQ=255)
tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGa > 1:7662648/1‑93 (MQ=255)
gTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGAt < 1:6028676/93‑1 (MQ=255)
tACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATa < 2:3953962/93‑1 (MQ=255)
tACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATa < 1:3998107/93‑1 (MQ=255)
tACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATa > 2:1856685/1‑93 (MQ=255)
tACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATa < 1:1364118/93‑1 (MQ=255)
tACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATa > 1:2434926/1‑93 (MQ=255)
cGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGc > 1:7475625/1‑93 (MQ=255)
gggTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCt < 1:2953636/93‑1 (MQ=255)
ttACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCtttt > 1:7303143/1‑93 (MQ=255)
ttACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCtttt < 2:4800508/93‑1 (MQ=255)
aCGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTc > 1:6966800/1‑93 (MQ=255)
gggAAACGCCACGTGACTGCACTGGCGGAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAGTTCTTCGTAGATAGCTTTTTCa < 1:7236811/92‑1 (MQ=255)
ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCaa < 1:6808295/93‑1 (MQ=255)
ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCaa < 1:4277673/93‑1 (MQ=255)
gAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAc < 1:6622266/93‑1 (MQ=255)
agcGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCGCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGa < 1:5842958/91‑1 (MQ=255)
aCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGaa < 1:1749197/93‑1 (MQ=255)
aCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGaa > 1:7997991/1‑93 (MQ=255)
aCGCCCGGTGACTGCACTCGCGAAACATGCCAGTTCATCACGAGGCAAATCCAGTGCCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGaa < 1:7776853/93‑1 (MQ=255)
cGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAt < 2:8682497/93‑1 (MQ=255)
ccGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATgca > 1:2787565/1‑92 (MQ=255)
cGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATgcgc > 1:5915792/1‑93 (MQ=255)
ggTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCa > 2:7910185/1‑93 (MQ=255)
gTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCaa < 1:6084075/93‑1 (MQ=255)
tGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCaat > 1:4348359/1‑92 (MQ=255)
cTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAAttt > 1:8148251/1‑93 (MQ=255)
cTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAAttt < 2:4929683/93‑1 (MQ=255)
tGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTc > 2:5949263/1‑93 (MQ=255)
gCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCa < 2:6212688/93‑1 (MQ=255)
aCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGc < 1:2279126/93‑1 (MQ=255)
aCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGc < 1:709077/93‑1 (MQ=255)
aCTGACGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGc < 1:4467163/93‑1 (MQ=255)
cTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCa < 1:98125/93‑1 (MQ=255)
tGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAt < 1:3749636/93‑1 (MQ=255)
tGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAt < 2:2674583/93‑1 (MQ=255)
ggCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATc < 2:6816001/93‑1 (MQ=255)
ggCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATc < 2:4596148/93‑1 (MQ=255)
gCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCg > 2:5012899/1‑93 (MQ=255)
gCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCg > 2:8740013/1‑93 (MQ=255)
ggAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGt < 2:381695/92‑1 (MQ=255)
cGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGt > 2:330973/1‑93 (MQ=255)
cGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAGGCGCAAATTTCAGCATCGt < 1:4621147/93‑1 (MQ=255)
aaaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGtta > 2:7971750/1‑92 (MQ=255)
aaaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTc < 2:4196437/93‑1 (MQ=255)
aaaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTc > 2:1220049/1‑93 (MQ=255)
aaaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTc < 2:1033581/93‑1 (MQ=255)
aaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCa < 1:2130256/93‑1 (MQ=255)
aaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCa < 2:2088846/93‑1 (MQ=255)
aaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCa > 1:2658997/1‑93 (MQ=255)
aaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCa > 1:3647360/1‑93 (MQ=255)
aGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCAt > 2:5072133/1‑93 (MQ=255)
gATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATc > 1:6400008/1‑93 (MQ=255)
aTTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCg < 1:1836780/93‑1 (MQ=255)
ttCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGc > 2:4705532/1‑93 (MQ=255)
cAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTc > 2:1951784/1‑93 (MQ=255)
ttCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCAcc > 2:7449245/1‑93 (MQ=255)
tcatcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCt > 1:8695996/1‑93 (MQ=255)
catcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTa > 1:310587/1‑93 (MQ=255)
catcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTa > 2:8234802/1‑93 (MQ=255)
catcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTa < 1:1115094/93‑1 (MQ=255)
catcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAGCGTTCATCGCTTCACCTa < 1:1188515/93‑1 (MQ=255)
atcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTAc > 1:8075245/1‑93 (MQ=255)
caCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACgg < 2:3506632/93‑1 (MQ=255)
|
TTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAAGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTA > NC_000913/1607620‑1607799
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAAGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCA > NC_000913/1607617‑1607803
|
CCGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGTGAAAGATTCCAGTTCATCACGAG < SRR4302541.543878/94‑1 (MQ=60)
CCGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTAGCGAAAGATTCCAGTTCATCACGAG > SRR4302541.1608355/1‑94 (MQ=60)
CGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGG < SRR4302541.3811971/94‑1 (MQ=60)
CGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGG < SRR4302541.3811972/94‑1 (MQ=60)
CGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACCGGTTGCGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGG < SRR4302541.6007833/94‑1 (MQ=60)
GTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGC > SRR4302541.8398298/1‑94 (MQ=60)
TTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCA > SRR4302541.7607109/1‑94 (MQ=60)
TTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCA < SRR4302541.8411702/94‑1 (MQ=60)
TGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAA > SRR4302541.6502933/1‑94 (MQ=60)
TGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAA > SRR4302541.4359505/1‑94 (MQ=60)
TGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAA < SRR4302541.3950385/94‑1 (MQ=60)
TGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAA > SRR4302541.4359504/1‑94 (MQ=60)
GAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAA > SRR4302541.5226854/1‑94 (MQ=60)
AGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAAT < SRR4302541.6368104/94‑1 (MQ=60)
CGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCC > SRR4302541.5663837/1‑94 (MQ=60)
CGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCC < SRR4302541.8026799/94‑1 (MQ=60)
GCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCA < SRR4302541.7589133/94‑1 (MQ=60)
GCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCA > SRR4302541.6322615/1‑94 (MQ=60)
GCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCA < SRR4302541.7511024/94‑1 (MQ=60)
CGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGCAAGATTCCAGTTCATCAAGAGGCAACTCCAG > SRR4302541.1271595/1‑94 (MQ=60)
GATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGT < SRR4302541.3868375/94‑1 (MQ=60)
GATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGT < SRR4302541.7838367/94‑1 (MQ=60)
GATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGT < SRR4302541.5967032/94‑1 (MQ=60)
GATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGT < SRR4302541.4505430/94‑1 (MQ=60)
AGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACC > SRR4302541.8163120/1‑94 (MQ=60)
ACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGG > SRR4302541.4253490/1‑94 (MQ=60)
CAGCAGCTGATGCTTAATGTACGGGTTACGGAATCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGA < SRR4302541.8589452/94‑1 (MQ=60)
CAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGA < SRR4302541.3626843/94‑1 (MQ=60)
AGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAA > SRR4302541.3534072/1‑94 (MQ=60)
AGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAA > SRR4302541.3534070/1‑94 (MQ=60)
AGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAA > SRR4302541.1956750/1‑94 (MQ=60)
GCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAAT < SRR4302541.8285774/94‑1 (MQ=60)
GCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAAT < SRR4302541.711027/94‑1 (MQ=60)
GCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAAT < SRR4302541.3920858/94‑1 (MQ=60)
CAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATA < SRR4302541.7110631/94‑1 (MQ=60)
CAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATA > SRR4302541.3669016/1‑94 (MQ=60)
CAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATA < SRR4302541.4006465/94‑1 (MQ=60)
AGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAA > SRR4302541.6695794/1‑94 (MQ=60)
AGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAA > SRR4302541.5060045/1‑94 (MQ=60)
AGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAA > SRR4302541.6015369/1‑94 (MQ=60)
GCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAT < SRR4302541.5831797/94‑1 (MQ=60)
GCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAT < SRR4302541.244039/94‑1 (MQ=60)
CTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTTACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATT > SRR4302541.603026/1‑94 (MQ=60)
CTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATT > SRR4302541.8546583/1‑94 (MQ=60)
TGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTT > SRR4302541.1981504/1‑94 (MQ=60)
TGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTT > SRR4302541.8796554/1‑94 (MQ=60)
CTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCG > SRR4302541.1769648/1‑94 (MQ=60)
CTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCG < SRR4302541.8071065/94‑1 (MQ=60)
TTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGT > SRR4302541.509908/1‑94 (MQ=60)
TTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGT < SRR4302541.6513075/94‑1 (MQ=60)
TAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTA < SRR4302541.2195694/94‑1 (MQ=60)
TATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAG < SRR4302541.3659493/94‑1 (MQ=60)
AATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAG < SRR4302541.7999213/94‑1 (MQ=60)
ATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGA > SRR4302541.647224/1‑94 (MQ=60)
ATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGA < SRR4302541.7532242/94‑1 (MQ=60)
ATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGA > SRR4302541.7744194/1‑94 (MQ=60)
ATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGA < SRR4302541.2971928/94‑1 (MQ=60)
TGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGAT < SRR4302541.2610692/94‑1 (MQ=60)
TGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGAT < SRR4302541.1596893/94‑1 (MQ=60)
TGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGAT > SRR4302541.8545861/1‑94 (MQ=60)
TGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGAT < SRR4302541.7898885/94‑1 (MQ=60)
GTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATA > SRR4302541.2459038/1‑94 (MQ=60)
GTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATA < SRR4302541.6090436/94‑1 (MQ=60)
TACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAG < SRR4302541.4037688/94‑1 (MQ=60)
TACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAG < SRR4302541.1377564/94‑1 (MQ=60)
TACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAG < SRR4302541.732955/94‑1 (MQ=60)
TACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAG > SRR4302541.7936509/1‑94 (MQ=60)
ACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGC < SRR4302541.3277129/94‑1 (MQ=60)
ACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGC > SRR4302541.7555593/1‑94 (MQ=60)
CGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCT > SRR4302541.1756707/1‑94 (MQ=60)
GGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTT < SRR4302541.2983333/94‑1 (MQ=60)
GGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTT < SRR4302541.8218202/94‑1 (MQ=60)
GGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTT < SRR4302541.5906768/94‑1 (MQ=60)
GTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTT > SRR4302541.7381107/1‑94 (MQ=60)
GTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTT < SRR4302541.2689608/94‑1 (MQ=60)
TACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTC > SRR4302541.7041058/1‑94 (MQ=60)
TACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTC < SRR4302541.8820904/94‑1 (MQ=60)
TCGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCA < SRR4302541.2756463/94‑1 (MQ=60)
GGGAAACGCCACGTGACTGCACTGGCGGAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAGTTCTTCGTAGATAGCTTTTTCAA < SRR4302541.7314000/94‑1 (MQ=60)
CGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAA < SRR4302541.7198356/94‑1 (MQ=60)
CGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAA < SRR4302541.7198355/94‑1 (MQ=60)
CGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAA < SRR4302541.4471229/94‑1 (MQ=60)
CGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGCAGATAGCTTTTTCAA > SRR4302541.6118384/1‑94 (MQ=60)
CGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCAAGAACCGGAATAATTTCTTCGTAGATAGCTTTTTCAA > SRR4302541.1174455/1‑94 (MQ=60)
GGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAC > SRR4302541.5143022/1‑94 (MQ=60)
GGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAC < SRR4302541.6881111/94‑1 (MQ=60)
GGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAC < SRR4302541.4320404/94‑1 (MQ=60)
GGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAC < SRR4302541.3780731/94‑1 (MQ=60)
GGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAC > SRR4302541.2199575/1‑94 (MQ=60)
GAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACG < SRR4302541.6690138/94‑1 (MQ=60)
GAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACG < SRR4302541.7619344/94‑1 (MQ=60)
AGCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCGCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAA < SRR4302541.5902375/94‑1 (MQ=60)
AACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAA > SRR4302541.8086008/1‑94 (MQ=60)
ACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAT < SRR4302541.4494566/94‑1 (MQ=60)
ACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAT < SRR4302541.1766264/94‑1 (MQ=60)
ACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAT < SRR4302541.4297239/94‑1 (MQ=60)
ACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAT < SRR4302541.2071334/94‑1 (MQ=60)
ACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAT < SRR4302541.5986955/94‑1 (MQ=60)
ACGCCCGGTGACTGCACTCGCGAAACATGCCAGTTCATCACGAGGCAAATCCAGTGCCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAT < SRR4302541.7859586/94‑1 (MQ=60)
CGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATG > SRR4302541.4628260/1‑94 (MQ=60)
CGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATG < SRR4302541.116851/94‑1 (MQ=60)
GCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGC < SRR4302541.3028599/94‑1 (MQ=60)
CCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATCATTTCTTCGTAGATAGCTTTTTCCACGCATGCG > SRR4302541.2815686/1‑94 (MQ=60)
CCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCG < SRR4302541.7776029/94‑1 (MQ=60)
CCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCG < SRR4302541.3625864/94‑1 (MQ=60)
CCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCA > SRR4302541.2815687/1‑94 (MQ=60)
CCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGC > SRR4302541.5976013/1‑94 (MQ=60)
CGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCA > SRR4302541.8601038/1‑94 (MQ=60)
CGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCA < SRR4302541.2470416/94‑1 (MQ=60)
CGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCA > SRR4302541.38529/1‑94 (MQ=60)
CGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCA > SRR4302541.8174851/1‑94 (MQ=60)
GTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAT > SRR4302541.4391776/1‑94 (MQ=60)
GTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAA < SRR4302541.6146176/94‑1 (MQ=60)
GACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGCATGCGCAAATT > SRR4302541.3416504/1‑94 (MQ=60)
GACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATT < SRR4302541.1691819/94‑1 (MQ=60)
GACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATT > SRR4302541.3365535/1‑94 (MQ=60)
ACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTT > SRR4302541.8237346/1‑94 (MQ=60)
CTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTC > SRR4302541.2012768/1‑94 (MQ=60)
TGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCA < SRR4302541.6325492/94‑1 (MQ=60)
CACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGTATGCGCAAATTTCAGC < SRR4302541.4965888/94‑1 (MQ=60)
CACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGC < SRR4302541.7270554/94‑1 (MQ=60)
CACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGC > SRR4302541.1471991/1‑94 (MQ=60)
ACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCA < SRR4302541.715749/94‑1 (MQ=60)
ACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCA < SRR4302541.2301161/94‑1 (MQ=60)
ACTGACGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCA < SRR4302541.4512160/94‑1 (MQ=60)
CTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAT < SRR4302541.98968/94‑1 (MQ=60)
CTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAT < SRR4302541.2632134/94‑1 (MQ=60)
CTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAT < SRR4302541.1428698/94‑1 (MQ=60)
CTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAT > SRR4302541.4637971/1‑94 (MQ=60)
TGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATC < SRR4302541.3787364/94‑1 (MQ=60)
GGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCG < SRR4302541.2982415/94‑1 (MQ=60)
GGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCG > SRR4302541.6118169/1‑94 (MQ=60)
CGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGAAACTTTCAGCATggtc > SRR4302541.2170152/1‑90 (MQ=60)
CGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAAGGCGCAAATTTCAGCATCGTT < SRR4302541.4668125/94‑1 (MQ=60)
GAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTC < SRR4302541.5365551/94‑1 (MQ=60)
GAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTC > SRR4302541.1691047/1‑94 (MQ=60)
AAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCA > SRR4302541.2685440/1‑94 (MQ=60)
AAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCA < SRR4302541.3917554/94‑1 (MQ=60)
AAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCA > SRR4302541.3684351/1‑94 (MQ=60)
AAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCAT > SRR4302541.8542535/1‑94 (MQ=60)
AAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCAT < SRR4302541.8609865/94‑1 (MQ=60)
AAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCAT < SRR4302541.2150855/94‑1 (MQ=60)
AGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATC > SRR4302541.8139300/1‑94 (MQ=60)
AGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATC > SRR4302541.8139299/1‑94 (MQ=60)
AGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATC > SRR4302541.1820202/1‑94 (MQ=60)
AGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATC > SRR4302541.6465322/1‑94 (MQ=60)
GATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCG < SRR4302541.3685574/94‑1 (MQ=60)
ATTCCAGTTCATCACGAGGCAAATCCTGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGC > SRR4302541.2656049/1‑94 (MQ=60)
ATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGC < SRR4302541.1854588/94‑1 (MQ=60)
TTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCT < SRR4302541.7374385/94‑1 (MQ=60)
TTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCT < SRR4302541.4887354/94‑1 (MQ=60)
TTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATGTCCTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCT < SRR4302541.642060/94‑1 (MQ=60)
TCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTT < SRR4302541.1942810/94‑1 (MQ=60)
TCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTT > SRR4302541.3105401/1‑94 (MQ=60)
TCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTT > SRR4302541.6380982/1‑94 (MQ=60)
CCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTC > SRR4302541.5708754/1‑94 (MQ=60)
AGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCAC > SRR4302541.2597333/1‑94 (MQ=60)
AGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCAC > SRR4302541.5092117/1‑94 (MQ=60)
TTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCT > SRR4302541.8789072/1‑94 (MQ=60)
TTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCT < SRR4302541.6984099/94‑1 (MQ=60)
TTCATCACGAGGCAAATCCAGTACCGGAATAATATCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCT < SRR4302541.6855932/94‑1 (MQ=60)
TCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTA > SRR4302541.313346/1‑94 (MQ=60)
CATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTAC < SRR4302541.1200017/94‑1 (MQ=60)
CATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTAC < SRR4302541.1125571/94‑1 (MQ=60)
CATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTAC > SRR4302541.8163867/1‑94 (MQ=60)
CATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAGCGTTCATCGCTTCACCTAC < SRR4302541.1200016/94‑1 (MQ=60)
ATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACG < SRR4302541.2392714/94‑1 (MQ=60)
ATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACG < SRR4302541.693023/94‑1 (MQ=60)
CACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGT < SRR4302541.5259692/94‑1 (MQ=60)
CGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTAT > SRR4302541.2030558/1‑94 (MQ=60)
GAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGTGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGCATC > SRR4302541.2112750/1‑94 (MQ=60)
GAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATC > SRR4302541.2844403/1‑94 (MQ=60)
AGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCC < SRR4302541.207900/94‑1 (MQ=60)
GGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCA < SRR4302541.8083620/94‑1 (MQ=60)
GGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCA < SRR4302541.25363/94‑1 (MQ=60)
GGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCA > SRR4302541.1325950/1‑94 (MQ=60)
GGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCA < SRR4302541.416224/94‑1 (MQ=60)
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CCGTTGAGCGCGATAGACAGCAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAAGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCA > NC_000913/1607617‑1607803
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
