Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,722,918	T→A	N247Y (AAC→TAC)	b1647 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,722,918	0	T	A	100.0%	817.0 / NA	232	N247Y (AAC→TAC)	b1647	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (128/104); total (128/104)

Only 100 of 245 total aligned reads displayed.

TTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA  >  NC_000913/1722828‑1723007

 ttCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCCGGGGTAAac                                                                                        >  1:2359579/1‑93 (MQ=255)

       ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg                                                                                  >  1:5945166/1‑93 (MQ=255)

       ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg                                                                                  >  1:7782496/1‑93 (MQ=255)

       ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg                                                                                  >  2:2019345/1‑93 (MQ=255)

        tCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGt                                                                                 <  1:8138031/93‑1 (MQ=255)

        tCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGt                                                                                 <  2:1717633/93‑1 (MQ=255)

         cGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGtt                                                                                <  2:5557005/93‑1 (MQ=255)

           aCAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGCTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCa                                                                              >  2:2234269/1‑93 (MQ=255)

            cAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCaa                                                                             <  2:3943924/93‑1 (MQ=255)

             aGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGTTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAAt                                                                            >  2:6495755/1‑93 (MQ=255)

               cTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCg                                                                          <  1:8730153/93‑1 (MQ=255)

                tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGa                                                                         <  2:8191255/93‑1 (MQ=255)

                tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGa                                                                         >  1:4810206/1‑93 (MQ=255)

                 gCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGGGATGGTAACCGGAATACCCAGGCGGAAACCACCAGTTCAATCgtt                                                                        >  1:6649036/1‑91 (MQ=255)

                  cccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGc                                                                       <  1:2102905/93‑1 (MQ=255)

                   ccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGcc                                                                      <  1:7098637/93‑1 (MQ=255)

                    cGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGccc                                                                     >  2:7357261/1‑93 (MQ=255)

                    cGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGccc                                                                     <  1:5035555/93‑1 (MQ=255)

                      tACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATAGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcgc                                                                   >  1:6184695/1‑93 (MQ=255)

                      gaCGCGCTCAATTCTACCTGAACGGATAAATGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAACCCACCTGTTCAATCGAGCCcgc                                                                   <  2:6886860/92‑1 (MQ=255)

                       aCGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcgcg                                                                  >  1:2629275/1‑93 (MQ=255)

                       aCGCGCCCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTATACGTAATACCCAGGCGTAAACCATCTGGTCAATCGAGCCcgcg                                                                  >  2:7830100/1‑93 (MQ=255)

                          cgcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACACAGGCGTAAACCACCTGTTCAATCGAGCCCGCGttt                                                               >  2:856625/1‑93 (MQ=255)

                           gcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGCGCCCGCGTTTa                                                              >  1:2054024/1‑93 (MQ=255)

                           gcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTa                                                              <  2:811516/93‑1 (MQ=255)

                            cTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACGCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTaa                                                             <  1:386796/93‑1 (MQ=255)

                            cTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTaa                                                             >  1:3379357/1‑93 (MQ=255)

                            cTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTaa                                                             >  1:2555276/1‑93 (MQ=255)

                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            >  1:8436009/1‑93 (MQ=255)

                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            >  2:4811747/1‑93 (MQ=255)

                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            >  2:4268416/1‑93 (MQ=255)

                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            >  1:2263657/1‑93 (MQ=255)

                                  tttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcctc                                                       <  2:5432325/93‑1 (MQ=255)

                                  tttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcctc                                                       <  1:298958/93‑1 (MQ=255)

                                    tACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTg                                                     <  2:6449949/93‑1 (MQ=255)

                                     aCCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGc                                                    <  2:5541528/93‑1 (MQ=255)

                                      ccTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGcc                                                   >  1:3210179/1‑93 (MQ=255)

                                       cTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGcca                                                  >  1:5816299/1‑93 (MQ=255)

                                         gAACCGATAATTGGCAGCGGCTGCGATGGTACACGTAATACCCAGGCGTAAAACCCATGTTCAATCGAGACCGCGTTTAACTCCTCTGccacc                                                >  1:3295367/1‑93 (MQ=255)

                                          aaCCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGccacca                                               <  1:2380091/93‑1 (MQ=255)

                                           aCCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCcaccac                                              <  2:4708630/93‑1 (MQ=255)

                                            ccGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACcaca                                             <  2:6115576/93‑1 (MQ=255)

                                             cGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAg                                            <  1:3041585/93‑1 (MQ=255)

                                              gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCCCAGc                                           >  1:2815834/1‑93 (MQ=255)

                                              gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc                                           >  1:5180593/1‑93 (MQ=255)

                                              gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc                                           >  1:1121814/1‑93 (MQ=255)

                                              gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc                                           >  2:8024425/1‑93 (MQ=255)

                                                 aaTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAGTCCTCTGCCACCACAGCCAg                                        >  2:5778666/1‑93 (MQ=255)

                                                  aTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGt                                       >  1:1850438/1‑93 (MQ=255)

                                                  aTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGt                                       >  1:1647290/1‑93 (MQ=255)

                                                  aTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGt                                       >  2:5404410/1‑93 (MQ=255)

                                                   ttGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGtt                                      <  2:1138393/93‑1 (MQ=255)

                                                   ttGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGtt                                      <  1:1496996/93‑1 (MQ=255)

                                                     ggCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtca                                    <  1:5307845/93‑1 (MQ=255)

                                                        agaggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca                                 <  2:3247645/90‑1 (MQ=255)

                                                        aGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca                                 <  1:825630/93‑1 (MQ=255)

                                                        aGCGGATGAGATGGTAAACGTAATTCCCAGGCGTAAACCGCCTGTTCAATCGAGCCGGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca                                 <  1:8313724/93‑1 (MQ=255)

                                                         gCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAc                                >  1:506029/1‑93 (MQ=255)

                                                          cGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACg                               <  2:33467/93‑1 (MQ=255)

                                                           ggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGc                              <  2:29972/93‑1 (MQ=255)

                                                           ggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGc                              >  1:7501185/1‑93 (MQ=255)

                                                           ggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGc                              <  1:7367599/93‑1 (MQ=255)

                                                            gCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa                             >  1:3704250/1‑93 (MQ=255)

                                                              tGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGc                           <  1:5596210/93‑1 (MQ=255)

                                                               gCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCg                          >  2:161259/1‑93 (MQ=255)

                                                               gCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCg                          >  1:6496445/1‑93 (MQ=255)

                                                                 gATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGc                        >  1:6758100/1‑93 (MQ=255)

                                                                  aTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCt                       >  1:6251759/1‑93 (MQ=255)

                                                                  aTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCt                       >  1:7000592/1‑93 (MQ=255)

                                                                  aTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCt                       >  1:6299357/1‑93 (MQ=255)

                                                                    ggTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTgg                     >  2:28487/1‑93 (MQ=255)

                                                                     gTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGa                    >  2:6267029/1‑93 (MQ=255)

                                                                      tAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGaa                   <  2:6958078/93‑1 (MQ=255)

                                                                        aaCGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaat                 >  2:665229/1‑93 (MQ=255)

                                                                         aCGTAATACCCAGGCGTAAACCGCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGTGGCTGGAaata                <  1:8231645/93‑1 (MQ=255)

                                                                           gTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCCCCACAGCCAGTTCATCACGCAGCGGCTGGAaataat              <  1:2700192/93‑1 (MQ=255)

                                                                           gTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataat              <  2:7456556/93‑1 (MQ=255)

                                                                            tAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataata             >  1:8440697/1‑92 (MQ=255)

                                                                            tAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatc             >  2:7896896/1‑93 (MQ=255)

                                                                            tAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatc             <  2:369304/93‑1 (MQ=255)

                                                                             aaTACCCAGGCGTAACCCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatca            <  2:2926280/93‑1 (MQ=255)

                                                                              aTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcat           >  1:1080555/1‑93 (MQ=255)

                                                                              aTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcat           >  2:3605950/1‑93 (MQ=255)

                                                                              aTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcat           >  1:1028873/1‑93 (MQ=255)

                                                                               tccccAGGCGTAAACAGCCTGTTCAATCGAGCCCGCTTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcatc          <  2:8761077/91‑1 (MQ=255)

                                                                               tACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcatc          >  1:7193966/1‑93 (MQ=255)

                                                                               tACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcatc          >  1:4245186/1‑93 (MQ=255)

                                                                                 cccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATcatcat        >  1:2769709/1‑93 (MQ=255)

                                                                                 cccAGGCGTAAACCACCAGTTCAATCGGGCACGCGTTTAGCGCATCTGCCTCCCCAGCCAGTTCATCACGCAGCGGCTGGAAATAATcatcat        <  2:4270461/93‑1 (MQ=255)

                                                                                  ccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAtt       <  2:8823861/93‑1 (MQ=255)

                                                                                  ccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAtt       <  2:4478136/93‑1 (MQ=255)

                                                                                   cAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTa      <  1:7065092/93‑1 (MQ=255)

                                                                                    aGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa     >  2:764571/1‑93 (MQ=255)

                                                                                    aGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa     >  2:3539408/1‑93 (MQ=255)

                                                                                     ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa    >  2:6011816/1‑93 (MQ=255)

                                                                                     ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa    >  1:8046117/1‑93 (MQ=255)

                                                                                       cGTAAACCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACa  <  1:2500500/93‑1 (MQ=255)

                                                                                       cGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACa  <  1:1266941/93‑1 (MQ=255)

                                                                                       cGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACa  <  2:5027709/93‑1 (MQ=255)

                                                                                       cGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACa  <  2:5146477/93‑1 (MQ=255)

TTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA  >  NC_000913/1722828‑1723007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  >  NC_000913/1722825‑1723011

GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTA                                                                                               >  SRR4302541.2613235/1‑94 (MQ=60)

GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTA                                                                                               >  SRR4302541.1876102/1‑94 (MQ=60)

GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTA                                                                                               >  SRR4302541.819119/1‑94 (MQ=60)

GTGTTTCTGCTCCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTA                                                                                               <  SRR4302541.1319873/94‑1 (MQ=60)

 TGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAA                                                                                              >  SRR4302541.6617874/1‑94 (MQ=60)

     TCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCA                                                                                          >  SRR4302541.4926769/1‑94 (MQ=60)

      CTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCAC                                                                                         <  SRR4302541.972292/94‑1 (MQ=60)

      CTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCAC                                                                                         >  SRR4302541.8359593/1‑94 (MQ=60)

        GCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCT                                                                                       <  SRR4302541.2417241/94‑1 (MQ=60)

         CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTG                                                                                      <  SRR4302541.7995359/94‑1 (MQ=60)

         CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTG                                                                                      >  SRR4302541.7865303/1‑94 (MQ=60)

         CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTG                                                                                      >  SRR4302541.6005740/1‑94 (MQ=60)

           TCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTT                                                                                    <  SRR4302541.8227084/94‑1 (MQ=60)

           TCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTT                                                                                    <  SRR4302541.5108027/94‑1 (MQ=60)

            CGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTC                                                                                   >  SRR4302541.3051967/1‑94 (MQ=60)

            CGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTC                                                                                   >  SRR4302541.6214530/1‑94 (MQ=60)

             GACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCA                                                                                  >  SRR4302541.8530643/1‑94 (MQ=60)

             GACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCA                                                                                  >  SRR4302541.7117560/1‑94 (MQ=60)

              ACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAA                                                                                 <  SRR4302541.1817675/94‑1 (MQ=60)

                AGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATC                                                                               >  SRR4302541.6752289/1‑94 (MQ=60)

                AGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATC                                                                               >  SRR4302541.6699675/1‑94 (MQ=60)

                AGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATC                                                                               >  SRR4302541.1164721/1‑94 (MQ=60)

                AGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATC                                                                               >  SRR4302541.2802113/1‑94 (MQ=60)

                AGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATC                                                                               >  SRR4302541.8071485/1‑94 (MQ=60)

                  CTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGA                                                                             <  SRR4302541.8823626/94‑1 (MQ=60)

                  CTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGA                                                                             >  SRR4302541.1083151/1‑94 (MQ=60)

                  CTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGA                                                                             >  SRR4302541.4859257/1‑94 (MQ=60)

                   TGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGGGATGGTAACCGGAATACCCAGGCGGAAACCACCAGTTCAATCGtt                                                                            >  SRR4302541.6717238/1‑92 (MQ=60)

                    GCCCGTACTCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGC                                                                           <  SRR4302541.2653135/94‑1 (MQ=60)

                     CCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCC                                                                          <  SRR4302541.2123290/94‑1 (MQ=60)

                      CCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCC                                                                         <  SRR4302541.2065358/94‑1 (MQ=60)

                      CCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCC                                                                         <  SRR4302541.7174168/94‑1 (MQ=60)

                      CCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCC                                                                         <  SRR4302541.7243031/94‑1 (MQ=60)

                       CGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCG                                                                        >  SRR4302541.5342538/1‑94 (MQ=60)

                       CGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCG                                                                        <  SRR4302541.5087359/94‑1 (MQ=60)

                        GTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGC                                                                       >  SRR4302541.3334904/1‑94 (MQ=60)

                        GTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATAGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGC                                                                       >  SRR4302541.6247884/1‑94 (MQ=60)

                        CTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGC                                                                       <  SRR4302541.323765/94‑1 (MQ=60)

                         TACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCG                                                                      >  SRR4302541.3892663/1‑94 (MQ=60)

                         TACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCG                                                                      >  SRR4302541.3912852/1‑94 (MQ=60)

                         TACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCG                                                                      >  SRR4302541.2655505/1‑94 (MQ=60)

                          ACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGT                                                                     <  SRR4302541.2571543/94‑1 (MQ=60)

                           CGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTT                                                                    >  SRR4302541.6334389/1‑94 (MQ=60)

                             CGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGCGCCCGCGTTTA                                                                  >  SRR4302541.2073852/1‑94 (MQ=60)

                              GCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAA                                                                 >  SRR4302541.3413043/1‑94 (MQ=60)

                              GCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAA                                                                 >  SRR4302541.2580894/1‑94 (MQ=60)

                               CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACGCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                <  SRR4302541.390365/94‑1 (MQ=60)

                               CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                <  SRR4302541.203972/94‑1 (MQ=60)

                               CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                >  SRR4302541.2285519/1‑94 (MQ=60)

                               CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                >  SRR4302541.2367928/1‑94 (MQ=60)

                               CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                >  SRR4302541.8527139/1‑94 (MQ=60)

                                TCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACT                                                               >  SRR4302541.6256078/1‑94 (MQ=60)

                                  AATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGGAATACCCAGGCGTAAACCACCGGTTAAATCGATCCCGCGTTTAACTCT                                                             >  SRR4302541.2406737/1‑94 (MQ=60)

                                   ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCT                                                            <  SRR4302541.7152146/94‑1 (MQ=60)

                                   ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCT                                                            >  SRR4302541.300798/1‑94 (MQ=60)

                                     TTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCT                                                          <  SRR4302541.301574/94‑1 (MQ=60)

                                      TTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTG                                                         >  SRR4302541.5202068/1‑94 (MQ=60)

                                        ACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCC                                                       >  SRR4302541.3242609/1‑94 (MQ=60)

                                        ACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCC                                                       <  SRR4302541.8521066/94‑1 (MQ=60)

                                         CCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCA                                                      >  SRR4302541.5875400/1‑94 (MQ=60)

                                           TGAACCGATAATTGGCAGCGGCTGCGATGGTACACGTAATACCCAGGCGTAAAACCCATGTTCAATCGAGACCGCGTTTAACTCCTCTGCCACC                                                    >  SRR4302541.3328519/1‑94 (MQ=60)

                                           TGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACC                                                    >  SRR4302541.682297/1‑94 (MQ=60)

                                            GAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCA                                                   >  SRR4302541.8208318/1‑94 (MQ=60)

                                             AACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCAC                                                  <  SRR4302541.2403349/94‑1 (MQ=60)

                                             AACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCAC                                                  <  SRR4302541.7327569/94‑1 (MQ=60)

                                                CGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCCCAGC                                               >  SRR4302541.2844274/1‑94 (MQ=60)

                                                CGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGC                                               >  SRR4302541.5233891/1‑94 (MQ=60)

                                                CGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGC                                               >  SRR4302541.1132372/1‑94 (MQ=60)

                                                CGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGC                                               <  SRR4302541.3072323/94‑1 (MQ=60)

                                                    AATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGT                                           >  SRR4302541.1663567/1‑94 (MQ=60)

                                                    AATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGT                                           >  SRR4302541.1868328/1‑94 (MQ=60)

                                                      TTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTC                                         <  SRR4302541.3014762/94‑1 (MQ=60)

                                                      TTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTC                                         <  SRR4302541.1511787/94‑1 (MQ=60)

                                                        GGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCcgccttcgccgcccccccccccccgcccagctct                                       >  SRR4302541.6758856/1‑60 (MQ=60)

                                                        GGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCAT                                       <  SRR4302541.5362478/94‑1 (MQ=60)

                                                         GCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATC                                      <  SRR4302541.128055/94‑1 (MQ=60)

                                                          CAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCA                                     <  SRR4302541.4377693/94‑1 (MQ=60)

                                                          CAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCA                                     <  SRR4302541.6645643/94‑1 (MQ=60)

                                                          CAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCA                                     >  SRR4302541.2080378/1‑94 (MQ=60)

                                                           AGCGGCTGCGATGGTAAACGTAATACCGAGGCGTTAACCGCCTGCTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    <  SRR4302541.7114555/94‑1 (MQ=60)

                                                           AGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    >  SRR4302541.510775/1‑94 (MQ=60)

                                                           AGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    <  SRR4302541.833143/94‑1 (MQ=60)

                                                           AGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    >  SRR4302541.7180848/1‑94 (MQ=60)

                                                           AGCGGCTGCGATGGTAAACGTAATACCAAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    <  SRR4302541.2659631/94‑1 (MQ=60)

                                                           AGCGGATGAGATGGTAAACGTAATTCCCAGGCGTAAACCGCCTGTTCAATCGAGCCGGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    <  SRR4302541.8404081/94‑1 (MQ=60)

                                                            GCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACG                                   <  SRR4302541.5050102/94‑1 (MQ=60)

                                                             CGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGC                                  >  SRR4302541.7581371/1‑94 (MQ=60)

                                                              GGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA                                 >  SRR4302541.5679969/1‑94 (MQ=60)

                                                              GGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA                                 >  SRR4302541.3741660/1‑94 (MQ=60)

                                                              GGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA                                 <  SRR4302541.7446343/94‑1 (MQ=60)

                                                               GCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAG                                <  SRR4302541.2384198/94‑1 (MQ=60)

                                                                GTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGC                               <  SRR4302541.7478664/94‑1 (MQ=60)

                                                                CTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGC                               <  SRR4302541.7478665/94‑1 (MQ=60)

                                                                 TGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCG                              <  SRR4302541.5653488/94‑1 (MQ=60)

                                                                 TGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCG                              >  SRR4302541.6562676/1‑94 (MQ=60)

                                                                   GGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            <  SRR4302541.2771647/94‑1 (MQ=60)

                                                                   CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            >  SRR4302541.6830376/1‑94 (MQ=60)

                                                                   CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            >  SRR4302541.8313926/1‑94 (MQ=60)

                                                                   CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            <  SRR4302541.1515060/94‑1 (MQ=60)

                                                                   CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            <  SRR4302541.2124161/94‑1 (MQ=60)

                                                                   CGATGGGAAACGTAATCCCCAGGCGTAAACCACCTTTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            <  SRR4302541.1515059/94‑1 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           >  SRR4302541.6363743/1‑94 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           >  SRR4302541.6361621/1‑94 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           >  SRR4302541.6315624/1‑94 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           >  SRR4302541.7075095/1‑94 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           >  SRR4302541.6100647/1‑94 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           >  SRR4302541.6842919/1‑94 (MQ=60)

                                                                    GATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGCCT                           >  SRR4302541.8255168/1‑94 (MQ=60)

                                                                        GTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAA                       <  SRR4302541.4146021/94‑1 (MQ=60)

                                                                         TAAACGTAATACCCACGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCAAAGCCAGTTCATCccccaccgcccggaaa                      >  SRR4302541.2608120/1‑78 (MQ=60)

                                                                          AAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAAT                     <  SRR4302541.5620737/94‑1 (MQ=60)

                                                                          AAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAAT                     <  SRR4302541.3702706/94‑1 (MQ=60)

                                                                            ACGTAATACCCAGGCGTAAACCGCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGTGGCTGGAAATAA                   <  SRR4302541.8321381/94‑1 (MQ=60)

                                                                            ACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAA                   <  SRR4302541.1163101/94‑1 (MQ=60)

                                                                            ACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAA                   >  SRR4302541.2195706/1‑94 (MQ=60)

                                                                            ACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAA                   <  SRR4302541.7859713/94‑1 (MQ=60)

                                                                             CGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAT                  >  SRR4302541.3270421/1‑94 (MQ=60)

                                                                              GTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCCCCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATC                 <  SRR4302541.2727009/94‑1 (MQ=60)

                                                                              GTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATA                 >  SRR4302541.8531861/1‑94 (MQ=60)

                                                                              GTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACACAGCGGCTCGAAATAATC                 >  SRR4302541.8343283/1‑94 (MQ=60)

                                                                               TAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCA                >  SRR4302541.8583748/1‑94 (MQ=60)

                                                                                AATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCAT               >  SRR4302541.1090632/1‑94 (MQ=60)

                                                                                AATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCAT               >  SRR4302541.1038374/1‑94 (MQ=60)

                                                                                 ATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC              >  SRR4302541.7270707/1‑94 (MQ=60)

                                                                                 ATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC              >  SRR4302541.4287572/1‑94 (MQ=60)

                                                                                  TACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCA             <  SRR4302541.8496017/94‑1 (MQ=60)

                                                                                   ACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAT            >  SRR4302541.2797598/1‑94 (MQ=60)

                                                                                   ACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAT            <  SRR4302541.5802573/94‑1 (MQ=60)

                                                                                   ACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGGTCATCACGCAGCGCCTGGAAATACTCATCAT            >  SRR4302541.2797597/1‑94 (MQ=60)

                                                                                    CCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATT           >  SRR4302541.3184805/1‑94 (MQ=60)

                                                                                    CCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATT           >  SRR4302541.8603044/1‑94 (MQ=60)

                                                                                     CCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA          >  SRR4302541.1117285/1‑94 (MQ=60)

                                                                                     CCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA          >  SRR4302541.3611664/1‑94 (MQ=60)

                                                                                      CAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAA         <  SRR4302541.7140233/94‑1 (MQ=60)

                                                                                       AGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAA        >  SRR4302541.8134595/1‑94 (MQ=60)

                                                                                        GGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAC       <  SRR4302541.5977/94‑1 (MQ=60)

                                                                                         GCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA      <  SRR4302541.5225304/94‑1 (MQ=60)

                                                                                         GCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTCCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA      <  SRR4302541.6414821/94‑1 (MQ=60)

                                                                                          CGTAAACCCCCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAG     <  SRR4302541.2525730/94‑1 (MQ=60)

                                                                                          CGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAG     >  SRR4302541.2580334/1‑94 (MQ=60)

                                                                                          CGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAG     <  SRR4302541.1279544/94‑1 (MQ=60)

                                                                                          CGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAG     >  SRR4302541.5837934/1‑94 (MQ=60)

                                                                                            TAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC   <  SRR4302541.124419/94‑1 (MQ=60)

                                                                                            TAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC   >  SRR4302541.6588181/1‑94 (MQ=60)

                                                                                            TAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC   <  SRR4302541.2347547/94‑1 (MQ=60)

                                                                                             AAACCACCTGTTCAATCGAGCCCGCGTTTACCTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  <  SRR4302541.1070650/94‑1 (MQ=60)

                                                                                             AAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGCAATAATCATCATTAAAAAGACG  >  SRR4302541.4825807/1‑94 (MQ=60)

                                                                                             AAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  <  SRR4302541.1169872/94‑1 (MQ=60)

                                                                                             AAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  <  SRR4302541.6654597/94‑1 (MQ=60)

GTGTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  >  NC_000913/1722825‑1723011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`