Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,728,403 T→C R431R (CGT→CGC)  lhr → Lhr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,728,4030TC99.1% 731.0 / ‑4.9 221R431R (CGT→CGC) lhrLhr
Reads supporting (aligned to +/- strand):  ref base T (0/2);  new base C (112/107);  total (112/109)
Fisher's exact test for biased strand distribution p-value = 2.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01

Only 100 of 229 total aligned reads displayed.

AACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGTACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCT  >  NC_000913/1728313‑1728492
                                                                                          |                                                                                         
aaCGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCAc                                                                                         <  2:4925263/93‑1 (MQ=255)
 aCGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCAcc                                                                                        >  2:3105731/1‑93 (MQ=255)
  cgccgcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCAccc                                                                                       >  2:4981565/1‑93 (MQ=255)
  cgccgcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCAccc                                                                                       <  1:2492145/93‑1 (MQ=255)
    ccgcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCgg                                                                                     >  2:2493366/1‑93 (MQ=255)
    ccgcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCgg                                                                                     <  2:678932/93‑1 (MQ=255)
     cgcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGc                                                                                    <  2:2744848/93‑1 (MQ=255)
     cgcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGc                                                                                    >  1:7796800/1‑93 (MQ=255)
      gcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTTCCCCGCACCCGGCg                                                                                   >  1:6465342/1‑93 (MQ=255)
      gcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGTACCCGGCg                                                                                   <  1:8644934/93‑1 (MQ=255)
      gcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCg                                                                                   >  1:5104664/1‑93 (MQ=255)
      gcTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCg                                                                                   >  1:1827046/1‑93 (MQ=255)
       cTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGt                                                                                  <  1:6850553/93‑1 (MQ=255)
          tCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGAt                                                                               >  2:5118157/1‑93 (MQ=255)
          tCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGAt                                                                               <  2:632976/93‑1 (MQ=255)
             gTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTa                                                                            <  2:2804809/93‑1 (MQ=255)
               tGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGt                                                                          <  1:5512256/93‑1 (MQ=255)
                gCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTc                                                                         >  1:6951731/1‑93 (MQ=255)
                gCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTc                                                                         >  2:4034328/1‑93 (MQ=255)
                gCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTc                                                                         <  2:7635331/93‑1 (MQ=255)
                   aGTGTGTTACAACGCATTGGTCTCGCCGGAAATCAGGTTGGCGGTGTATCTAAAGGTCTGTTTTTCACCCGTACCCGGCGTGATTTAGTCGAt                                                                      <  1:6008343/93‑1 (MQ=255)
                    gTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGAtt                                                                     <  1:2896999/93‑1 (MQ=255)
                    gTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGAtt                                                                     >  2:3741185/1‑93 (MQ=255)
                     tGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTc                                                                    <  1:7010042/93‑1 (MQ=255)
                     tGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTc                                                                    <  2:4419721/93‑1 (MQ=255)
                      gggTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTcc                                                                   <  2:2859484/93‑1 (MQ=255)
                       ggTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCg                                                                  >  2:7183584/1‑93 (MQ=255)
                       ggTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCg                                                                  >  1:7576411/1‑93 (MQ=255)
                       ggTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCg                                                                  >  2:1980303/1‑93 (MQ=255)
                        gTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGc                                                                 <  2:525030/93‑1 (MQ=255)
                         ttACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCa                                                                <  2:8669994/93‑1 (MQ=255)
                         ttACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCa                                                                >  1:2745141/1‑93 (MQ=255)
                         taaCAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCa                                                                >  2:6102306/3‑93 (MQ=255)
                          tACAGCGCATTGGGCCCGCCGGACATCAGGTTGGCGGTGTATCTAAGGGGCTGTTTTGCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAg                                                               <  2:6744864/93‑1 (MQ=255)
                            cAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTc                                                             >  2:7950101/1‑93 (MQ=255)
                            cAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTc                                                             >  2:6598211/1‑93 (MQ=255)
                            cAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTc                                                             >  1:766280/1‑93 (MQ=255)
                              aCGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCAt                                                           <  2:4830311/93‑1 (MQ=255)
                              aCGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCAt                                                           >  2:1425882/1‑93 (MQ=255)
                              aCGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTCCCCCCCGCACGCGGCGTGATTTAGTCGATTCCGCAGTCAt                                                           <  1:1346138/93‑1 (MQ=255)
                               cGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCAtt                                                          <  1:6655784/93‑1 (MQ=255)
                               cGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCAtt                                                          <  2:1094177/93‑1 (MQ=255)
                                 cATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGt                                                        >  1:7428268/1‑93 (MQ=255)
                                   ttGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTag                                                      <  2:8378400/93‑1 (MQ=255)
                                   ttGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTag                                                      <  2:5400331/93‑1 (MQ=255)
                                   ttGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTag                                                      >  2:574570/1‑93 (MQ=255)
                                   ttGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTag                                                      >  1:3670090/1‑93 (MQ=255)
                                     ggTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTagag                                                    >  1:801211/1‑93 (MQ=255)
                                     ggTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTagag                                                    <  2:815941/93‑1 (MQ=255)
                                     ggTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTagag                                                    <  1:4412095/93‑1 (MQ=255)
                                        cgcgCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAgtgt                                                 <  1:2122185/93‑1 (MQ=255)
                                        cgcgCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAgtgt                                                 >  1:7118014/1‑93 (MQ=255)
                                        cgcgCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTACCCCGTACTCGCCGTGCTTTAGTCGATTCCGCAGTCCTTGCagagaga                                                 >  2:5584683/1‑90 (MQ=255)
                                         gcgcCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTa                                                <  1:2791624/93‑1 (MQ=255)
                                            gcGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGt                                             <  1:6745949/92‑1 (MQ=255)
                                            ccGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGt                                             <  2:7533277/93‑1 (MQ=255)
                                              ggACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTc                                           <  1:1648727/93‑1 (MQ=255)
                                              ggACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTc                                           >  1:4540863/1‑93 (MQ=255)
                                              ggACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTc                                           >  1:2600049/1‑93 (MQ=255)
                                              ggACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGGGTATGttg                                           >  1:1205186/1‑92 (MQ=255)
                                               gACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCg                                          >  2:5851430/1‑93 (MQ=255)
                                               gACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCg                                          <  1:1727459/93‑1 (MQ=255)
                                                  aTCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcag                                       <  2:4890019/93‑1 (MQ=255)
                                                   tCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTTCGCAGGCATTGTAGAGTGTATGTTCgcagg                                      >  2:8080697/1‑93 (MQ=255)
                                                    cAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcaggc                                     <  1:1985031/93‑1 (MQ=255)
                                                    cAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcaggc                                     <  1:1925292/93‑1 (MQ=255)
                                                     aGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcaggca                                    <  1:2730312/93‑1 (MQ=255)
                                                      ggTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTTCGCAGTCATTGTAGAGTGTATGTTCgcaggcag                                   >  1:5155796/1‑93 (MQ=255)
                                                      ggTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcaggcag                                   >  1:7244133/1‑93 (MQ=255)
                                                      ggTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcaggcag                                   >  1:4797502/1‑93 (MQ=255)
                                                      ggTTGGCGGTGTATCTAAAGGGCTGTTTTCCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCgcaggcag                                   <  1:974018/93‑1 (MQ=255)
                                                        ttGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCaggcaggc                                 <  2:7325076/93‑1 (MQ=255)
                                                        ttGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCaggcaggc                                 <  1:5746500/93‑1 (MQ=255)
                                                         tGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCt                                >  2:7267558/1‑93 (MQ=255)
                                                          ggCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTg                               <  1:3368175/93‑1 (MQ=255)
                                                           gCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTgg                              <  1:5445512/93‑1 (MQ=255)
                                                            cGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGa                             <  1:8663970/93‑1 (MQ=255)
                                                            cGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGa                             >  1:1076139/1‑93 (MQ=255)
                                                            cGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGa                             <  2:1825005/93‑1 (MQ=255)
                                                             ggTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGaa                            >  1:8380246/1‑93 (MQ=255)
                                                              gtgtATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGaaa                           <  2:7359381/93‑1 (MQ=255)
                                                                    cTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGa                     >  2:3547381/1‑93 (MQ=255)
                                                                    cTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGa                     <  2:4413363/93‑1 (MQ=255)
                                                                     tAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGac                    >  1:8510422/1‑93 (MQ=255)
                                                                     tAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGac                    >  2:6717609/1‑93 (MQ=255)
                                                                       aaGGGCTGTTTTTCCCCCGCTCCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGacac                  <  2:6410702/93‑1 (MQ=255)
                                                                        aGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGAcacc                 <  1:1550509/93‑1 (MQ=255)
                                                                         gggCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGAcacca                >  2:295791/1‑93 (MQ=255)
                                                                           gCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACaccacc              <  1:8751846/93‑1 (MQ=255)
                                                                             tGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTTACACCACCGc            >  2:4289214/1‑93 (MQ=255)
                                                                              gTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCa           >  1:388582/1‑93 (MQ=255)
                                                                              gTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGAAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCa           >  1:4122701/1‑93 (MQ=255)
                                                                                  ttCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAAt       >  1:1465694/1‑93 (MQ=255)
                                                                                   tCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATc      >  2:7091235/1‑93 (MQ=255)
                                                                                   tCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATc      <  1:4230696/93‑1 (MQ=255)
                                                                                   tCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATc      <  2:330766/93‑1 (MQ=255)
                                                                                      cccGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCctc   >  2:1921609/1‑93 (MQ=255)
                                                                                      cccGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCctc   <  2:8800621/93‑1 (MQ=255)
                                                                                       ccGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCctct  >  1:2334485/1‑93 (MQ=255)
                                                                                       ccGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCctct  <  2:8633067/93‑1 (MQ=255)
                                                                                          |                                                                                         
AACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGTACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCT  >  NC_000913/1728313‑1728492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCAACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGTACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCGAC  >  NC_000913/1728310‑1728496
                                                                                             |                                                                                             
GGCAACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGC                                                                                               <  SRR4302541.8095063/94‑1 (MQ=60)
 GCAACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCA                                                                                              >  SRR4302541.7019803/1‑94 (MQ=60)
   AACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACC                                                                                            <  SRR4302541.4469614/94‑1 (MQ=60)
     CGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCG                                                                                          <  SRR4302541.2517256/94‑1 (MQ=60)
       CCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGC                                                                                        >  SRR4302541.7880573/1‑94 (MQ=60)
       CCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGC                                                                                        >  SRR4302541.3306522/1‑94 (MQ=60)
        CGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTTCCCCGCACCCGGCG                                                                                       >  SRR4302541.6531225/1‑94 (MQ=60)
        CGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCG                                                                                       >  SRR4302541.1844767/1‑94 (MQ=60)
        CGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCG                                                                                       >  SRR4302541.5157107/1‑94 (MQ=60)
        CGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCG                                                                                       >  SRR4302541.5225129/1‑94 (MQ=60)
         GCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGTACCCGGCGT                                                                                      <  SRR4302541.8737521/94‑1 (MQ=60)
         GCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGT                                                                                      >  SRR4302541.1561481/1‑94 (MQ=60)
         GCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGT                                                                                      <  SRR4302541.237202/94‑1 (MQ=60)
          CTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTG                                                                                     <  SRR4302541.6923779/94‑1 (MQ=60)
              CTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTT                                                                                 >  SRR4302541.7949186/1‑94 (MQ=60)
                 TGGCCAGTGGGTTAAACCGCATTGGTCGCCCCGGAAACCAGGTTGCCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGT                                                                              <  SRR4302541.652555/94‑1 (MQ=60)
                  TGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGTGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTC                                                                             <  SRR4302541.1949083/94‑1 (MQ=60)
                  TGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTC                                                                             <  SRR4302541.7737612/94‑1 (MQ=60)
                  TGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTC                                                                             >  SRR4302541.7025870/1‑94 (MQ=60)
                  TGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTC                                                                             >  SRR4302541.8754338/1‑94 (MQ=60)
                  TGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTC                                                                             <  SRR4302541.5568698/94‑1 (MQ=60)
                   GCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCG                                                                            <  SRR4302541.1135240/94‑1 (MQ=60)
                     CAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGAT                                                                          <  SRR4302541.2606625/94‑1 (MQ=60)
                      AGTGTGTTACAACGCATTGGTCTCGCCGGAAATCAGGTTGGCGGTGTATCTAAAGGTCTGTTTTTCACCCGTACCCGGCGTGATTTAGTCGATT                                                                         <  SRR4302541.6069908/94‑1 (MQ=60)
                       GTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTC                                                                        <  SRR4302541.2926108/94‑1 (MQ=60)
                        TGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCC                                                                       >  SRR4302541.8360168/1‑94 (MQ=60)
                        TGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCC                                                                       <  SRR4302541.7084606/94‑1 (MQ=60)
                         GGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCG                                                                      >  SRR4302541.7657366/1‑94 (MQ=60)
                          GGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGC                                                                     >  SRR4302541.7089858/1‑94 (MQ=60)
                          GGTTACAACGCATTGGTCGCGCCGGACATCAGGGTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGAGTTAGTCGATTCCGC                                                                     >  SRR4302541.5207748/1‑94 (MQ=60)
                           GTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCA                                                                    >  SRR4302541.2772706/1‑94 (MQ=60)
                           GTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTATCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCA                                                                    >  SRR4302541.4133739/1‑94 (MQ=60)
                             TACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGT                                                                  >  SRR4302541.1366755/1‑94 (MQ=60)
                              ACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTC                                                                 >  SRR4302541.773461/1‑94 (MQ=60)
                                 ACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATT                                                              >  SRR4302541.2766140/1‑94 (MQ=60)
                                 ACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTCCCCCCCGCACGCGGCGTGATTTAGTCGATTCCGCAGTCATT                                                              <  SRR4302541.1359420/94‑1 (MQ=60)
                                  CGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTG                                                             >  SRR4302541.5563944/1‑94 (MQ=60)
                                  CGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTG                                                             <  SRR4302541.6724065/94‑1 (MQ=60)
                                   GCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCTCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCTTTGT                                                            >  SRR4302541.6879723/1‑94 (MQ=60)
                                   GCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGT                                                            >  SRR4302541.7507682/1‑94 (MQ=60)
                                   GCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGT                                                            >  SRR4302541.6879724/1‑94 (MQ=60)
                                     ATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAG                                                          >  SRR4302541.3707301/1‑94 (MQ=60)
                                       TGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAG                                                        <  SRR4302541.8689038/94‑1 (MQ=60)
                                       TGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAG                                                        >  SRR4302541.808577/1‑94 (MQ=60)
                                        GGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGT                                                       <  SRR4302541.4456299/94‑1 (MQ=60)
                                         NNNGCGCNGNACATCAGNTTNNNNGTGTATCTAAAGGGCTGTTTTTCNCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTG                                                      <  SRR4302541.2632533/94‑1 (MQ=60)
                                         GTCGCGCCGTACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTG                                                      <  SRR4302541.6946915/94‑1 (MQ=60)
                                          TCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGT                                                     >  SRR4302541.7193828/1‑94 (MQ=60)
                                           CGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTA                                                    <  SRR4302541.2142720/94‑1 (MQ=60)
                                           CGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTA                                                    >  SRR4302541.7330295/1‑94 (MQ=60)
                                            GCGCCGGACATCAGGTTGGCGTTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTAT                                                   <  SRR4302541.2679571/94‑1 (MQ=60)
                                            GCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTAT                                                   <  SRR4302541.2634654/94‑1 (MQ=60)
                                            GCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTAT                                                   <  SRR4302541.2819819/94‑1 (MQ=60)
                                              GCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGT                                                 >  SRR4302541.855316/1‑94 (MQ=60)
                                               GCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTT                                                <  SRR4302541.6818039/94‑1 (MQ=60)
                                                CGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTC                                               >  SRR4302541.2626082/1‑94 (MQ=60)
                                                CGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTC                                               >  SRR4302541.4586763/1‑94 (MQ=60)
                                                CGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGGGTATGTTG                                               >  SRR4302541.1216900/1‑94 (MQ=60)
                                                 GGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCG                                              <  SRR4302541.2877522/94‑1 (MQ=60)
                                                 GGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCG                                              <  SRR4302541.1665013/94‑1 (MQ=60)
                                                 GGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCG                                              >  SRR4302541.1239486/1‑94 (MQ=60)
                                                  GACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGC                                             <  SRR4302541.1744329/94‑1 (MQ=60)
                                                    CATCAGGTTGGCGGTTTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAG                                           <  SRR4302541.1898630/94‑1 (MQ=60)
                                                     ATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGG                                          <  SRR4302541.8232264/94‑1 (MQ=60)
                                                     ATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGG                                          >  SRR4302541.163472/1‑94 (MQ=60)
                                                     ATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGG                                          >  SRR4302541.5588125/1‑94 (MQ=60)
                                                      TCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGC                                         >  SRR4302541.8851355/1‑94 (MQ=60)
                                                       CAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCA                                        <  SRR4302541.1943828/94‑1 (MQ=60)
                                                       CAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCA                                        <  SRR4302541.2004224/94‑1 (MQ=60)
                                                        AGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTTCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAG                                       >  SRR4302541.5208836/1‑94 (MQ=60)
                                                        AGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAG                                       >  SRR4302541.7321396/1‑94 (MQ=60)
                                                        AGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAG                                       <  SRR4302541.5319554/94‑1 (MQ=60)
                                                        AGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAG                                       <  SRR4302541.2757647/94‑1 (MQ=60)
                                                        AGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAG                                       >  SRR4302541.4846440/1‑94 (MQ=60)
                                                        AGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAG                                       <  SRR4302541.499693/94‑1 (MQ=60)
                                                         GGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGG                                      <  SRR4302541.983157/94‑1 (MQ=60)
                                                         GGTTGGCGGTGTATCTAAAGGGCTGTTTTCCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGG                                      <  SRR4302541.983156/94‑1 (MQ=60)
                                                          GTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGC                                     >  SRR4302541.1829190/1‑94 (MQ=60)
                                                           TTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCT                                    <  SRR4302541.7136225/94‑1 (MQ=60)
                                                           TTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCT                                    <  SRR4302541.4427113/94‑1 (MQ=60)
                                                           TTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCT                                    <  SRR4302541.7598928/94‑1 (MQ=60)
                                                           TTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCT                                    <  SRR4302541.6798988/94‑1 (MQ=60)
                                                           TTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCT                                    <  SRR4302541.5805023/94‑1 (MQ=60)
                                                             GGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGG                                  <  SRR4302541.3401770/94‑1 (MQ=60)
                                                              GCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGA                                 >  SRR4302541.1086168/1‑94 (MQ=60)
                                                              GCGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGA                                 <  SRR4302541.5501389/94‑1 (MQ=60)
                                                               CGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAA                                >  SRR4302541.8471024/1‑94 (MQ=60)
                                                               CGGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAA                                <  SRR4302541.8756699/94‑1 (MQ=60)
                                                                GGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAA                               >  SRR4302541.2036057/1‑94 (MQ=60)
                                                                GGTGTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAA                               <  SRR4302541.6710271/94‑1 (MQ=60)
                                                                GGTGTATCTAAAGGGCTGTTTTTCACCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGTCTGGAAA                               >  SRR4302541.5989971/1‑94 (MQ=60)
                                                                   GTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACC                            >  SRR4302541.2338255/1‑94 (MQ=60)
                                                                   GTATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACC                            <  SRR4302541.7755303/94‑1 (MQ=60)
                                                                    TATCTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCT                           >  SRR4302541.7301020/1‑94 (MQ=60)
                                                                       CTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGAC                        >  SRR4302541.8602045/1‑94 (MQ=60)
                                                                       CTAAAGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGAC                        >  SRR4302541.1801771/1‑94 (MQ=60)
                                                                           AGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCA                    <  SRR4302541.1566061/94‑1 (MQ=60)
                                                                           AGGGCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCA                    <  SRR4302541.1706424/94‑1 (MQ=60)
                                                                              GCTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCG                 <  SRR4302541.8845466/94‑1 (MQ=60)
                                                                               CTGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGC                >  SRR4302541.7716864/1‑94 (MQ=60)
                                                                                TGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGCTTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCA               >  SRR4302541.4689295/1‑94 (MQ=60)
                                                                                TGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCA               >  SRR4302541.392173/1‑94 (MQ=60)
                                                                                TGTTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGAAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCA               >  SRR4302541.4163421/1‑94 (MQ=60)
                                                                                  TTTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATA             >  SRR4302541.876387/1‑94 (MQ=60)
                                                                                   TTTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAA            <  SRR4302541.7082967/94‑1 (MQ=60)
                                                                                    TTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAAT           >  SRR4302541.1480050/1‑94 (MQ=60)
                                                                                    TTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAAT           >  SRR4302541.1480049/1‑94 (MQ=60)
                                                                                    TTTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAAT           <  SRR4302541.3718460/94‑1 (MQ=60)
                                                                                     TTCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATC          <  SRR4302541.8791824/94‑1 (MQ=60)
                                                                                      TCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCC         <  SRR4302541.4272851/94‑1 (MQ=60)
                                                                                      TCCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCC         <  SRR4302541.3959603/94‑1 (MQ=60)
                                                                                       CCCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCC        >  SRR4302541.2782545/1‑94 (MQ=60)
                                                                                        CCCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTC       >  SRR4302541.6118098/1‑94 (MQ=60)
                                                                                         CCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCT      >  SRR4302541.3290477/1‑94 (MQ=60)
                                                                                         CCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCT      >  SRR4302541.2357155/1‑94 (MQ=60)
                                                                                         CCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCT      >  SRR4302541.2357154/1‑94 (MQ=60)
                                                                                         CCCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCT      <  SRR4302541.3417463/94‑1 (MQ=60)
                                                                                          CCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTC     <  SRR4302541.4636844/94‑1 (MQ=60)
                                                                                          CCGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTC     <  SRR4302541.4253347/94‑1 (MQ=60)
                                                                                           CGCACCCTGCGTTATTTAGTCGATTCCGCAGTCATTGGAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.6832706/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACGCCACCGCATAATCCTCTCG    <  SRR4302541.638538/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.563242/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.5502797/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.8453719/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.4983209/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.551242/94‑1 (MQ=60)
                                                                                           CGCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCG    <  SRR4302541.7151055/94‑1 (MQ=60)
                                                                                            GCACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCTA   >  SRR4302541.8051715/1‑94 (MQ=60)
                                                                                             CACCCGGCGTGATTTAGTCGATTCCGCAGTGATTGTAGAGTGTATGTTCGCAGGCAGGATGGAAAAGGTGACACCACCGCATAATACTCTCGAC  >  SRR4302541.1333239/1‑94 (MQ=60)
                                                                                             CACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCGAC  >  SRR4302541.5728876/1‑94 (MQ=60)
                                                                                             CACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCGAC  <  SRR4302541.4665820/94‑1 (MQ=60)
                                                                                             |                                                                                             
GGCAACGCCGCTTTCTGTTGCCAGTGGGTTACAACGCATTGGTCGCGCCGGACATCAGGTTGGCGGTGTATCTAAAGGGCTGTTTTTCCCCCGTACCCGGCGTGATTTAGTCGATTCCGCAGTCATTGTAGAGTGTATGTTCGCAGGCAGGCTGGAAAACCTGACACCACCGCATAATCCTCTCGAC  >  NC_000913/1728310‑1728496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑