Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	969,158	C→T	R183C (CGC→TGC)	ycaQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	969,158	0	C	T	100.0%	834.8 / NA	218	R183C (CGC→TGC)	ycaQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (110/108); total (110/108)

Only 100 of 233 total aligned reads displayed.

GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG  >  NC_000913/969068‑969247

ggCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGGAAGGTGATGGTGATTGAACGGCGCAACTTCCAgtgc                                                                                         >  1:4611546/1‑93 (MQ=255)

ggCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAgtgc                                                                                         >  1:5957631/1‑93 (MQ=255)

 gCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGtgcg                                                                                        >  1:3582235/1‑93 (MQ=255)

 gCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGGTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGAGCAACTTCCAGtgcg                                                                                        >  1:3051268/1‑93 (MQ=255)

   tggtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTATTGCCGGAAAGGTGATGGTGATTGAACGGCGCGACTTCCCGTGCGtt                                                                                      >  1:5207438/1‑93 (MQ=255)

   tggtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGtt                                                                                      >  1:3857518/1‑93 (MQ=255)

    ggtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGttt                                                                                     <  1:1702270/93‑1 (MQ=255)

    ggtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGttt                                                                                     <  1:4946141/93‑1 (MQ=255)

     gtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTa                                                                                    <  2:5001268/93‑1 (MQ=255)

     gtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTa                                                                                    <  2:5827864/93‑1 (MQ=255)

          aaTGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAtt                                                                               <  1:3538264/93‑1 (MQ=255)

           aTGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAttt                                                                              >  2:1222341/1‑93 (MQ=255)

           aTGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAttt                                                                              >  2:2586853/1‑93 (MQ=255)

           aTGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATCGAACGGCGCAACTTCCAGTGCGTTTATGAttt                                                                              >  2:3007730/1‑93 (MQ=255)

            tGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTa                                                                             <  1:4773717/93‑1 (MQ=255)

             ggAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTaa                                                                            >  2:1097088/1‑93 (MQ=255)

              gAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAc                                                                           >  2:175816/1‑93 (MQ=255)

              gAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAc                                                                           >  2:1751516/1‑93 (MQ=255)

              gAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGAGCAACTTCCAGTGCGTTTATGATTTAAc                                                                           >  2:6212269/1‑93 (MQ=255)

               aaGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAcc                                                                          >  1:4402213/1‑93 (MQ=255)

               aaGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAcc                                                                          >  2:875406/1‑93 (MQ=255)

                aGCCGCATAAACGGCATCTGGGAGGTTTATTTACTGCCGGGAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAccc                                                                         >  1:655057/1‑93 (MQ=255)

                aGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAccc                                                                         <  1:4060844/93‑1 (MQ=255)

                aGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAccc                                                                         <  1:2830895/93‑1 (MQ=255)

                 gCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCa                                                                        >  1:2344266/1‑93 (MQ=255)

                   cGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCAcc                                                                      >  1:953744/1‑93 (MQ=255)

                   cGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCAcc                                                                      >  1:2381869/1‑93 (MQ=255)

                      aTAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgtg                                                                   >  1:3319825/1‑93 (MQ=255)

                       tAAACGGCATCTGGAAGGTTTATTTACTGCTGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgtgt                                                                  <  2:3274557/93‑1 (MQ=255)

                       tAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgtgt                                                                  >  1:733127/1‑93 (MQ=255)

                         aaCGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCa                                                                >  1:376595/1‑93 (MQ=255)

                            ggCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGc                                                             <  1:4004332/93‑1 (MQ=255)

                            ggCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGc                                                             >  1:6446660/1‑93 (MQ=255)

                            ggCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGc                                                             >  1:5809868/1‑93 (MQ=255)

                             gCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGcc                                                            >  1:6416039/1‑93 (MQ=255)

                              cATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCt                                                           >  2:1596590/1‑93 (MQ=255)

                              cATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCt                                                           >  2:5368868/1‑93 (MQ=255)

                              cATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCt                                                           <  1:2670960/93‑1 (MQ=255)

                               aTCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTg                                                          <  2:4898689/93‑1 (MQ=255)

                                tCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGa                                                         >  1:226294/1‑93 (MQ=255)

                                tCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGa                                                         >  2:2006007/1‑93 (MQ=255)

                                  tGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACt                                                       >  1:6007891/1‑93 (MQ=255)

                                   ggAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTg                                                      >  1:142016/1‑93 (MQ=255)

                                   ggAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTg                                                      >  2:1904684/1‑93 (MQ=255)

                                   ggAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTg                                                      <  1:2028901/93‑1 (MQ=255)

                                     aaGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTggg                                                    >  1:4506055/1‑93 (MQ=255)

                                       ggTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGgat                                                  <  2:672370/93‑1 (MQ=255)

                                         tttatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGgatga                                                <  1:5691383/93‑1 (MQ=255)

                                         tttatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGgatga                                                >  2:2489315/1‑93 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              <  2:2925552/93‑1 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              <  1:4718418/93‑1 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              <  1:5582458/93‑1 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              <  2:5843294/93‑1 (MQ=255)

                                             tttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAg                                            >  1:2135805/1‑93 (MQ=255)

                                             tttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAg                                            >  1:3189486/1‑93 (MQ=255)

                                               taCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgcg                                          <  1:1458573/93‑1 (MQ=255)

                                                aCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgcgc                                         <  1:5324340/93‑1 (MQ=255)

                                                 cTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGcgcg                                        >  2:2099827/1‑93 (MQ=255)

                                                   gCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAt                                      <  2:339756/93‑1 (MQ=255)

                                                    ccGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtc                                     <  2:919524/93‑1 (MQ=255)

                                                     cGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtct                                    <  1:6053968/93‑1 (MQ=255)

                                                     cGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtct                                    <  1:5236579/93‑1 (MQ=255)

                                                     cGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtct                                    <  1:428832/93‑1 (MQ=255)

                                                      ggAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtctc                                   >  2:1452948/1‑93 (MQ=255)

                                                      ggAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtctc                                   >  2:1353676/1‑93 (MQ=255)

                                                      ggAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtctc                                   >  2:815306/1‑93 (MQ=255)

                                                      ggAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtctc                                   <  2:4752233/93‑1 (MQ=255)

                                                       gAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCg                                  >  1:6174542/1‑93 (MQ=255)

                                                       gAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCg                                  >  2:4674378/1‑93 (MQ=255)

                                                        aaaGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGt                                 <  2:1729386/93‑1 (MQ=255)

                                                        aaaGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGt                                 <  1:1380853/93‑1 (MQ=255)

                                                        aaaGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGt                                 <  2:3684792/93‑1 (MQ=255)

                                                         aaGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGtt                                <  2:5639228/93‑1 (MQ=255)

                                                         aaGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGtt                                >  2:401481/1‑93 (MQ=255)

                                                          aGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGttt                               <  2:731541/93‑1 (MQ=255)

                                                            gtgatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCg                             >  2:39181/1‑93 (MQ=255)

                                                                 ggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAAc                        <  2:6418757/93‑1 (MQ=255)

                                                                   tgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAg                      <  2:5134518/93‑1 (MQ=255)

                                                                   tgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAg                      <  1:3636122/93‑1 (MQ=255)

                                                                    gatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGa                     <  1:1009407/93‑1 (MQ=255)

                                                                    gatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATATCGTTTCGCAAACAGa                     >  1:218951/1‑93 (MQ=255)

                                                                     atTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGaa                    <  1:4122236/93‑1 (MQ=255)

                                                                     atTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGaa                    <  1:254694/93‑1 (MQ=255)

                                                                       tGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGc                  <  2:6025041/93‑1 (MQ=255)

                                                                        gAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCa                 <  2:1543467/93‑1 (MQ=255)

                                                                         aaCGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAg                >  2:3967846/1‑93 (MQ=255)

                                                                            ggCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGaaa             >  1:611074/1‑93 (MQ=255)

                                                                             gcgcAACTTCCATTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAat            <  1:3465349/93‑1 (MQ=255)

                                                                               gcAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatca          >  1:1682489/1‑93 (MQ=255)

                                                                                  aCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAAtcatca       >  2:45174/1‑93 (MQ=255)

                                                                                  aCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAAtcatca       >  2:5779740/1‑93 (MQ=255)

                                                                                  aCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAAtcatca       <  2:3560670/93‑1 (MQ=255)

                                                                                   cTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATcatcat      <  2:121218/93‑1 (MQ=255)

                                                                                   cTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATcatcat      <  2:626963/93‑1 (MQ=255)

                                                                                     tCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGc    <  2:2499963/93‑1 (MQ=255)

                                                                                     tCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGc    >  1:5105418/1‑93 (MQ=255)

                                                                                      ccAGTGCGTTTATGATTTACCCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCt   >  1:6303597/1‑93 (MQ=255)

                                                                                      ccAGTGAGTTTATGATTTAACCCACCGTGTAATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCt   <  1:4236177/93‑1 (MQ=255)

                                                                                       cAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTg  >  1:1772588/1‑93 (MQ=255)

                                                                                       cAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTg  >  2:544624/1‑93 (MQ=255)

GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG  >  NC_000913/969068‑969247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  NC_000913/969065‑969250

AGCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGT                                                                                              <  SRR4302534.3173785/94‑1 (MQ=60)

 GCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTG                                                                                             <  SRR4302534.619020/94‑1 (MQ=60)

  CGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGGAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGC                                                                                            >  SRR4302534.4736706/1‑94 (MQ=60)

  CGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGC                                                                                            >  SRR4302534.6119394/1‑94 (MQ=60)

   GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCG                                                                                           >  SRR4302534.3678592/1‑94 (MQ=60)

   GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCG                                                                                           >  SRR4302534.6031743/1‑94 (MQ=60)

   GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGGTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGAGCAACTTCCAGTGCG                                                                                           >  SRR4302534.3131318/1‑94 (MQ=60)

     CTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTATTGCCGGAAAGGTGATGGTGATTGAACGGCGCGACTTCCCGTGCGTT                                                                                         >  SRR4302534.5347955/1‑94 (MQ=60)

     CTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTT                                                                                         >  SRR4302534.3961076/1‑94 (MQ=60)

     CTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTT                                                                                         <  SRR4302534.2478458/94‑1 (MQ=60)

     CTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTT                                                                                         <  SRR4302534.5722805/94‑1 (MQ=60)

      TGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTTCGTTT                                                                                        >  SRR4302534.6036699/1‑94 (MQ=60)

      TGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTT                                                                                        <  SRR4302534.6385771/94‑1 (MQ=60)

      TGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTT                                                                                        >  SRR4302534.6124414/1‑94 (MQ=60)

      TGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTT                                                                                        >  SRR4302534.6178426/1‑94 (MQ=60)

       GGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTA                                                                                       <  SRR4302534.1746496/94‑1 (MQ=60)

       GGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTA                                                                                       <  SRR4302534.5080137/94‑1 (MQ=60)

       GGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTA                                                                                       <  SRR4302534.3757891/94‑1 (MQ=60)

         TGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATT                                                                                     >  SRR4302534.2539462/1‑94 (MQ=60)

           GGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAT                                                                                   >  SRR4302534.5308605/1‑94 (MQ=60)

            GAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATT                                                                                  <  SRR4302534.4198914/94‑1 (MQ=60)

             AATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTT                                                                                 <  SRR4302534.3633445/94‑1 (MQ=60)

              ATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTA                                                                                >  SRR4302534.5754800/1‑94 (MQ=60)

               TGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAA                                                                               <  SRR4302534.4903332/94‑1 (MQ=60)

               TGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAA                                                                               <  SRR4302534.5925900/94‑1 (MQ=60)

                GGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAC                                                                              >  SRR4302534.2346097/1‑94 (MQ=60)

                GGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAC                                                                              <  SRR4302534.1536109/94‑1 (MQ=60)

                 GAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACC                                                                             >  SRR4302534.4520992/1‑94 (MQ=60)

                  AAGCCGCATAAACGGCATCTGGGAGGTTTATTTACTGCCGGGAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCC                                                                            >  SRR4302534.671013/1‑94 (MQ=60)

                  AAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCC                                                                            <  SRR4302534.5495113/94‑1 (MQ=60)

                   AGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCA                                                                           <  SRR4302534.4169769/94‑1 (MQ=60)

                   AGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCA                                                                           >  SRR4302534.2406480/1‑94 (MQ=60)

                   AGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCA                                                                           <  SRR4302534.6566672/94‑1 (MQ=60)

                   AGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCA                                                                           <  SRR4302534.2905290/94‑1 (MQ=60)

                    GCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCAC                                                                          <  SRR4302534.1640166/94‑1 (MQ=60)

                     CCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTTGACGGCGCAACTTCCAGTGCGTTTATGGTTTAATCCACC                                                                         >  SRR4302534.4399212/1‑94 (MQ=60)

                     CCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACC                                                                         >  SRR4302534.978029/1‑94 (MQ=60)

                     CCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACC                                                                         >  SRR4302534.2445153/1‑94 (MQ=60)

                      CGCATAAACTGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGGTTATGATTTAACCCACCG                                                                        >  SRR4302534.6496445/1‑94 (MQ=60)

                      CGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCG                                                                        <  SRR4302534.5086107/94‑1 (MQ=60)

                       GCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGT                                                                       >  SRR4302534.4551219/1‑94 (MQ=60)

                        GATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTG                                                                      >  SRR4302534.3408592/1‑94 (MQ=60)

                         ATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGT                                                                     >  SRR4302534.751257/1‑94 (MQ=60)

                          TAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTC                                                                    >  SRR4302534.2168220/1‑94 (MQ=60)

                           AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCA                                                                   >  SRR4302534.4892201/1‑94 (MQ=60)

                           AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCA                                                                   <  SRR4302534.938821/94‑1 (MQ=60)

                           AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCA                                                                   >  SRR4302534.386219/1‑94 (MQ=60)

                            AACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCAT                                                                  >  SRR4302534.6616634/1‑94 (MQ=60)

                            AACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCAT                                                                  >  SRR4302534.4747938/1‑94 (MQ=60)

                              CGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGC                                                                >  SRR4302534.6620389/1‑94 (MQ=60)

                              CGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGC                                                                >  SRR4302534.5967548/1‑94 (MQ=60)

                               GGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCC                                                               >  SRR4302534.6589141/1‑94 (MQ=60)

                               GGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCC                                                               <  SRR4302534.4111553/94‑1 (MQ=60)

                                GCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCT                                                              <  SRR4302534.717137/94‑1 (MQ=60)

                                 CATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTG                                                             <  SRR4302534.2741551/94‑1 (MQ=60)

                                  ATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGA                                                            >  SRR4302534.232201/1‑94 (MQ=60)

                                    CTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACT                                                          <  SRR4302534.2998144/94‑1 (MQ=60)

                                    CTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACT                                                          >  SRR4302534.5249710/1‑94 (MQ=60)

                                    CTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACT                                                          >  SRR4302534.6171122/1‑94 (MQ=60)

                                     TGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTG                                                         >  SRR4302534.145732/1‑94 (MQ=60)

                                      GGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGG                                                        <  SRR4302534.2081961/94‑1 (MQ=60)

                                      GGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGG                                                        >  SRR4302534.3572720/1‑94 (MQ=60)

                                       GAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGG                                                       <  SRR4302534.2415993/94‑1 (MQ=60)

                                       GAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGG                                                       >  SRR4302534.4628065/1‑94 (MQ=60)

                                        TAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGA                                                      >  SRR4302534.3409944/1‑94 (MQ=60)

                                         AGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGAT                                                     <  SRR4302534.4071807/94‑1 (MQ=60)

                                         AGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGAT                                                     >  SRR4302534.6268990/1‑94 (MQ=60)

                                          GGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATG                                                    <  SRR4302534.2227332/94‑1 (MQ=60)

                                          GGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATG                                                    >  SRR4302534.4603269/1‑94 (MQ=60)

                                            TTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGAT                                                  <  SRR4302534.5845526/94‑1 (MQ=60)

                                              TATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGGCTGGGATGATGA                                                <  SRR4302534.3093736/94‑1 (MQ=60)

                                              TATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGA                                                <  SRR4302534.5733296/94‑1 (MQ=60)

                                              TATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGA                                                <  SRR4302534.4846561/94‑1 (MQ=60)

                                              TATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGA                                                >  SRR4302534.3875812/1‑94 (MQ=60)

                                               ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTTGGATGATGAG                                               >  SRR4302534.228278/1‑94 (MQ=60)

                                               ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               >  SRR4302534.189676/1‑94 (MQ=60)

                                               ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               >  SRR4302534.3273912/1‑94 (MQ=60)

                                               ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               <  SRR4302534.1269507/94‑1 (MQ=60)

                                               ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               <  SRR4302534.1484560/94‑1 (MQ=60)

                                               ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               >  SRR4302534.2192113/1‑94 (MQ=60)

                                                 TTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCG                                             <  SRR4302534.286794/94‑1 (MQ=60)

                                                  TACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGC                                            <  SRR4302534.1790777/94‑1 (MQ=60)

                                                  TACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGC                                            <  SRR4302534.1496934/94‑1 (MQ=60)

                                                   ACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCG                                           <  SRR4302534.5467952/94‑1 (MQ=60)

                                                      GCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATC                                        <  SRR4302534.664010/94‑1 (MQ=60)

                                                       CCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCT                                       <  SRR4302534.6335701/94‑1 (MQ=60)

                                                       CCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCT                                       <  SRR4302534.3301645/94‑1 (MQ=60)

                                                        CGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTC                                      >  SRR4302534.1453798/1‑94 (MQ=60)

                                                        CGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTC                                      <  SRR4302534.6218595/94‑1 (MQ=60)

                                                        CGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTC                                      <  SRR4302534.5377957/94‑1 (MQ=60)

                                                        CGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTC                                      <  SRR4302534.439780/94‑1 (MQ=60)

                                                         GGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCG                                     >  SRR4302534.6342541/1‑94 (MQ=60)

                                                           AAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTT                                   <  SRR4302534.1417217/94‑1 (MQ=60)

                                                           AAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTT                                   >  SRR4302534.3240765/1‑94 (MQ=60)

                                                            AAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTT                                  >  SRR4302534.2291251/1‑94 (MQ=60)

                                                            AAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTT                                  >  SRR4302534.3690773/1‑94 (MQ=60)

                                                            AAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTT                                  >  SRR4302534.5425476/1‑94 (MQ=60)

                                                             AGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTC                                 <  SRR4302534.4689403/94‑1 (MQ=60)

                                                             AGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTC                                 <  SRR4302534.1958942/94‑1 (MQ=60)

                                                             AGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTC                                 <  SRR4302534.3666729/94‑1 (MQ=60)

                                                              GGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCG                                <  SRR4302534.4137548/94‑1 (MQ=60)

                                                                   TGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAAC                           >  SRR4302534.5352292/1‑94 (MQ=60)

                                                                     GTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAG                         <  SRR4302534.4852307/94‑1 (MQ=60)

                                                                      TGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGA                        <  SRR4302534.3733859/94‑1 (MQ=60)

                                                                      TGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATATCGTTTCGCAAACAGA                        >  SRR4302534.224689/1‑94 (MQ=60)

                                                                       GATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAA                       >  SRR4302534.6272518/1‑94 (MQ=60)

                                                                       GATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAA                       <  SRR4302534.1035336/94‑1 (MQ=60)

                                                                        ATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAG                      <  SRR4302534.261330/94‑1 (MQ=60)

                                                                        ATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAG                      <  SRR4302534.4233184/94‑1 (MQ=60)

                                                                         TTGAGCGGCACAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGC                     <  SRR4302534.434312/94‑1 (MQ=60)

                                                                           GAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAG                   >  SRR4302534.4416768/1‑94 (MQ=60)

                                                                            AACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGA                  >  SRR4302534.3725555/1‑94 (MQ=60)

                                                                            AACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGA                  >  SRR4302534.4325615/1‑94 (MQ=60)

                                                                              CGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAA                <  SRR4302534.760038/94‑1 (MQ=60)

                                                                              CGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAA                >  SRR4302534.625922/1‑94 (MQ=60)

                                                                                GCGCAACTTCCATTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATC              <  SRR4302534.3558507/94‑1 (MQ=60)

                                                                                 CGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCA             >  SRR4302534.1726250/1‑94 (MQ=60)

                                                                                  GCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCAT            >  SRR4302534.1730646/1‑94 (MQ=60)

                                                                                   CAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATC           >  SRR4302534.341642/1‑94 (MQ=60)

                                                                                    AACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCA          >  SRR4302534.4920061/1‑94 (MQ=60)

                                                                                      CTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATG        <  SRR4302534.1013956/94‑1 (MQ=60)

                                                                                       TTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGC       <  SRR4302534.70486/94‑1 (MQ=60)

                                                                                       TTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGC       >  SRR4302534.5243198/1‑94 (MQ=60)

                                                                                        TCCAGTGCGTTTATGATTTACCCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCT      >  SRR4302534.6474061/1‑94 (MQ=60)

                                                                                        TCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCT      <  SRR4302534.268468/94‑1 (MQ=60)

                                                                                         CCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG     >  SRR4302534.1818603/1‑94 (MQ=60)

                                                                                         CCAGTGAGTTTATGATTTAACCCACCGTGTAATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG     <  SRR4302534.4350367/94‑1 (MQ=60)

                                                                                          CAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGG    >  SRR4302534.3346505/1‑94 (MQ=60)

                                                                                          CAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGG    >  SRR4302534.706756/1‑94 (MQ=60)

                                                                                          CAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGG    <  SRR4302534.404118/94‑1 (MQ=60)

                                                                                            GTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  SRR4302534.3433207/1‑94 (MQ=60)

                                                                                            GTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  <  SRR4302534.2834168/94‑1 (MQ=60)

AGCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  NC_000913/969065‑969250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`