Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	969,158	C→T	R183C (CGC→TGC)	ycaQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	969,158	0	C	T	99.3%	930.1 / ‑4.2	270	R183C (CGC→TGC)	ycaQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (141/127); total (142/128)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01

Only 100 of 280 total aligned reads displayed.

GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG  >  NC_000913/969068‑969247

ggCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAgtgc                                                                                         <  1:8130753/93‑1 (MQ=255)

ggCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAgtgc                                                                                         <  2:5966128/93‑1 (MQ=255)

 gCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGtgcg                                                                                        >  1:409326/1‑93 (MQ=255)

  cTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGt                                                                                       >  1:878613/1‑93 (MQ=255)

   tggtggGAATGGAAGCCGCATAAACGGCATCTTGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGtt                                                                                      <  2:7719054/93‑1 (MQ=255)

   tggtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGtt                                                                                      >  2:2577996/1‑93 (MQ=255)

   tggtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGtt                                                                                      <  2:6207521/93‑1 (MQ=255)

     gtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTa                                                                                    >  2:4825099/1‑93 (MQ=255)

     gtggGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTa                                                                                    <  1:7396469/93‑1 (MQ=255)

       gggAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTAta                                                                                  >  2:7150850/1‑92 (MQ=255)

         gAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAt                                                                                >  2:8793502/1‑93 (MQ=255)

          aaTGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAtt                                                                               <  1:461077/93‑1 (MQ=255)

             ggAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCTTTTATGATTTaa                                                                            <  1:2920947/93‑1 (MQ=255)

              gAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAc                                                                           >  1:3807055/1‑93 (MQ=255)

                aGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAccc                                                                         <  2:4572352/93‑1 (MQ=255)

                 gCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCa                                                                        >  1:7589623/1‑93 (MQ=255)

                  ccGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCAc                                                                       <  2:5285086/93‑1 (MQ=255)

                    gCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCg                                                                     >  1:5206094/1‑93 (MQ=255)

                     cATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgt                                                                    <  2:5962535/93‑1 (MQ=255)

                      aTAAACGGCATCTGGAAGGTTTATTTACTGCCGGAGAGGAGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgtg                                                                   >  2:1389454/1‑93 (MQ=255)

                      aTAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgtg                                                                   <  2:5784905/93‑1 (MQ=255)

                       tAAACTGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCgtgt                                                                  >  1:3529245/1‑93 (MQ=255)

                         aaCGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCCGTGCGTTTATGATTTAACCCACCGTGTCa                                                                >  1:2655584/1‑93 (MQ=255)

                         aaCGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCa                                                                >  1:4736684/1‑93 (MQ=255)

                           cGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATg                                                              <  1:8159491/93‑1 (MQ=255)

                              cATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCt                                                           >  2:471901/1‑93 (MQ=255)

                               aTCTGGAAGTTGTATTTACTGCCGGAAAGGGGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTg                                                          <  2:6738129/93‑1 (MQ=255)

                               aTCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTg                                                          >  1:4534930/1‑93 (MQ=255)

                                tCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGa                                                         >  1:5941823/1‑93 (MQ=255)

                                tCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTAAACCCACCGTGTCATGCCTGa                                                         >  2:7124370/1‑93 (MQ=255)

                                 cTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTgct                                                        >  2:6812535/1‑91 (MQ=255)

                                   ggAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTg                                                      >  2:4024061/1‑93 (MQ=255)

                                    gAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTgg                                                     >  1:5626089/1‑93 (MQ=255)

                                    gAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTgg                                                     >  2:7792568/1‑93 (MQ=255)

                                     aaGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTggg                                                    >  1:4888684/1‑93 (MQ=255)

                                     aaGGTTTATTTACTGCCGGAAAGGTGAT‑GTGATTGAACCGCGCAACTTCCAGTGCGTTTATGATTTAAACCACCGTGTCATGCCTGCCTGGga                                                   >  1:3332603/1‑93 (MQ=255)

                                      aGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGga                                                   <  1:3857213/93‑1 (MQ=255)

                                      aGGTTTATTTACCGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGga                                                   >  1:2317114/1‑93 (MQ=255)

                                         tttatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGgatga                                                <  2:2532190/93‑1 (MQ=255)

                                          ttatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGgatgat                                               <  1:5655673/93‑1 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              >  2:1036846/1‑93 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              >  1:3291817/1‑93 (MQ=255)

                                           tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGatgatg                                              >  1:5267462/1‑93 (MQ=255)

                                             tttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAg                                            >  2:1007660/1‑93 (MQ=255)

                                             tttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAg                                            <  1:1933084/93‑1 (MQ=255)

                                             tttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAg                                            <  1:2511330/93‑1 (MQ=255)

                                              ttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTATCCCACCGTGTCATGCCTGACTGGGATGATGAgc                                           >  1:8481293/1‑93 (MQ=255)

                                              ttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgc                                           >  1:7715254/1‑93 (MQ=255)

                                              ttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgc                                           <  2:6870403/93‑1 (MQ=255)

                                               taCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgcg                                          >  2:4424865/1‑93 (MQ=255)

                                               taCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgcg                                          >  1:7849611/1‑93 (MQ=255)

                                                aCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAgcgc                                         <  2:3190666/93‑1 (MQ=255)

                                                 cTGCCGGAAAGGTGATGGTGATTGAACGGCTCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGcgcg                                        <  1:6309280/93‑1 (MQ=255)

                                                    ccGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtc                                     >  2:1675685/1‑93 (MQ=255)

                                                    ccGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtc                                     <  2:5030391/93‑1 (MQ=255)

                                                     cGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtct                                    >  1:670800/1‑93 (MQ=255)

                                                      ggAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAtctc                                   >  2:1957390/1‑93 (MQ=255)

                                                       gAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCg                                  >  1:1474308/1‑93 (MQ=255)

                                                       gAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCg                                  >  2:2269216/1‑93 (MQ=255)

                                                       gAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCg                                  <  2:7085159/93‑1 (MQ=255)

                                                        aaaGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGt                                 >  2:5143257/1‑93 (MQ=255)

                                                          aGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGttt                               <  1:2497341/93‑1 (MQ=255)

                                                          aGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGttt                               <  2:3849340/93‑1 (MQ=255)

                                                          aGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGttt                               >  2:1838864/1‑93 (MQ=255)

                                                           ggtgatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTc                              >  2:3653009/1‑93 (MQ=255)

                                                           ggtgatggtgatTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTc                              <  1:7101813/93‑1 (MQ=255)

                                                            gtgatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCg                             >  1:7208095/1‑93 (MQ=255)

                                                            gtgatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCg                             >  2:4958085/1‑93 (MQ=255)

                                                             tgatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGc                            >  2:8055976/1‑93 (MQ=255)

                                                             tgatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGc                            <  2:8407537/93‑1 (MQ=255)

                                                              gatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCa                           >  2:356713/1‑93 (MQ=255)

                                                              gatggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCa                           <  2:263721/93‑1 (MQ=255)

                                                                tggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCaaa                         >  1:1380560/1‑93 (MQ=255)

                                                                tggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCaaa                         >  1:2032664/1‑93 (MQ=255)

                                                                tggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCaaa                         <  2:6296785/93‑1 (MQ=255)

                                                                 ggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAAc                        >  2:5872454/1‑93 (MQ=255)

                                                                 ggtgatTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAAc                        <  1:5717510/93‑1 (MQ=255)

                                                                     atTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGaa                    >  2:8552807/1‑93 (MQ=255)

                                                                      ttGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAg                   <  1:1006201/93‑1 (MQ=255)

                                                                       tGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGc                  <  1:1786600/93‑1 (MQ=255)

                                                                       tGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGc                  <  1:6102787/93‑1 (MQ=255)

                                                                        gAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCa                 <  2:3876655/93‑1 (MQ=255)

                                                                          aCGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGa               <  2:7061394/93‑1 (MQ=255)

                                                                           cGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGaa              <  1:3925362/93‑1 (MQ=255)

                                                                           cGGCGCAACTGCCATTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGaa              <  2:6676304/93‑1 (MQ=255)

                                                                            ggCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGaaa             >  2:3021588/1‑93 (MQ=255)

                                                                               gcAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatca          <  1:6518715/93‑1 (MQ=255)

                                                                                cAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcat         <  1:4311775/93‑1 (MQ=255)

                                                                                 aaCTTCCAGTGCGTTTATGATTTCACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcagc        >  2:8217729/1‑91 (MQ=255)

                                                                                 aaCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcatc        <  1:1697027/93‑1 (MQ=255)

                                                                                 aaCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcatc        <  1:1164074/93‑1 (MQ=255)

                                                                                 aaCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcatc        <  1:2082404/93‑1 (MQ=255)

                                                                                 aaCTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcatc        >  1:8327724/1‑93 (MQ=255)

                                                                                 aaCTTCCAGTGCGTTTATGATTGAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAatcatc        <  2:1806964/93‑1 (MQ=255)

                                                                                   cTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATcatcat      <  2:2372675/93‑1 (MQ=255)

                                                                                    ttCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATg     >  1:6427739/1‑93 (MQ=255)

                                                                                     tCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGc    <  2:7470999/93‑1 (MQ=255)

                                                                                     tCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGc    <  1:3155148/93‑1 (MQ=255)

                                                                                      ccAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCt   >  2:2771534/1‑93 (MQ=255)

                                                                                       cAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTg  >  1:5416418/1‑93 (MQ=255)

GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG  >  NC_000913/969068‑969247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  NC_000913/969066‑969250

GCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTG                                                                                             <  SRR4302541.957363/94‑1 (MQ=60)

GCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTG                                                                                             <  SRR4302541.8049495/94‑1 (MQ=60)

  GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCG                                                                                           >  SRR4302541.413118/1‑94 (MQ=60)

  GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCG                                                                                           <  SRR4302541.4325568/94‑1 (MQ=60)

  GGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCG                                                                                           <  SRR4302541.8219754/94‑1 (MQ=60)

   GCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGT                                                                                          >  SRR4302541.886640/1‑94 (MQ=60)

    CTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTT                                                                                         >  SRR4302541.5548818/1‑94 (MQ=60)

    CTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTT                                                                                         >  SRR4302541.5655668/1‑94 (MQ=60)

     TGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTT                                                                                        >  SRR4302541.5357249/1‑94 (MQ=60)

       GTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTAT                                                                                      <  SRR4302541.3953360/94‑1 (MQ=60)

       GTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTAT                                                                                      <  SRR4302541.7475564/94‑1 (MQ=60)

        TGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATG                                                                                     <  SRR4302541.7016387/94‑1 (MQ=60)

          GGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAT                                                                                   >  SRR4302541.4164112/1‑94 (MQ=60)

          GGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAT                                                                                   >  SRR4302541.575345/1‑94 (MQ=60)

          GGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGAT                                                                                   <  SRR4302541.7831247/94‑1 (MQ=60)

            AATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTT                                                                                 <  SRR4302541.2913534/94‑1 (MQ=60)

            AATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTT                                                                                 <  SRR4302541.465462/94‑1 (MQ=60)

              TGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAA                                                                               <  SRR4302541.7594231/94‑1 (MQ=60)

              TGGAAGCCGCATAAACGGCATCTGGAAGGGTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAA                                                                               >  SRR4302541.1148694/1‑94 (MQ=60)

               tgaaagCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCTTTTATGATTTAAC                                                                              <  SRR4302541.2950313/88‑1 (MQ=60)

               GGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCTTTTATGATTTAAC                                                                              <  SRR4302541.2950316/94‑1 (MQ=60)

               GGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAC                                                                              <  SRR4302541.2603843/94‑1 (MQ=60)

               GGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAAC                                                                              >  SRR4302541.3845391/1‑94 (MQ=60)

                GAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACC                                                                             >  SRR4302541.2458142/1‑94 (MQ=60)

                 AAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCC                                                                            >  SRR4302541.1454093/1‑94 (MQ=60)

                  AGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCA                                                                           >  SRR4302541.7670705/1‑94 (MQ=60)

                  AGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCA                                                                           >  SRR4302541.7670706/1‑94 (MQ=60)

                    CCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACC                                                                         >  SRR4302541.994077/1‑94 (MQ=60)

                     CGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCG                                                                        >  SRR4302541.4648052/1‑94 (MQ=60)

                     CGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCG                                                                        >  SRR4302541.5259724/1‑94 (MQ=60)

                     CGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCG                                                                        >  SRR4302541.367420/1‑94 (MQ=60)

                      GCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGT                                                                       <  SRR4302541.5263010/94‑1 (MQ=60)

                        ATAAACTGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGT                                                                     >  SRR4302541.3564787/1‑94 (MQ=60)

                        ATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGT                                                                     >  SRR4302541.220452/1‑94 (MQ=60)

                         TAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTC                                                                    <  SRR4302541.389176/94‑1 (MQ=60)

                         TAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGGGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTC                                                                    >  SRR4302541.6362110/1‑94 (MQ=60)

                          AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCCGTGCGTTTATGATTTAACCCACCGTGTCA                                                                   >  SRR4302541.2682003/1‑94 (MQ=60)

                          AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCA                                                                   >  SRR4302541.4785037/1‑94 (MQ=60)

                            ACGGCATCTGGAAAGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATG                                                                 <  SRR4302541.985851/94‑1 (MQ=60)

                             CTGCATCTTGAAGGTTTATTTACTGCCCGAAAGGGTATGGTGATTGAACCGCGCAACTTCCAGTTCCTTTATGATTTAACCCACCGTGTCATGC                                                                <  SRR4302541.1094749/94‑1 (MQ=60)

                             CGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGC                                                                >  SRR4302541.2915481/1‑94 (MQ=60)

                             CGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGC                                                                <  SRR4302541.8248645/94‑1 (MQ=60)

                              GGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCC                                                               <  SRR4302541.2523467/94‑1 (MQ=60)

                              GGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCACCCGTGTCATGCC                                                               >  SRR4302541.7206547/1‑94 (MQ=60)

                              GGC‑TCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTGCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCT                                                              <  SRR4302541.3069846/94‑1 (MQ=60)

                               GCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCT                                                              <  SRR4302541.3069845/94‑1 (MQ=60)

                               GCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCT                                                              >  SRR4302541.1708491/1‑94 (MQ=60)

                               GCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCT                                                              <  SRR4302541.3348751/94‑1 (MQ=60)

                                CATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTG                                                             >  SRR4302541.4580746/1‑94 (MQ=60)

                                CATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTG                                                             >  SRR4302541.4580747/1‑94 (MQ=60)

                                CATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTG                                                             >  SRR4302541.2089701/1‑94 (MQ=60)

                                CATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTG                                                             <  SRR4302541.8044680/94‑1 (MQ=60)

                                 ATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGA                                                            >  SRR4302541.6002364/1‑94 (MQ=60)

                                 ATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGA                                                            >  SRR4302541.6002363/1‑94 (MQ=60)

                                 ATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGA                                                            >  SRR4302541.5243955/1‑94 (MQ=60)

                                  TCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGAC                                                           >  SRR4302541.8346585/1‑94 (MQ=60)

                                  TCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGAC                                                           <  SRR4302541.6857197/94‑1 (MQ=60)

                                    TGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTG                                                         <  SRR4302541.1879665/94‑1 (MQ=60)

                                    TGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTG                                                         >  SRR4302541.7328593/1‑94 (MQ=60)

                                     GGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGG                                                        <  SRR4302541.1354544/94‑1 (MQ=60)

                                     GGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGG                                                        >  SRR4302541.5683647/1‑94 (MQ=60)

                                     GGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGG                                                        >  SRR4302541.8162587/1‑94 (MQ=60)

                                      GAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGG                                                       >  SRR4302541.1771582/1‑94 (MQ=60)

                                      GAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGG                                                       >  SRR4302541.4938566/1‑94 (MQ=60)

                                      GAAGGTTTATTTACTGCCGGAAAGGTGAT‑GTGATTGAACCGCGCAACTTCCAGTGCGTTTATGATTTAAACCACCGTGTCATGCCTGCCTGGGA                                                      >  SRR4302541.3365977/1‑94 (MQ=60)

                                       AAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGA                                                      >  SRR4302541.3279975/1‑94 (MQ=60)

                                       AAGGTTTATTTACCGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGA                                                      >  SRR4302541.2339608/1‑94 (MQ=60)

                                        AGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGAT                                                     <  SRR4302541.3896016/94‑1 (MQ=60)

                                         GGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATG                                                    <  SRR4302541.347527/94‑1 (MQ=60)

                                         GATTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATG                                                    <  SRR4302541.2191016/94‑1 (MQ=60)

                                          GTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGA                                                   <  SRR4302541.3520641/94‑1 (MQ=60)

                                            TTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATG                                                 >  SRR4302541.3324955/1‑94 (MQ=60)

                                            TTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATG                                                 >  SRR4302541.5321734/1‑94 (MQ=60)

                                            TTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATG                                                 >  SRR4302541.5321740/1‑94 (MQ=60)

                                            TTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATG                                                 <  SRR4302541.5713435/94‑1 (MQ=60)

                                            TTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATG                                                 <  SRR4302541.3951006/94‑1 (MQ=60)

                                             TATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGA                                                <  SRR4302541.4090853/94‑1 (MQ=60)

                                             TATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGA                                                >  SRR4302541.2047293/1‑94 (MQ=60)

                                              ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCACCTTCCAGTGCCTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               <  SRR4302541.1242070/94‑1 (MQ=60)

                                              ATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAG                                               <  SRR4302541.5697391/94‑1 (MQ=60)

                                               TTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTATCCCACCGTGTCATGCCTGACTGGGATGATGAGC                                              >  SRR4302541.8572714/1‑94 (MQ=60)

                                               TTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGC                                              >  SRR4302541.7797318/1‑94 (MQ=60)

                                               TTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGC                                              <  SRR4302541.2536633/94‑1 (MQ=60)

                                               TTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGC                                              <  SRR4302541.1951699/94‑1 (MQ=60)

                                                TTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCG                                             <  SRR4302541.3068582/94‑1 (MQ=60)

                                                TTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCG                                             <  SRR4302541.5288855/94‑1 (MQ=60)

                                                TTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCG                                             >  SRR4302541.7935773/1‑94 (MQ=60)

                                                 TACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCCCCGTGTCATGCCTGACTGGGATGATGAGCGC                                            <  SRR4302541.2038757/94‑1 (MQ=60)

                                                 TACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGC                                            >  SRR4302541.1410174/1‑94 (MQ=60)

                                                   CTGCCGGAAAGGTGATGGTGATTGAACGGCTCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGA                                          <  SRR4302541.6373776/94‑1 (MQ=60)

                                                   CTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGA                                          >  SRR4302541.8223342/1‑94 (MQ=60)

                                                    TGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT                                         >  SRR4302541.177351/1‑94 (MQ=60)

                                                     GCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATC                                        <  SRR4302541.3879909/94‑1 (MQ=60)

                                                      CCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCT                                       >  SRR4302541.677131/1‑94 (MQ=60)

                                                      CCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCT                                       >  SRR4302541.2066479/1‑94 (MQ=60)

                                                      CCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCT                                       >  SRR4302541.6700140/1‑94 (MQ=60)

                                                       CGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTC                                      >  SRR4302541.235000/1‑94 (MQ=60)

                                                       CGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTC                                      <  SRR4302541.6448167/94‑1 (MQ=60)

                                                        GGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCG                                     >  SRR4302541.8519286/1‑94 (MQ=60)

                                                        GGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCG                                     >  SRR4302541.4617355/1‑94 (MQ=60)

                                                        GGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCG                                     >  SRR4302541.1488773/1‑94 (MQ=60)

                                                         GAAAGGTGATGGTGATTGAACGGCTCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGT                                    <  SRR4302541.2624780/94‑1 (MQ=60)

                                                         GAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGTCTGGGATGATGAGCGCGATCTCGT                                    >  SRR4302541.7880132/1‑94 (MQ=60)

                                                           AAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTT                                  <  SRR4302541.8787630/94‑1 (MQ=60)

                                                           AAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTT                                  <  SRR4302541.6098356/94‑1 (MQ=60)

                                                           AAGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTT                                  <  SRR4302541.6098357/94‑1 (MQ=60)

                                                            AGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTC                                 <  SRR4302541.2522550/94‑1 (MQ=60)

                                                            AGGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTC                                 >  SRR4302541.6244183/1‑94 (MQ=60)

                                                             GGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCG                                <  SRR4302541.8782486/94‑1 (MQ=60)

                                                             GGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCG                                >  SRR4302541.7284983/1‑94 (MQ=60)

                                                             GGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCG                                <  SRR4302541.4695533/94‑1 (MQ=60)

                                                             GGTGATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCG                                >  SRR4302541.725174/1‑94 (MQ=60)

                                                             GGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCG                                <  SRR4302541.7177398/94‑1 (MQ=60)

                                                                 ATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAA                            >  SRR4302541.1394120/1‑94 (MQ=60)

                                                                 ATGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAA                            >  SRR4302541.2052291/1‑94 (MQ=60)

                                                                  TGGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAAC                           <  SRR4302541.8395938/94‑1 (MQ=60)

                                                                   GGTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACA                          <  SRR4302541.5775804/94‑1 (MQ=60)

                                                                    GTGATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAG                         >  SRR4302541.6546189/1‑94 (MQ=60)

                                                                      GATTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAA                       <  SRR4302541.3620331/94‑1 (MQ=60)

                                                                        TTGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGC                     <  SRR4302541.1015538/94‑1 (MQ=60)

                                                                         TGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCA                    <  SRR4302541.1803950/94‑1 (MQ=60)

                                                                         TGAACGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCA                    <  SRR4302541.6165094/94‑1 (MQ=60)

                                                                             CGGCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAA                <  SRR4302541.3964493/94‑1 (MQ=60)

                                                                               GCGCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATC              <  SRR4302541.5963891/94‑1 (MQ=60)

                                                                                 GCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCAT            <  SRR4302541.6585229/94‑1 (MQ=60)

                                                                                 GCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCAT            <  SRR4302541.6585228/94‑1 (MQ=60)

                                                                                 GCAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCAT            >  SRR4302541.5743736/1‑94 (MQ=60)

                                                                                 CCAACTTCCAGTGCATTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCAT            <  SRR4302541.7535736/94‑1 (MQ=60)

                                                                                  CAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATC           <  SRR4302541.4354833/94‑1 (MQ=60)

                                                                                  CAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATC           >  SRR4302541.8418186/1‑94 (MQ=60)

                                                                                  CAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATC           >  SRR4302541.7686032/1‑94 (MQ=60)

                                                                                  CAACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATC           <  SRR4302541.3293531/94‑1 (MQ=60)

                                                                                   AACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCA          <  SRR4302541.1713666/94‑1 (MQ=60)

                                                                                   AACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCA          <  SRR4302541.2102567/94‑1 (MQ=60)

                                                                                   AACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCA          <  SRR4302541.1175253/94‑1 (MQ=60)

                                                                                    ACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCAT         <  SRR4302541.4915950/94‑1 (MQ=60)

                                                                                    ACTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCAT         <  SRR4302541.4674571/94‑1 (MQ=60)

                                                                                     CTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATG        >  SRR4302541.6493269/1‑94 (MQ=60)

                                                                                     CTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATG        >  SRR4302541.8486817/1‑94 (MQ=60)

                                                                                     CTTCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATG        <  SRR4302541.51703/94‑1 (MQ=60)

                                                                                       TCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCT      <  SRR4302541.3187003/94‑1 (MQ=60)

                                                                                       TCCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCT      <  SRR4302541.4459928/94‑1 (MQ=60)

                                                                                        CCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG     >  SRR4302541.5471979/1‑94 (MQ=60)

                                                                                        CCAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTG     <  SRR4302541.6716573/94‑1 (MQ=60)

                                                                                         CAGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGG    <  SRR4302541.1697055/94‑1 (MQ=60)

                                                                                          AGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGA   >  SRR4302541.5337566/1‑94 (MQ=60)

                                                                                          AGTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGA   >  SRR4302541.2307977/1‑94 (MQ=60)

                                                                                           GTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  <  SRR4302541.3852715/94‑1 (MQ=60)

                                                                                           GTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  SRR4302541.3285930/1‑94 (MQ=60)

                                                                                           GTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  SRR4302541.1203538/1‑94 (MQ=60)

                                                                                           GTGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  SRR4302541.6869116/1‑94 (MQ=60)

GCGGCTGGTGGGAATGGAAGCCGCATAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGATCTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAT  >  NC_000913/969066‑969250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`