Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,038,386	T→C	L475P (CTG→CCG)	appC →	putative third cytochrome oxidase subunit I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,038,386	0	T	C	100.0%	814.1 / NA	236	L475P (CTG→CCG)	appC	putative third cytochrome oxidase subunit I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/117); total (119/117)

Only 100 of 238 total aligned reads displayed.

AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC  >  NC_000913/1038296‑1038475

aGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGa                                                                                         >  1:4996920/1‑93 (MQ=255)

 gTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGAt                                                                                        <  1:2506084/93‑1 (MQ=255)

   ttGGTCGTCAGCCGTGGGCGATACAGGACATCTTGCCGACATACTCAGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCa                                                                                      >  1:4098930/1‑93 (MQ=255)

    tGGGCGGCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCAt                                                                                     <  1:18978/93‑1 (MQ=255)

     ggTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATg                                                                                    <  1:3775510/93‑1 (MQ=255)

     ggTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCATTCTCACCGATCATg                                                                                    >  2:3971798/1‑93 (MQ=255)

       tcgtcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGAt                                                                                  <  2:4904024/93‑1 (MQ=255)

          tcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGt                                                                               >  1:4663018/1‑93 (MQ=255)

          tcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGt                                                                               <  1:4675739/93‑1 (MQ=255)

          tcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGt                                                                               <  2:4419321/93‑1 (MQ=255)

           cAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTa                                                                              >  1:2450487/1‑93 (MQ=255)

            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             >  2:3081128/1‑93 (MQ=255)

            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  2:2397953/93‑1 (MQ=255)

             gCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAgg                                                                            <  2:2674197/93‑1 (MQ=255)

             gCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAgg                                                                            <  2:5092822/93‑1 (MQ=255)

               cGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGc                                                                          >  1:2793578/1‑93 (MQ=255)

               cGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGc                                                                          <  2:4808745/93‑1 (MQ=255)

                 tGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCtt                                                                        <  2:5509518/93‑1 (MQ=255)

                 tGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCtt                                                                        >  2:3013781/1‑93 (MQ=255)

                   ggCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTa                                                                      >  2:1733268/1‑93 (MQ=255)

                      gATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTacac                                                                   <  2:4340703/93‑1 (MQ=255)

                      gATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTacac                                                                   >  1:2941935/1‑93 (MQ=255)

                       aTACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAcc                                                                  <  2:3502720/93‑1 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCATTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  1:1954529/93‑1 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  2:5251487/93‑1 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 >  1:4530872/1‑93 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 >  2:202984/1‑93 (MQ=255)

                         aCAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCt                                                                <  1:1539643/93‑1 (MQ=255)

                         aCAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCt                                                                >  2:2261804/1‑93 (MQ=255)

                          cAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTg                                                               <  2:3223413/93‑1 (MQ=255)

                           aGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGt                                                              <  1:5356526/93‑1 (MQ=255)

                           aGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGt                                                              >  2:2650624/1‑93 (MQ=255)

                           aGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGt                                                              >  2:4130434/1‑93 (MQ=255)

                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             >  2:712513/1‑93 (MQ=255)

                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             >  2:2789350/1‑93 (MQ=255)

                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             <  2:6212805/93‑1 (MQ=255)

                             gACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGGAGGGCTTTACACTCTGTTc                                                            >  1:5902437/1‑93 (MQ=255)

                              aCATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCt                                                           >  1:4865491/1‑93 (MQ=255)

                                aTCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTa                                                         >  2:1460994/1‑93 (MQ=255)

                                 tCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTaa                                                        <  1:4170733/93‑1 (MQ=255)

                                 tCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTaa                                                        >  1:3520801/1‑93 (MQ=255)

                                   ttACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATc                                                      >  1:4398004/1‑93 (MQ=255)

                                    tACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCg                                                     >  2:5857078/1‑93 (MQ=255)

                                     aCCGACATCCTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGc                                                    <  1:158882/93‑1 (MQ=255)

                                     aCCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGc                                                    >  1:6271711/1‑93 (MQ=255)

                                      ccGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGcc                                                   <  2:6289662/93‑1 (MQ=255)

                                        gACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGa                                                 <  2:5794090/93‑1 (MQ=255)

                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTc                                             >  2:782718/1‑93 (MQ=255)

                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTc                                             <  2:1322891/93‑1 (MQ=255)

                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTc                                             >  1:1327360/1‑93 (MQ=255)

                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTa                                           >  1:907658/1‑93 (MQ=255)

                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTa                                           <  2:1157564/93‑1 (MQ=255)

                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGAGCTTTACACCCTGTTCTTAATCGCCGACGTCTa                                           >  1:2084952/1‑93 (MQ=255)

                                               tCCGCGCACTCCGCTTTAAACACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAc                                          >  2:2594601/1‑93 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         >  2:2314372/1‑93 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  1:1133842/93‑1 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  1:1297012/93‑1 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  1:5191709/93‑1 (MQ=255)

                                                   cgcACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGa                                      <  2:1995407/93‑1 (MQ=255)

                                                     cACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATg                                    <  1:2413801/93‑1 (MQ=255)

                                                      aCTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGc                                   <  1:2853493/93‑1 (MQ=255)

                                                       cTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCa                                  >  2:1423408/1‑93 (MQ=255)

                                                        tCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAg                                 >  1:4793590/1‑93 (MQ=255)

                                                            cTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAat                             >  2:1794795/1‑93 (MQ=255)

                                                            cTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAat                             <  1:2148908/93‑1 (MQ=255)

                                                             tttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAATTCTACCTGATGCAGAAata                            <  1:6287376/93‑1 (MQ=255)

                                                              ttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAatat                           <  1:3355873/93‑1 (MQ=255)

                                                              ttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAatat                           >  1:651307/1‑93 (MQ=255)

                                                                aaCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGc                         <  1:548588/93‑1 (MQ=255)

                                                                aaCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGc                         >  1:4451424/1‑93 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        >  1:1045433/1‑93 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        <  2:3527083/93‑1 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        >  2:5188963/1‑93 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        <  1:726110/93‑1 (MQ=255)

                                                                  ccACAGGACAACTGGCTTTCTCACCGATCATGCTCGTAGGGCTTTACACCCTGTTCTTAATCGCCCAAGACTCGCTGATGCAGAAATATGccc                       >  1:5691416/1‑93 (MQ=255)

                                                                  ccACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGccc                       <  1:2099780/93‑1 (MQ=255)

                                                                   cacaGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCg                      >  2:5654944/1‑93 (MQ=255)

                                                                      aGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCt                   <  2:539785/93‑1 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  1:2276827/93‑1 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 >  1:3285887/1‑93 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  1:2580902/93‑1 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  2:1370764/93‑1 (MQ=255)

                                                                           aaCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGc              >  2:6394744/1‑93 (MQ=255)

                                                                            aCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGcc             >  1:5530500/1‑93 (MQ=255)

                                                                              tGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGa           <  1:3117212/93‑1 (MQ=255)

                                                                              tGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGa           >  1:4959362/1‑93 (MQ=255)

                                                                               ggCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAg          <  1:2740039/93‑1 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         <  2:3723184/93‑1 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         >  2:3096852/1‑93 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         <  1:1151611/93‑1 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         <  1:1218944/93‑1 (MQ=255)

                                                                                 cTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcg        <  1:618628/93‑1 (MQ=255)

                                                                                  tttCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcgc       <  1:3970397/93‑1 (MQ=255)

                                                                                  tttCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcgc       >  2:1231596/1‑93 (MQ=255)

                                                                                     ctcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGAt    <  1:5801324/93‑1 (MQ=255)

                                                                                     ctcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGAt    <  1:1691363/93‑1 (MQ=255)

                                                                                      tcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATg   >  1:5753698/1‑93 (MQ=255)

                                                                                      tcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATg   >  2:3799680/1‑93 (MQ=255)

                                                                                       cACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGc  <  1:1820751/93‑1 (MQ=255)

                                                                                       cACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGc  <  1:799154/93‑1 (MQ=255)

AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC  >  NC_000913/1038296‑1038475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  >  NC_000913/1038293‑1038479

tatagaTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACC                                                                                               <  SRR4302534.1808955/88‑1 (MQ=60)

CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACC                                                                                               >  SRR4302534.1055456/1‑94 (MQ=60)

CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACC                                                                                               <  SRR4302534.6529844/94‑1 (MQ=60)

 CGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCG                                                                                              >  SRR4302534.87645/1‑94 (MQ=60)

 CGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCG                                                                                              <  SRR4302534.3063254/94‑1 (MQ=60)

  GATTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGA                                                                                             <  SRR4302534.2858119/94‑1 (MQ=60)

  GAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGA                                                                                             >  SRR4302534.5132049/1‑94 (MQ=60)

    GTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATC                                                                                           <  SRR4302534.4233202/94‑1 (MQ=60)

    GTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATC                                                                                           <  SRR4302534.2572630/94‑1 (MQ=60)

     TTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTGCCGACATACTCAGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCA                                                                                          >  SRR4302534.4209128/1‑94 (MQ=60)

     TTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATGCTCCGCGCACTCCGCTTTAACCACAGGACACCTGGCTTTCTCACCGATCA                                                                                          <  SRR4302534.2818579/94‑1 (MQ=60)

       TGGGCGGCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATG                                                                                        <  SRR4302534.19479/94‑1 (MQ=60)

        GGTCGTCAGCCGTGGGCGATACAGGGCATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGA                                                                                       >  SRR4302534.6394456/1‑94 (MQ=60)

        GGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGA                                                                                       <  SRR4302534.3876880/94‑1 (MQ=60)

         GTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGAT                                                                                      <  SRR4302534.922717/94‑1 (MQ=60)

         GTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGAT                                                                                      >  SRR4302534.2600155/1‑94 (MQ=60)

           CGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    >  SRR4302534.503924/1‑94 (MQ=60)

           CGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    >  SRR4302534.3967816/1‑94 (MQ=60)

           CGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    <  SRR4302534.779715/94‑1 (MQ=60)

            GTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGT                                                                                   >  SRR4302534.4789624/1‑94 (MQ=60)

            GTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGT                                                                                   <  SRR4302534.4045819/94‑1 (MQ=60)

             TCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTA                                                                                  >  SRR4302534.57664/1‑94 (MQ=60)

             TCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTA                                                                                  <  SRR4302534.4802658/94‑1 (MQ=60)

             TCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTA                                                                                  >  SRR4302534.2515592/1‑94 (MQ=60)

             TCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACCCCGCTTTAACCACCGGACAATTGGCTTTCTCACCGATCATGATCGTG                                                                                  >  SRR4302534.5909837/1‑94 (MQ=60)

              CAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAG                                                                                 >  SRR4302534.3518639/1‑94 (MQ=60)

               AGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTACG                                                                                >  SRR4302534.2176644/1‑94 (MQ=60)

                 CCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGC                                                                              >  SRR4302534.2867056/1‑94 (MQ=60)

                  CGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCT                                                                             >  SRR4302534.1668411/1‑94 (MQ=60)

                  CGTGGGCGAAACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCT                                                                             >  SRR4302534.6453819/1‑94 (MQ=60)

                    TGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTT                                                                           <  SRR4302534.5158370/94‑1 (MQ=60)

                     GGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTA                                                                          <  SRR4302534.6129211/94‑1 (MQ=60)

                      GGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTAC                                                                         <  SRR4302534.2385613/94‑1 (MQ=60)

                       GCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACA                                                                        <  SRR4302534.4627361/94‑1 (MQ=60)

                        CGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAC                                                                       >  SRR4302534.3019131/1‑94 (MQ=60)

                         GATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACCCC                                                                      >  SRR4302534.1146533/1‑94 (MQ=60)

                          ATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCC                                                                     >  SRR4302534.4653646/1‑94 (MQ=60)

                           TACAGGACATCTTACCGACATACTCCGCGCATTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302534.2005684/94‑1 (MQ=60)

                            ACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTG                                                                   >  SRR4302534.4934008/1‑94 (MQ=60)

                            ACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTG                                                                   <  SRR4302534.5607570/94‑1 (MQ=60)

                            ACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTG                                                                   <  SRR4302534.1580005/94‑1 (MQ=60)

                              AGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTT                                                                 <  SRR4302534.5500925/94‑1 (MQ=60)

                              AGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTT                                                                 <  SRR4302534.2516544/94‑1 (MQ=60)

                              AGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTT                                                                 >  SRR4302534.3117222/1‑94 (MQ=60)

                               GGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGGAGGGCTTTACACTCTGTTC                                                                >  SRR4302534.6062693/1‑94 (MQ=60)

                                GACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCT                                                               >  SRR4302534.4997469/1‑94 (MQ=60)

                                GACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCT                                                               <  SRR4302534.1999543/94‑1 (MQ=60)

                                GACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCT                                                               >  SRR4302534.1944530/1‑94 (MQ=60)

                                GACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCT                                                               <  SRR4302534.6010471/94‑1 (MQ=60)

                                   ATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAA                                                            >  SRR4302534.3615505/1‑94 (MQ=60)

                                    TCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAAT                                                           >  SRR4302534.5108126/1‑94 (MQ=60)

                                    TCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAAT                                                           <  SRR4302534.4283395/94‑1 (MQ=60)

                                     CTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATC                                                          >  SRR4302534.4516666/1‑94 (MQ=60)

                                     CTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATC                                                          <  SRR4302534.1653056/94‑1 (MQ=60)

                                      TTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCG                                                         <  SRR4302534.2878125/94‑1 (MQ=60)

                                      TTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCG                                                         >  SRR4302534.1779479/1‑94 (MQ=60)

                                      TTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCG                                                         >  SRR4302534.1532378/1‑94 (MQ=60)

                                       TACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGC                                                        >  SRR4302534.1198492/1‑94 (MQ=60)

                                       TACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGC                                                        >  SRR4302534.6441514/1‑94 (MQ=60)

                                        ACCGACATCCTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCC                                                       <  SRR4302534.163041/94‑1 (MQ=60)

                                        ACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCC                                                       >  SRR4302534.5111292/1‑94 (MQ=60)

                                          CGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGA                                                     >  SRR4302534.4679521/1‑94 (MQ=60)

                                              ATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTC                                                 <  SRR4302534.4897624/94‑1 (MQ=60)

                                              ATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTC                                                 >  SRR4302534.1362351/1‑94 (MQ=60)

                                                ACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTA                                               >  SRR4302534.930721/1‑94 (MQ=60)

                                                ACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTA                                               <  SRR4302534.349996/94‑1 (MQ=60)

                                                ACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTA                                               <  SRR4302534.2760657/94‑1 (MQ=60)

                                                ACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGAGCTTTACACCCTGTTCTTAATCGCCGACGTCTA                                               >  SRR4302534.2139581/1‑94 (MQ=60)

                                                  TCCGCGCGCTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACC                                             <  SRR4302534.3168336/94‑1 (MQ=60)

                                                   CCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCT                                            >  SRR4302534.1976554/1‑94 (MQ=60)

                                                   CCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCT                                            <  SRR4302534.5331670/94‑1 (MQ=60)

                                                   CCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCT                                            <  SRR4302534.1163481/94‑1 (MQ=60)

                                                   CCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCT                                            <  SRR4302534.1331204/94‑1 (MQ=60)

                                                    CGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTG                                           >  SRR4302534.1175600/1‑94 (MQ=60)

                                                    CGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTG                                           <  SRR4302534.4398693/94‑1 (MQ=60)

                                                       GCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATG                                        <  SRR4302534.685564/94‑1 (MQ=60)

                                                        CACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGC                                       <  SRR4302534.2478001/94‑1 (MQ=60)

                                                         ACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCA                                      <  SRR4302534.2928449/94‑1 (MQ=60)

                                                          CTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAG                                     >  SRR4302534.4923743/1‑94 (MQ=60)

                                                           TCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGA                                    >  SRR4302534.2147777/1‑94 (MQ=60)

                                                           TCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGA                                    >  SRR4302534.3704693/1‑94 (MQ=60)

                                                            CCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAA                                   >  SRR4302534.2871097/1‑94 (MQ=60)

                                                             CGCTTTAACCACAGTACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTAAACCCTGTTCTTAATCGCCTAAGTCTACCTGATGCAGAAA                                  >  SRR4302534.5877646/1‑94 (MQ=60)

                                                              GCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAT                                 <  SRR4302534.4918650/94‑1 (MQ=60)

                                                              GCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAT                                 <  SRR4302534.1190030/94‑1 (MQ=60)

                                                              GCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAT                                 >  SRR4302534.1353481/1‑94 (MQ=60)

                                                               CTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATA                                <  SRR4302534.2205614/94‑1 (MQ=60)

                                                               CTTGAACCACAGGACAACTGACTTTCTCGCCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATA                                <  SRR4302534.479128/94‑1 (MQ=60)

                                                                TTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAATTCTACCTGATGCAGAAATAT                               <  SRR4302534.6457488/94‑1 (MQ=60)

                                                                TTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATAT                               <  SRR4302534.5737251/94‑1 (MQ=60)

                                                                TTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATAT                               >  SRR4302534.667126/1‑94 (MQ=60)

                                                                 TTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATG                              <  SRR4302534.3445746/94‑1 (MQ=60)

                                                                  TAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGC                             >  SRR4302534.5521564/1‑94 (MQ=60)

                                                                  TAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGC                             >  SRR4302534.4571746/1‑94 (MQ=60)

                                                                   AACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCC                            <  SRR4302534.562119/94‑1 (MQ=60)

                                                                   AACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCC                            >  SRR4302534.1072451/1‑94 (MQ=60)

                                                                    ACCACAGGACAACTGGCTTTCTCACCGATCATGCTCGTAGGGCTTTACACCCTGTTCTTAATCGCCCAAGACTCGCTGATGCAGAAATATGCCC                           >  SRR4302534.5845560/1‑94 (MQ=60)

                                                                    ACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCA                           <  SRR4302534.744035/94‑1 (MQ=60)

                                                                     CCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCG                          <  SRR4302534.2154889/94‑1 (MQ=60)

                                                                     CCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCG                          >  SRR4302534.4664363/1‑94 (MQ=60)

                                                                      CACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGT                         >  SRR4302534.2623082/1‑94 (MQ=60)

                                                                      CACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGT                         <  SRR4302534.1289845/94‑1 (MQ=60)

                                                                      CACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGT                         <  SRR4302534.3402283/94‑1 (MQ=60)

                                                                       ACAGGTCAACTGGCTTTCTCACCGACCATGATCTTACGGCTTTACACCCTGTTGTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTC                        <  SRR4302534.1741314/94‑1 (MQ=60)

                                                                       ACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTC                        <  SRR4302534.1384117/94‑1 (MQ=60)

                                                                       ACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTC                        >  SRR4302534.2199394/1‑94 (MQ=60)

                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      <  SRR4302534.4167539/94‑1 (MQ=60)

                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      <  SRR4302534.6491164/94‑1 (MQ=60)

                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      >  SRR4302534.1594356/1‑94 (MQ=60)

                                                                          GGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGG                     >  SRR4302534.3373491/1‑94 (MQ=60)

                                                                          GGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGG                     <  SRR4302534.6048361/94‑1 (MQ=60)

                                                                           GACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGG                    <  SRR4302534.2649247/94‑1 (MQ=60)

                                                                           GACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGG                    <  SRR4302534.4537458/94‑1 (MQ=60)

                                                                           GACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGG                    <  SRR4302534.2337243/94‑1 (MQ=60)

                                                                           GACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGCG                    <  SRR4302534.6369152/94‑1 (MQ=60)

                                                                            ACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGG                   <  SRR4302534.5668611/94‑1 (MQ=60)

                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 <  SRR4302534.4515165/94‑1 (MQ=60)

                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 >  SRR4302534.5679779/1‑94 (MQ=60)

                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 >  SRR4302534.694289/1‑94 (MQ=60)

                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 <  SRR4302534.2085420/94‑1 (MQ=60)

                                                                                CTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGA               >  SRR4302534.5093660/1‑94 (MQ=60)

                                                                                 TGGCTTTCTCACCGATCATGATCGTAGGGCTTTCCACCCTGATCTTAATCGCCGAAGTCTAACTGATGCAGAAATATGCCCGTCTGaagtcgag              >  SRR4302534.1066956/1‑86 (MQ=60)

                                                                                 TGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAG              <  SRR4302534.3199175/94‑1 (MQ=60)

                                                                                 TGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAG              <  SRR4302534.5332007/94‑1 (MQ=60)

                                                                                  GGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGC             <  SRR4302534.2812237/94‑1 (MQ=60)

                                                                                   GCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCG            <  SRR4302534.1251034/94‑1 (MQ=60)

                                                                                   GCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCG            <  SRR4302534.1181799/94‑1 (MQ=60)

                                                                                   GCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCG            <  SRR4302534.2389716/94‑1 (MQ=60)

                                                                                    CTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGC           <  SRR4302534.633651/94‑1 (MQ=60)

                                                                                    CTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGC           >  SRR4302534.2330255/1‑94 (MQ=60)

                                                                                     TTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCG          <  SRR4302534.4076669/94‑1 (MQ=60)

                                                                                     TTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCG          >  SRR4302534.3343603/1‑94 (MQ=60)

                                                                                        CTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATG       <  SRR4302534.2976642/94‑1 (MQ=60)

                                                                                        CTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATG       <  SRR4302534.5958757/94‑1 (MQ=60)

                                                                                        CTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATG       >  SRR4302534.5909745/1‑94 (MQ=60)

                                                                                        CTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATG       <  SRR4302534.1735325/94‑1 (MQ=60)

                                                                                        CTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATG       >  SRR4302534.2493695/1‑94 (MQ=60)

                                                                                          CACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCA     <  SRR4302534.819219/94‑1 (MQ=60)

                                                                                          CACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCA     <  SRR4302534.1868073/94‑1 (MQ=60)

                                                                                           ACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAG    <  SRR4302534.5523821/94‑1 (MQ=60)

                                                                                           ACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAG    >  SRR4302534.5242467/1‑94 (MQ=60)

                                                                                           ACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAG    >  SRR4302534.105796/1‑94 (MQ=60)

                                                                                            CCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGA   <  SRR4302534.327427/94‑1 (MQ=60)

                                                                                             CGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  <  SRR4302534.3174260/94‑1 (MQ=60)

CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  >  NC_000913/1038293‑1038479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`