Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,038,386 T→C L475P (CTG→CCG)  appC → putative third cytochrome oxidase subunit I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,038,3860TC99.6% 887.5 / ‑5.0 260L475P (CTG→CCG) appCputative third cytochrome oxidase subunit I
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (120/139);  total (121/139)
Fisher's exact test for biased strand distribution p-value = 4.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01

Only 100 of 266 total aligned reads displayed.

AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC  >  NC_000913/1038296‑1038475
                                                                                          |                                                                                         
 gTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGAt                                                                                        >  1:914067/1‑93 (MQ=255)
 gTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGAt                                                                                        <  2:1916960/93‑1 (MQ=255)
  tttGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATc                                                                                       <  1:2077917/93‑1 (MQ=255)
   ttGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCa                                                                                      <  1:3256180/93‑1 (MQ=255)
    tGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCAt                                                                                     >  2:604665/1‑93 (MQ=255)
     ggTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATg                                                                                    <  1:7880167/93‑1 (MQ=255)
      gtcgtcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAAACACAGGACAACTGGCTTTCTCACCGATTATGa                                                                                   >  2:5361803/1‑93 (MQ=255)
       tcgtcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTACTCACCGATCATGAt                                                                                  <  2:394164/93‑1 (MQ=255)
       tcgtcAGCCGTGAGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGAt                                                                                  <  2:8240171/93‑1 (MQ=255)
         gtcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCg                                                                                >  1:996626/1‑93 (MQ=255)
           cAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTa                                                                              <  1:7695347/93‑1 (MQ=255)
            aGCCGTGGGCGATACAGGCCATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  2:5475160/93‑1 (MQ=255)
            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  2:2783116/93‑1 (MQ=255)
            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  1:7452445/93‑1 (MQ=255)
            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  1:5349926/93‑1 (MQ=255)
            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  2:5823009/93‑1 (MQ=255)
            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             >  2:6417329/1‑93 (MQ=255)
            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  1:3079763/93‑1 (MQ=255)
             gCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAgg                                                                            <  2:8036599/93‑1 (MQ=255)
              ccGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAggg                                                                           <  2:8364335/93‑1 (MQ=255)
               cGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGc                                                                          <  2:5566065/93‑1 (MQ=255)
               cGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGc                                                                          <  1:5423249/93‑1 (MQ=255)
                gTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCt                                                                         >  2:1603645/1‑93 (MQ=255)
                 tGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCtt                                                                        >  1:3393960/1‑93 (MQ=255)
                   ggCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCttga                                                                      >  1:2423260/1‑91 (MQ=255)
                   ggCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTa                                                                      >  2:3778098/1‑93 (MQ=255)
                     cGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTaca                                                                    <  2:8259615/93‑1 (MQ=255)
                       aTACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAcc                                                                  >  2:7005314/1‑93 (MQ=255)
                       aTACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAcc                                                                  >  2:7678974/1‑93 (MQ=255)
                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  2:4232491/93‑1 (MQ=255)
                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  1:3323626/93‑1 (MQ=255)
                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 >  1:5506715/1‑93 (MQ=255)
                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  1:5818735/93‑1 (MQ=255)
                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  1:592517/93‑1 (MQ=255)
                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  2:2348735/93‑1 (MQ=255)
                          cAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTg                                                               <  1:8144868/93‑1 (MQ=255)
                          cAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTg                                                               <  1:7088092/93‑1 (MQ=255)
                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             >  2:1392786/1‑93 (MQ=255)
                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtc                                                             >  2:6429476/1‑92 (MQ=255)
                             gACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTc                                                            <  2:4840203/93‑1 (MQ=255)
                             gACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTc                                                            <  2:7309102/93‑1 (MQ=255)
                             gACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTc                                                            <  1:3937802/93‑1 (MQ=255)
                              aCATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCt                                                           <  1:6735221/93‑1 (MQ=255)
                              aCATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCt                                                           <  1:6782727/93‑1 (MQ=255)
                                 tCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTaa                                                        >  1:1039751/1‑93 (MQ=255)
                                  cTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAAt                                                       <  1:1442463/93‑1 (MQ=255)
                                   ttACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATc                                                      >  2:716185/1‑93 (MQ=255)
                                    tACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCg                                                     >  2:8549027/1‑93 (MQ=255)
                                     aCCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGc                                                    >  1:5150822/1‑93 (MQ=255)
                                     aCCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGc                                                    >  2:413842/1‑93 (MQ=255)
                                      ccGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGcc                                                   >  2:2915817/1‑93 (MQ=255)
                                      ccGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGcc                                                   <  1:5496642/93‑1 (MQ=255)
                                       cGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACTCTGTCCTTAATCGCCg                                                  >  1:6457095/1‑93 (MQ=255)
                                        gACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGa                                                 >  1:2348539/1‑93 (MQ=255)
                                         aCATACTCCTCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCGCCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGaa                                                <  2:6813935/93‑1 (MQ=255)
                                           aTACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGt                                              <  1:1957676/93‑1 (MQ=255)
                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATAGCCGAAGTc                                             >  1:4744714/1‑93 (MQ=255)
                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTa                                           <  2:4418615/93‑1 (MQ=255)
                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  2:2944682/93‑1 (MQ=255)
                                                 cgcgCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCt                                        <  1:4529223/93‑1 (MQ=255)
                                                  gcgcACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTg                                       >  2:2065868/1‑93 (MQ=255)
                                                  gcgcACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTg                                       <  1:3739205/93‑1 (MQ=255)
                                                   cgcACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGa                                      <  1:6016693/93‑1 (MQ=255)
                                                     cACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATg                                    >  1:1653837/1‑93 (MQ=255)
                                                      aCTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGc                                   >  2:5034866/1‑93 (MQ=255)
                                                      aCTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGc                                   <  1:1128023/93‑1 (MQ=255)
                                                        tCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAg                                 >  1:3457536/1‑93 (MQ=255)
                                                        tCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAg                                 >  1:4891643/1‑93 (MQ=255)
                                                            cTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAat                             >  1:622815/1‑93 (MQ=255)
                                                             tttAACCACAGGACAACTTCTTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATCCAGAAatc                            >  2:7195641/1‑92 (MQ=255)
                                                             tttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAata                            <  1:4284656/93‑1 (MQ=255)
                                                             tttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAata                            >  1:4727970/1‑93 (MQ=255)
                                                               tAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATg                          >  2:2648520/1‑93 (MQ=255)
                                                               tAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAAATg                          >  1:6536031/1‑93 (MQ=255)
                                                                aaCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGc                         <  1:2701331/93‑1 (MQ=255)
                                                                  ccACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGccc                       >  1:6350572/1‑93 (MQ=255)
                                                                     caGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGtt                    >  2:6766884/1‑92 (MQ=255)
                                                                     caGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTc                    <  2:8117635/93‑1 (MQ=255)
                                                                      aGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCt                   >  1:8388985/1‑93 (MQ=255)
                                                                      aGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCt                   >  2:7548802/1‑93 (MQ=255)
                                                                       ggACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTg                  >  1:8628533/1‑93 (MQ=255)
                                                                       ggACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTg                  >  1:7304350/1‑93 (MQ=255)
                                                                       ggACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTg                  >  1:7711439/1‑93 (MQ=255)
                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  1:288048/93‑1 (MQ=255)
                                                                         aCAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTggg                <  1:1622126/93‑1 (MQ=255)
                                                                          cAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGGCCGTCTgggg               <  2:1487947/93‑1 (MQ=255)
                                                                          cAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgggg               <  1:8307384/93‑1 (MQ=255)
                                                                           aaCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGc              <  2:5219877/93‑1 (MQ=255)
                                                                           aaCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGc              <  1:4342700/93‑1 (MQ=255)
                                                                           aaCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGc              <  2:1201188/93‑1 (MQ=255)
                                                                            aCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGTCCGTCTGGGGcc             >  2:3595656/1‑93 (MQ=255)
                                                                            aCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGcc             >  2:6634163/1‑93 (MQ=255)
                                                                              tGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGa           <  1:3828302/93‑1 (MQ=255)
                                                                                 cTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcg        <  1:7228270/93‑1 (MQ=255)
                                                                                 cTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAg          >  2:3057644/1‑91 (MQ=255)
                                                                                  tttCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcgc       >  1:4488650/1‑93 (MQ=255)
                                                                                     ctcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGAt    <  2:6267976/93‑1 (MQ=255)
                                                                                      tcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATg   <  2:2194194/93‑1 (MQ=255)
                                                                                      tcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATg   >  2:8578887/1‑93 (MQ=255)
                                                                                       cACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGc  <  2:3745768/93‑1 (MQ=255)
                                                                                          |                                                                                         
AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC  >  NC_000913/1038296‑1038475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  >  NC_000913/1038293‑1038479
                                                                                             |                                                                                             
CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACC                                                                                               >  SRR4302541.4443979/1‑94 (MQ=60)
CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACC                                                                                               <  SRR4302541.7888061/94‑1 (MQ=60)
 CGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCG                                                                                              >  SRR4302541.6819697/1‑94 (MQ=60)
   AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGAT                                                                                            >  SRR4302541.922597/1‑94 (MQ=60)
    GTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATC                                                                                           <  SRR4302541.608587/94‑1 (MQ=60)
    GTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATC                                                                                           <  SRR4302541.4294751/94‑1 (MQ=60)
     TTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCA                                                                                          <  SRR4302541.2098021/94‑1 (MQ=60)
      TTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCAT                                                                                         <  SRR4302541.3289060/94‑1 (MQ=60)
       TGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATG                                                                                        >  SRR4302541.3264370/1‑94 (MQ=60)
        GGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGA                                                                                       <  SRR4302541.5506056/94‑1 (MQ=60)
        GGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGA                                                                                       <  SRR4302541.7966785/94‑1 (MQ=60)
         GTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGAT                                                                                      >  SRR4302541.1642313/1‑94 (MQ=60)
           CGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    >  SRR4302541.1005901/1‑94 (MQ=60)
           CGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    <  SRR4302541.6694932/94‑1 (MQ=60)
           CGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    >  SRR4302541.7268056/1‑94 (MQ=60)
           CGCCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCG                                                                                    <  SRR4302541.5494379/94‑1 (MQ=60)
            GTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGT                                                                                   <  SRR4302541.5426511/94‑1 (MQ=60)
             TCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTA                                                                                  >  SRR4302541.3823583/1‑94 (MQ=60)
              CAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAG                                                                                 <  SRR4302541.7777185/94‑1 (MQ=60)
              CAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAG                                                                                 >  SRR4302541.4595536/1‑94 (MQ=60)
               AGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGG                                                                                <  SRR4302541.846183/94‑1 (MQ=60)
               AGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGG                                                                                <  SRR4302541.3111021/94‑1 (MQ=60)
               AGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGG                                                                                <  SRR4302541.7532039/94‑1 (MQ=60)
               AGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGG                                                                                <  SRR4302541.5404907/94‑1 (MQ=60)
                GCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGG                                                                               <  SRR4302541.3410619/94‑1 (MQ=60)
                GCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGG                                                                               <  SRR4302541.3901863/94‑1 (MQ=60)
                  CGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCT                                                                             >  SRR4302541.2372797/1‑94 (MQ=60)
                  CGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCT                                                                             <  SRR4302541.5478893/94‑1 (MQ=60)
                   GTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTT                                                                            >  SRR4302541.5078229/1‑94 (MQ=60)
                   GTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTT                                                                            <  SRR4302541.3795800/94‑1 (MQ=60)
                   GTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTT                                                                            >  SRR4302541.3427821/1‑94 (MQ=60)
                    TGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTT                                                                           >  SRR4302541.4358830/1‑94 (MQ=60)
                    TGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTT                                                                           <  SRR4302541.1665022/94‑1 (MQ=60)
                     GGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTA                                                                          >  SRR4302541.5558005/1‑94 (MQ=60)
                     GGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTA                                                                          <  SRR4302541.1212045/94‑1 (MQ=60)
                     GGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTGA                                                                          >  SRR4302541.2447189/1‑94 (MQ=60)
                      GGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTAC                                                                         >  SRR4302541.6176505/1‑94 (MQ=60)
                        CGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAC                                                                       <  SRR4302541.2324125/94‑1 (MQ=60)
                         GATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACC                                                                      <  SRR4302541.4785969/94‑1 (MQ=60)
                         GATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACC                                                                      >  SRR4302541.7655019/1‑94 (MQ=60)
                          ATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCC                                                                     >  SRR4302541.4359498/1‑94 (MQ=60)
                          ATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCC                                                                     >  SRR4302541.5563114/1‑94 (MQ=60)
                           TACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302541.6071209/94‑1 (MQ=60)
                           TACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302541.772669/94‑1 (MQ=60)
                           TACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302541.598098/94‑1 (MQ=60)
                           TACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302541.3356942/94‑1 (MQ=60)
                           TACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302541.3291608/94‑1 (MQ=60)
                           TACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCT                                                                    <  SRR4302541.5877874/94‑1 (MQ=60)
                            ACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGAGAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTG                                                                   >  SRR4302541.1285212/1‑94 (MQ=60)
                            ACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTG                                                                   <  SRR4302541.7499365/94‑1 (MQ=60)
                             CAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGT                                                                  <  SRR4302541.7163498/94‑1 (MQ=60)
                             CAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGT                                                                  <  SRR4302541.8233952/94‑1 (MQ=60)
                              AGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTT                                                                 >  SRR4302541.6444702/1‑94 (MQ=60)
                                GACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCT                                                               <  SRR4302541.3976996/94‑1 (MQ=60)
                                GACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCT                                                               <  SRR4302541.207234/94‑1 (MQ=60)
                                 ACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTT                                                              <  SRR4302541.6855269/94‑1 (MQ=60)
                                 ACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTT                                                              <  SRR4302541.6807115/94‑1 (MQ=60)
                                 ACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTT                                                              <  SRR4302541.343216/94‑1 (MQ=60)
                                  CATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTA                                                             >  SRR4302541.8477048/1‑94 (MQ=60)
                                   ATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAA                                                            >  SRR4302541.1049388/1‑94 (MQ=60)
                                   ATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAA                                                            <  SRR4302541.7491188/94‑1 (MQ=60)
                                    ACTTACCGCCATCCTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAAT                                                           <  SRR4302541.2531969/94‑1 (MQ=60)
                                     CTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATC                                                          <  SRR4302541.1456503/94‑1 (MQ=60)
                                      TTCCCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCG                                                         <  SRR4302541.6564187/94‑1 (MQ=60)
                                      TTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCG                                                         <  SRR4302541.3106448/94‑1 (MQ=60)
                                       TACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGC                                                        >  SRR4302541.5203806/1‑94 (MQ=60)
                                        ACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCC                                                       >  SRR4302541.6834658/1‑94 (MQ=60)
                                         CCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACTCTGTCCTTAATCGCCG                                                      >  SRR4302541.6522902/1‑94 (MQ=60)
                                         CCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCG                                                      <  SRR4302541.5552969/94‑1 (MQ=60)
                                          CGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGA                                                     >  SRR4302541.2371375/1‑94 (MQ=60)
                                          CGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGA                                                     <  SRR4302541.6536714/94‑1 (MQ=60)
                                           GACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAA                                                    >  SRR4302541.7290847/1‑94 (MQ=60)
                                           GACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAA                                                    >  SRR4302541.4396621/1‑94 (MQ=60)
                                            ACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAG                                                   <  SRR4302541.833594/94‑1 (MQ=60)
                                            ACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAG                                                   <  SRR4302541.4841735/94‑1 (MQ=60)
                                            ACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAG                                                   >  SRR4302541.4564285/1‑94 (MQ=60)
                                              ATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTC                                                 <  SRR4302541.1976553/94‑1 (MQ=60)
                                              ATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATAGCCGAAGTC                                                 >  SRR4302541.4793177/1‑94 (MQ=60)
                                                  TCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACC                                             <  SRR4302541.1784478/94‑1 (MQ=60)
                                                    CGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTG                                           <  SRR4302541.4574954/94‑1 (MQ=60)
                                                     GCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGA                                          <  SRR4302541.3776840/94‑1 (MQ=60)
                                                     GCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGA                                          >  SRR4302541.3986858/1‑94 (MQ=60)
                                                      CGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGAT                                         >  SRR4302541.5312189/1‑94 (MQ=60)
                                                      CGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGAT                                         <  SRR4302541.6078357/94‑1 (MQ=60)
                                                       GCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATG                                        >  SRR4302541.1670167/1‑94 (MQ=60)
                                                       GCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATG                                        <  SRR4302541.8171572/94‑1 (MQ=60)
                                                         ACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCA                                      <  SRR4302541.1138677/94‑1 (MQ=60)
                                                          CTCCGCTTTAACCGCAGGCCAACCGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCTCCGAAGTCTACCTCATGCCG                                     >  SRR4302541.7793167/1‑94 (MQ=60)
                                                          CTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAG                                     >  SRR4302541.3492080/1‑94 (MQ=60)
                                                          CTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAG                                     <  SRR4302541.5430431/94‑1 (MQ=60)
                                                          CTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAG                                     >  SRR4302541.4941553/1‑94 (MQ=60)
                                                              GCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAT                                 >  SRR4302541.628661/1‑94 (MQ=60)
                                                              CCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAT                                 <  SRR4302541.1907087/94‑1 (MQ=60)
                                                               CTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATA                                >  SRR4302541.5781079/1‑94 (MQ=60)
                                                               CTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATA                                >  SRR4302541.4776208/1‑94 (MQ=60)
                                                                TTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATAT                               <  SRR4302541.4327452/94‑1 (MQ=60)
                                                                 TTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATG                              <  SRR4302541.8549602/94‑1 (MQ=60)
                                                                 TTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAAAATG                              >  SRR4302541.6602775/1‑94 (MQ=60)
                                                                 TTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCCGAGGGCCTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATG                              >  SRR4302541.3462064/1‑94 (MQ=60)
                                                                  TAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGC                             <  SRR4302541.5890769/94‑1 (MQ=60)
                                                                  TAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGC                             >  SRR4302541.4881311/1‑94 (MQ=60)
                                                                   AACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCC                            <  SRR4302541.2728168/94‑1 (MQ=60)
                                                                    ACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCC                           >  SRR4302541.6415486/1‑94 (MQ=60)
                                                                    ACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCC                           <  SRR4302541.8730493/94‑1 (MQ=60)
                                                                    ACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCNACCTGATGCAGAAATATGCCC                           >  SRR4302541.6296906/1‑94 (MQ=60)
                                                                     CCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCG                          <  SRR4302541.953581/94‑1 (MQ=60)
                                                                     CCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCG                          <  SRR4302541.2251242/94‑1 (MQ=60)
                                                                      CACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGT                         >  SRR4302541.8229367/1‑94 (MQ=60)
                                                                        CAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCT                       <  SRR4302541.5941211/94‑1 (MQ=60)
                                                                        CAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCT                       >  SRR4302541.8479816/1‑94 (MQ=60)
                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      >  SRR4302541.8721010/1‑94 (MQ=60)
                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      >  SRR4302541.7793459/1‑94 (MQ=60)
                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      >  SRR4302541.7793460/1‑94 (MQ=60)
                                                                         AGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTG                      >  SRR4302541.7382325/1‑94 (MQ=60)
                                                                          GGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGG                     <  SRR4302541.3569558/94‑1 (MQ=60)
                                                                          GGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGG                     <  SRR4302541.5148739/94‑1 (MQ=60)
                                                                          GGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGG                     <  SRR4302541.7808273/94‑1 (MQ=60)
                                                                           GACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGG                    <  SRR4302541.290523/94‑1 (MQ=60)
                                                                            ACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACTCCCTGTTCTTAATCGCCTAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGG                   <  SRR4302541.4349807/94‑1 (MQ=60)
                                                                            ACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGG                   >  SRR4302541.6745163/1‑94 (MQ=60)
                                                                            ACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGG                   <  SRR4302541.2737336/94‑1 (MQ=60)
                                                                            ACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGG                   <  SRR4302541.1638212/94‑1 (MQ=60)
                                                                             CAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGC                  <  SRR4302541.8397691/94‑1 (MQ=60)
                                                                             CAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGC                  >  SRR4302541.2387918/1‑94 (MQ=60)
                                                                             CAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGC                  >  SRR4302541.110340/1‑94 (MQ=60)
                                                                             CAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGC                  >  SRR4302541.7123385/1‑94 (MQ=60)
                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 <  SRR4302541.3380389/94‑1 (MQ=60)
                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 <  SRR4302541.4386059/94‑1 (MQ=60)
                                                                              AACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCC                 <  SRR4302541.4738845/94‑1 (MQ=60)
                                                                               ACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCG                <  SRR4302541.1590712/94‑1 (MQ=60)
                                                                                CTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGA               <  SRR4302541.631529/94‑1 (MQ=60)
                                                                                 TGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAG              <  SRR4302541.3866868/94‑1 (MQ=60)
                                                                                 TGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAG              <  SRR4302541.4546072/94‑1 (MQ=60)
                                                                                 TGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAG              <  SRR4302541.571691/94‑1 (MQ=60)
                                                                                  TGCTTTCTCACCGATCATGATCGTAGTGCTTTACACCCTGTTCTTAATCGCCGAAGTCTGCCTGATGCAGAAATATGCCCGTCTGGGGCCGAGC             <  SRR4302541.3088618/94‑1 (MQ=60)
                                                                                   GCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCG            <  SRR4302541.2790008/94‑1 (MQ=60)
                                                                                   GCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCG            >  SRR4302541.8642530/1‑94 (MQ=60)
                                                                                    CTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGC           >  SRR4302541.7016570/1‑94 (MQ=60)
                                                                                    CTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGC           >  SRR4302541.4533892/1‑94 (MQ=60)
                                                                                    CTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGC           <  SRR4302541.7305384/94‑1 (MQ=60)
                                                                                     TTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCG          >  SRR4302541.3318572/1‑94 (MQ=60)
                                                                                       TCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGTGCGAT        >  SRR4302541.3588982/1‑94 (MQ=60)
                                                                                       TCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGAT        <  SRR4302541.7326962/94‑1 (MQ=60)
                                                                                         TCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC      >  SRR4302541.940672/1‑94 (MQ=60)
                                                                                          CACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCA     >  SRR4302541.585922/1‑94 (MQ=60)
                                                                                           ACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAG    <  SRR4302541.4893433/94‑1 (MQ=60)
                                                                                            CCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGA   >  SRR4302541.6823961/1‑94 (MQ=60)
                                                                                             CGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  >  SRR4302541.2123656/1‑94 (MQ=60)
                                                                                             CGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  <  SRR4302541.8310892/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCGAGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGCAGAG  >  NC_000913/1038293‑1038479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑