Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,086,330	T→C	Y247C (TAC→TGC)	ycdQ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,086,330	0	T	C	100.0%	763.8 / NA	220	Y247C (TAC→TGC)	ycdQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/110); total (110/110)

Only 100 of 225 total aligned reads displayed.

AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG  >  NC_000913/1086240‑1086419

 gTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAc                                                                                        >  2:5091095/1‑93 (MQ=255)

   gCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATTGTCACTGCAGCAAccc                                                                                      >  2:2890846/1‑93 (MQ=255)

   gCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAccc                                                                                      <  1:87664/93‑1 (MQ=255)

   gCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAccc                                                                                      <  2:63779/93‑1 (MQ=255)

     ccGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCAc                                                                                    <  2:176206/93‑1 (MQ=255)

      cGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACt                                                                                   <  1:1254931/93‑1 (MQ=255)

      cGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACt                                                                                   <  2:6007671/93‑1 (MQ=255)

         ggCTCGTAAAAAATCGTCCGCTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCt                                                                                <  2:5391112/93‑1 (MQ=255)

           cTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGc                                                                              >  1:416484/1‑93 (MQ=255)

            tCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGcc                                                                             <  2:5838485/93‑1 (MQ=255)

            tCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGcc                                                                             <  2:5931998/93‑1 (MQ=255)

            tCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGcc                                                                             >  1:2279284/1‑93 (MQ=255)

             cggaaaaaaTCTTTCACTGATTCAACTTCAGCTTCCAGCTAATATCAATAGCTTCGGTGATCATATCGTCTCTCCAGCAACCCACTTCGGCCa                                                                            <  1:1898110/90‑1 (MQ=255)

              gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           >  2:73929/1‑93 (MQ=255)

              gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           <  2:3663502/93‑1 (MQ=255)

              gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           <  1:3634534/93‑1 (MQ=255)

                 aaaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgc                                                                        >  2:117869/1‑93 (MQ=255)

                  aaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcg                                                                       <  1:780826/93‑1 (MQ=255)

                   aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      <  1:4635841/93‑1 (MQ=255)

                   aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      >  2:6082234/1‑93 (MQ=255)

                      tCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGc                                                                   >  1:2844772/1‑93 (MQ=255)

                      tCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGc                                                                   <  2:4955263/93‑1 (MQ=255)

                        gTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGCGCGCTGcga                                                                 >  2:6149418/1‑93 (MQ=255)

                          ccACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacg                                                               >  1:5767835/1‑93 (MQ=255)

                           cACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacga                                                              >  1:214818/1‑93 (MQ=255)

                           cACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacga                                                              >  1:3979455/1‑93 (MQ=255)

                              tGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAAt                                                           <  2:4684159/93‑1 (MQ=255)

                               gATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATg                                                          >  1:1514838/1‑93 (MQ=255)

                                aTTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  2:243373/93‑1 (MQ=255)

                                aTTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  2:5533711/93‑1 (MQ=255)

                                   cAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGc                                                      <  2:674268/93‑1 (MQ=255)

                                         cAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAac                                                <  2:3351392/93‑1 (MQ=255)

                                          aGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAaca                                               >  1:1373064/1‑93 (MQ=255)

                                          aGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAaca                                               >  1:2662387/1‑93 (MQ=255)

                                           gCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAacac                                              <  1:299021/93‑1 (MQ=255)

                                            cTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACAcc                                             <  1:1182580/93‑1 (MQ=255)

                                             ttCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCg                                            >  1:975465/1‑93 (MQ=255)

                                             ttCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCg                                            <  2:275398/93‑1 (MQ=255)

                                              tCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCgg                                           >  1:3619153/1‑93 (MQ=255)

                                               ccAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGa                                          >  1:3138026/1‑93 (MQ=255)

                                               ccAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGa                                          >  1:3191202/1‑93 (MQ=255)

                                                cAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGaa                                         <  1:4441995/93‑1 (MQ=255)

                                                 aGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGaaa                                        >  1:4998836/1‑93 (MQ=255)

                                                  gCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAAc                                       >  2:5752434/1‑93 (MQ=255)

                                                  gCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAAc                                       <  2:1439298/93‑1 (MQ=255)

                                                   cTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACg                                      >  2:156263/1‑93 (MQ=255)

                                                     aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACgga                                    >  2:4398609/1‑92 (MQ=255)

                                                     aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGt                                    <  1:3668629/93‑1 (MQ=255)

                                                     aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGt                                    <  2:109557/93‑1 (MQ=255)

                                                      atatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTa                                   >  1:3361238/1‑93 (MQ=255)

                                                       tatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTaa                                  >  2:3617959/1‑93 (MQ=255)

                                                        atcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGTCAATAACACCGGAAACGGTaaa                                 <  1:3175122/93‑1 (MQ=255)

                                                        atcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTaaa                                 >  1:3554142/1‑93 (MQ=255)

                                                          caatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATa                               <  1:4833513/93‑1 (MQ=255)

                                                          caatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATa                               <  1:1477584/93‑1 (MQ=255)

                                                           aatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAc                              >  1:4486416/1‑93 (MQ=255)

                                                            atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  1:1332295/1‑93 (MQ=255)

                                                            atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  2:4774286/1‑93 (MQ=255)

                                                            atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  1:5055866/1‑93 (MQ=255)

                                                             tatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGt                            >  1:5461405/1‑93 (MQ=255)

                                                             tatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGt                            >  1:6434538/1‑93 (MQ=255)

                                                              atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           >  2:1328064/1‑93 (MQ=255)

                                                              atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           <  1:6190191/93‑1 (MQ=255)

                                                               tcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGttt                          >  1:2590800/1‑93 (MQ=255)

                                                               tcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGttt                          >  1:3428779/1‑93 (MQ=255)

                                                                 ttCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTcc                        <  2:4410711/93‑1 (MQ=255)

                                                                 ttCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTcc                        >  1:4876325/1‑93 (MQ=255)

                                                                  tCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCa                       <  1:6056868/93‑1 (MQ=255)

                                                                  tCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCa                       >  2:3774871/1‑93 (MQ=255)

                                                                   cGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCAt                      <  2:251516/93‑1 (MQ=255)

                                                                      tGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGa                   >  2:2111187/1‑93 (MQ=255)

                                                                      tGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGa                   >  2:3460193/1‑93 (MQ=255)

                                                                      tGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGa                   <  2:5370731/93‑1 (MQ=255)

                                                                       gATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGAt                  <  1:1605150/93‑1 (MQ=255)

                                                                        aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 <  1:4552824/93‑1 (MQ=255)

                                                                        aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 >  2:4338156/1‑93 (MQ=255)

                                                                        aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 <  2:1794682/93‑1 (MQ=255)

                                                                         tCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAc                >  1:626914/1‑93 (MQ=255)

                                                                         tCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAc                >  2:4744512/1‑93 (MQ=255)

                                                                          cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               <  2:891488/93‑1 (MQ=255)

                                                                          cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               <  2:1925851/93‑1 (MQ=255)

                                                                           atatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGc              >  2:3506713/1‑93 (MQ=255)

                                                                           atatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGc              <  1:5731705/93‑1 (MQ=255)

                                                                            tatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCt             <  2:6442967/93‑1 (MQ=255)

                                                                            tatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCt             >  1:3236561/1‑93 (MQ=255)

                                                                             atCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTg            <  2:3917753/93‑1 (MQ=255)

                                                                             atCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTg            >  1:4708985/1‑93 (MQ=255)

                                                                              tCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTgg           >  1:5399252/1‑93 (MQ=255)

                                                                              tCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTgg           >  1:111734/1‑93 (MQ=255)

                                                                               cGTCACTCCAGCAACCCCCTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTggg          <  1:4291844/93‑1 (MQ=255)

                                                                                 tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        <  1:6160209/93‑1 (MQ=255)

                                                                                 tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        >  2:4870461/1‑93 (MQ=255)

                                                                                  cACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTc       >  2:4609285/1‑93 (MQ=255)

                                                                                  cACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTc       <  1:1078694/93‑1 (MQ=255)

                                                                                    cTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGc     >  1:1781252/1‑93 (MQ=255)

                                                                                     tCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCt    >  2:3275031/1‑93 (MQ=255)

                                                                                      ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGTCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   <  2:1306344/93‑1 (MQ=255)

                                                                                      ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGGAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   >  2:2281754/1‑93 (MQ=255)

                                                                                      ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   >  2:2835789/1‑93 (MQ=255)

                                                                                       cAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTg  <  1:3523452/93‑1 (MQ=255)

AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG  >  NC_000913/1086240‑1086419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGATCA  >  NC_000913/1086237‑1086423

CACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGC                                                                                               >  SRR4302534.827043/1‑94 (MQ=60)

 ACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCA                                                                                              >  SRR4302534.4028075/1‑94 (MQ=60)

 ACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCA                                                                                              >  SRR4302534.1626246/1‑94 (MQ=60)

   AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAC                                                                                            <  SRR4302534.2373950/94‑1 (MQ=60)

   AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAC                                                                                            >  SRR4302534.512747/1‑94 (MQ=60)

    gggcgctcggatgcTAAAAAAGCGTCCACTCATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCCCTCCAGCAACC                                                                                           <  SRR4302534.4668583/80‑1 (MQ=60)

      GCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCA                                                                                         <  SRR4302534.90006/94‑1 (MQ=60)

       CCCGTGGCTCGTAAAAAATTGTCCACTGATTGAACAGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCCACCCAC                                                                                        >  SRR4302534.5781857/1‑94 (MQ=60)

        CCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACT                                                                                       >  SRR4302534.5904164/1‑94 (MQ=60)

         CGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTT                                                                                      <  SRR4302534.1288004/94‑1 (MQ=60)

           TGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCT                                                                                    <  SRR4302534.3287915/94‑1 (MQ=60)

            GGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTG                                                                                   >  SRR4302534.1548094/1‑94 (MQ=60)

             GCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGC                                                                                  >  SRR4302534.427134/1‑94 (MQ=60)

             GCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGC                                                                                  >  SRR4302534.5428611/1‑94 (MQ=60)

              CTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCC                                                                                 >  SRR4302534.2339768/1‑94 (MQ=60)

                CGGAAAAAATCTTTCACTGATTCAACTTCAGCTTCCAGCTAATATCAATAGCTTCGGTGATCATATCGTCTCTCCAGCAACCCACTTCGGCCAG                                                                               <  SRR4302534.1947611/94‑1 (MQ=60)

                 GTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGG                                                                              <  SRR4302534.3732231/94‑1 (MQ=60)

                     AAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGC                                                                          <  SRR4302534.800298/94‑1 (MQ=60)

                     AAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGC                                                                          <  SRR4302534.2161735/94‑1 (MQ=60)

                      AAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCT                                                                         <  SRR4302534.3448426/94‑1 (MQ=60)

                      AAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCT                                                                         <  SRR4302534.4761630/94‑1 (MQ=60)

                        ATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGC                                                                       >  SRR4302534.2919517/1‑94 (MQ=60)

                           GTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGAC                                                                    <  SRR4302534.3667082/94‑1 (MQ=60)

                           GTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGAC                                                                    <  SRR4302534.2323054/94‑1 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                   >  SRR4302534.5924310/1‑94 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                   >  SRR4302534.3114299/1‑94 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                   <  SRR4302534.442226/94‑1 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                   <  SRR4302534.3747149/94‑1 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                   <  SRR4302534.3263483/94‑1 (MQ=60)

                             CCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGA                                                                  >  SRR4302534.220452/1‑94 (MQ=60)

                             CCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGA                                                                  >  SRR4302534.1118923/1‑94 (MQ=60)

                             CCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGA                                                                  >  SRR4302534.4085945/1‑94 (MQ=60)

                             CCACTGATTCAACTGCAGCTTCAAGCAAATATCAATATCTTGGGTGATCATATCGCCCCTCCAGCACCCCCCTTCTGCCGGGGCGCGGCGACGA                                                                  <  SRR4302534.5943007/94‑1 (MQ=42)

                              CACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAA                                                                 >  SRR4302534.1641588/1‑94 (MQ=60)

                                CTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAAT                                                               >  SRR4302534.5731932/1‑94 (MQ=60)

                                 TGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATG                                                              >  SRR4302534.1554642/1‑94 (MQ=60)

                                 TGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATG                                                              <  SRR4302534.465951/94‑1 (MQ=60)

                                  GATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGC                                                             >  SRR4302534.6350972/1‑94 (MQ=60)

                                  GATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGC                                                             >  SRR4302534.5061683/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGTGCTGCGACGAAATGCG                                                            <  SRR4302534.6641023/94‑1 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                            <  SRR4302534.6306885/94‑1 (MQ=60)

                                    TTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGG                                                           >  SRR4302534.1639389/1‑94 (MQ=60)

                                    TTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGG                                                           <  SRR4302534.1190077/94‑1 (MQ=60)

                                    TTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGG                                                           <  SRR4302534.4968992/94‑1 (MQ=60)

                                        ACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAAT                                                       <  SRR4302534.3728761/94‑1 (MQ=60)

                                          TGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAA                                                     <  SRR4302534.5523563/94‑1 (MQ=60)

                                            CAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACA                                                   >  SRR4302534.2732768/1‑94 (MQ=60)

                                            CAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACA                                                   >  SRR4302534.1409243/1‑94 (MQ=60)

                                             agcatccgaCTAATATCGATATCTTCGGTGATCATATCGTCACTCCACCCATCCACTTCTTCCAGCGCGCTGCGACGAAACGCGGCAATAACAC                                                  >  SRR4302534.3315830/10‑94 (MQ=48)

                                             AGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACAC                                                  >  SRR4302534.227197/1‑94 (MQ=60)

                                              GCTTCCAGCTAATATCAGTAGCTTCGGTAATCATATCGGCACTCCAGCAACCCTCTTCTGCCAGGGCCATGCGACGAAATGCGGCAATAACACC                                                 <  SRR4302534.1875374/94‑1 (MQ=60)

                                              GCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACC                                                 <  SRR4302534.306748/94‑1 (MQ=60)

                                               CTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCG                                                >  SRR4302534.1280717/1‑94 (MQ=60)

                                               CTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCG                                                <  SRR4302534.1213661/94‑1 (MQ=60)

                                               CTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCG                                                >  SRR4302534.1000340/1‑94 (MQ=60)

                                               CTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCG                                                <  SRR4302534.323040/94‑1 (MQ=60)

                                                TTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGG                                               >  SRR4302534.3716456/1‑94 (MQ=60)

                                                 TCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGGAATGCGGCAAGAACACCGGA                                              <  SRR4302534.6490389/94‑1 (MQ=60)

                                                 TCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGA                                              >  SRR4302534.3275701/1‑94 (MQ=60)

                                                 TCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGA                                              >  SRR4302534.3220552/1‑94 (MQ=60)

                                                 TCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGA                                              <  SRR4302534.5555345/94‑1 (MQ=60)

                                                   CAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAA                                            >  SRR4302534.5134000/1‑94 (MQ=60)

                                                   CAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAA                                            <  SRR4302534.4561989/94‑1 (MQ=60)

                                                    AGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAAC                                           <  SRR4302534.1435497/94‑1 (MQ=60)

                                                       TAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGT                                        <  SRR4302534.4071704/94‑1 (MQ=60)

                                                        AATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTA                                       >  SRR4302534.3451268/1‑94 (MQ=60)

                                                        AATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTA                                       <  SRR4302534.3767245/94‑1 (MQ=60)

                                                         ATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAA                                      <  SRR4302534.6595720/94‑1 (MQ=60)

                                                          TATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAA                                     >  SRR4302534.3649721/1‑94 (MQ=60)

                                                           ATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGTCAATAACACCGGAAACGGTAAAT                                    <  SRR4302534.3258929/94‑1 (MQ=60)

                                                           ATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAAT                                    >  SRR4302534.994088/1‑94 (MQ=60)

                                                            TCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATA                                   >  SRR4302534.897226/1‑94 (MQ=60)

                                                             CAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAC                                  <  SRR4302534.1516440/94‑1 (MQ=60)

                                                             CAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAC                                  <  SRR4302534.4964656/94‑1 (MQ=60)

                                                             CAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAC                                  >  SRR4302534.4607809/1‑94 (MQ=60)

                                                              AATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACG                                 >  SRR4302534.5192424/1‑94 (MQ=60)

                                                              AATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACG                                 >  SRR4302534.1367416/1‑94 (MQ=60)

                                                               ATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGT                                >  SRR4302534.6607983/1‑94 (MQ=60)

                                                               ATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGT                                >  SRR4302534.2868333/1‑94 (MQ=60)

                                                               ATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGT                                >  SRR4302534.5608601/1‑94 (MQ=60)

                                                                TATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTT                               <  SRR4302534.3063546/94‑1 (MQ=60)

                                                                TATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTT                               >  SRR4302534.362166/1‑94 (MQ=60)

                                                                 ATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTT                              >  SRR4302534.2659388/1‑94 (MQ=60)

                                                                 ATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTT                              <  SRR4302534.6358644/94‑1 (MQ=60)

                                                                 ATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTT                              >  SRR4302534.3520897/1‑94 (MQ=60)

                                                                  TCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGCAAATACGTTTC                             >  SRR4302534.3053348/1‑94 (MQ=60)

                                                                   CTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCC                            >  SRR4302534.5008592/1‑94 (MQ=60)

                                                                     TCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCAT                          <  SRR4302534.6221574/94‑1 (MQ=60)

                                                                     TCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCAT                          <  SRR4302534.4918730/94‑1 (MQ=60)

                                                                      CGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATA                         >  SRR4302534.4588909/1‑94 (MQ=60)

                                                                         TGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGAT                      <  SRR4302534.4124865/94‑1 (MQ=60)

                                                                          GATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATA                     >  SRR4302534.4569254/1‑94 (MQ=60)

                                                                          GATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATA                     <  SRR4302534.1647074/94‑1 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                    >  SRR4302534.6078064/1‑94 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                    >  SRR4302534.642115/1‑94 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                    <  SRR4302534.3620456/94‑1 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                    <  SRR4302534.4676240/94‑1 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                    <  SRR4302534.1327824/94‑1 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                    <  SRR4302534.4866115/94‑1 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCCCTGCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                 <  SRR4302534.1354615/94‑1 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                 >  SRR4302534.3322656/1‑94 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                 <  SRR4302534.4740130/94‑1 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                 <  SRR4302534.5887019/94‑1 (MQ=60)

                                                                               TATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTG                >  SRR4302534.2677321/1‑94 (MQ=60)

                                                                               TATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTG                >  SRR4302534.4836830/1‑94 (MQ=60)

                                                                               TATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTG                <  SRR4302534.3293122/94‑1 (MQ=60)

                                                                                ATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGG               >  SRR4302534.5544605/1‑94 (MQ=60)

                                                                                ATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGG               >  SRR4302534.6209432/1‑94 (MQ=60)

                                                                                ATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGG               >  SRR4302534.114717/1‑94 (MQ=60)

                                                                                ATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGG               >  SRR4302534.4048104/1‑94 (MQ=60)

                                                                                 TCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGG              >  SRR4302534.1805781/1‑94 (MQ=60)

                                                                                  CGTCACTCCAGCAACCCCCTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGT             <  SRR4302534.4408123/94‑1 (MQ=60)

                                                                                    TCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTC           >  SRR4302534.4809303/1‑94 (MQ=60)

                                                                                    TCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTC           <  SRR4302534.6327764/94‑1 (MQ=60)

                                                                                    TCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTC           <  SRR4302534.3506359/94‑1 (MQ=60)

                                                                                     CACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCG          <  SRR4302534.1106723/94‑1 (MQ=60)

                                                                                      ACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGC         >  SRR4302534.1827501/1‑94 (MQ=60)

                                                                                       CTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCT        <  SRR4302534.4353895/94‑1 (MQ=60)

                                                                                        TCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTT       >  SRR4302534.1397214/1‑94 (MQ=60)

                                                                                         CCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG      <  SRR4302534.6384199/94‑1 (MQ=60)

                                                                                          CAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGA     <  SRR4302534.3574918/94‑1 (MQ=60)

                                                                                          CAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGA     >  SRR4302534.3583340/1‑94 (MQ=60)

                                                                                          CAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGA     <  SRR4302534.3618216/94‑1 (MQ=60)

                                                                                             CAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGTTTCGCTTGATCA  <  SRR4302534.5422368/94‑1 (MQ=60)

                                                                                             CAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGATCA  <  SRR4302534.3231880/94‑1 (MQ=60)

CACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGATCA  >  NC_000913/1086237‑1086423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`