Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,086,330	T→C	Y247C (TAC→TGC)	ycdQ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,086,330	0	T	C	100.0%	893.7 / NA	258	Y247C (TAC→TGC)	ycdQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (121/137); total (121/137)

Only 100 of 265 total aligned reads displayed.

GTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG  >  NC_000913/1086241‑1086419

   cccGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCa                                                                                     >  1:4331386/1‑93 (MQ=255)

    ccGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCAc                                                                                    <  2:402983/93‑1 (MQ=255)

     cGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACt                                                                                   <  2:7560138/93‑1 (MQ=255)

       tgtcTCGTAAAAAATCGTCCAATGATTCAACTGCAGCTTCCAGCTAATATCAATACCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTc                                                                                 <  2:7413979/90‑1 (MQ=255)

        ggCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCt                                                                                <  1:3957683/93‑1 (MQ=255)

          cTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGc                                                                              <  1:7704767/93‑1 (MQ=255)

          cTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGc                                                                              >  1:3310088/1‑93 (MQ=255)

             gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCATCCCACTTCTGCCAg                                                                           >  2:3519879/1‑93 (MQ=255)

             gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           >  1:1044217/1‑93 (MQ=255)

             gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           <  2:1025968/93‑1 (MQ=255)

              tAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAgg                                                                          >  1:2022560/1‑93 (MQ=255)

              tAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAgg                                                                          >  1:808433/1‑93 (MQ=255)

               aaaaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAggg                                                                         >  1:1914319/1‑93 (MQ=255)

               aaaaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAggg                                                                         <  2:4713904/93‑1 (MQ=255)

                aaaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgc                                                                        <  1:6923887/93‑1 (MQ=255)

                 aaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcg                                                                       >  2:3236629/1‑93 (MQ=255)

                  aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      >  2:6185060/1‑93 (MQ=255)

                  aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      >  1:891361/1‑93 (MQ=255)

                  aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      <  2:7688423/93‑1 (MQ=255)

                   aaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCt                                                                     >  2:4327806/1‑93 (MQ=255)

                    atagTCCACTGCTTCACCTGCAGCTTCCAGCTAATATCAATAGCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTg                                                                    <  2:5888629/90‑1 (MQ=255)

                    aTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTg                                                                    >  2:3780152/1‑93 (MQ=255)

                      cGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcg                                                                  <  2:6607858/93‑1 (MQ=255)

                       gTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcga                                                                 <  2:144353/93‑1 (MQ=255)

                        tCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgac                                                                <  1:5924708/93‑1 (MQ=255)

                         ccACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacg                                                               >  2:784761/1‑93 (MQ=255)

                          cACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacga                                                              <  1:3704011/93‑1 (MQ=255)

                           aCTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGaa                                                             >  1:2919288/1‑93 (MQ=255)

                            cTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGaaa                                                            >  1:1163250/1‑93 (MQ=255)

                            cTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGaaa                                                            >  2:2460475/1‑93 (MQ=255)

                             tGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAAt                                                           >  1:748432/1‑93 (MQ=255)

                              gATTCAACTGCAGCTTCTAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATg                                                          >  1:5313993/1‑93 (MQ=255)

                              gATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATg                                                          <  2:6015877/93‑1 (MQ=255)

                               aTTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  1:1675162/93‑1 (MQ=255)

                               aTTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  2:121319/93‑1 (MQ=255)

                               aTTCAACTGCAGCTTCCAGCTAATAACAATATCTTCGGTTATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  2:749910/93‑1 (MQ=255)

                                ttCAACTGCAGCTTCCAGCTAATATCAATATCTTTGGTGATCATATCGTCACTCCAGCAACCCACTTCTTCCAGGGCGCTCCGACGAAATGCg                                                        >  2:2372613/1‑93 (MQ=255)

                                ttCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCg                                                        >  1:5613391/1‑93 (MQ=255)

                                ttCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCg                                                        >  1:5113679/1‑93 (MQ=255)

                                  cAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGc                                                      >  2:5846/1‑93 (MQ=255)

                                  cAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGc                                                      <  1:3052452/93‑1 (MQ=255)

                                   aaCTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACTAAATGCGGCa                                                     <  1:1109532/93‑1 (MQ=255)

                                   aaCTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCa                                                     >  2:6715064/1‑93 (MQ=255)

                                    aCTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCaa                                                    <  1:2609366/93‑1 (MQ=255)

                                     cTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAAt                                                   <  2:2015750/93‑1 (MQ=255)

                                        cAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAac                                                <  1:1476807/93‑1 (MQ=255)

                                        cAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAac                                                <  1:6363092/93‑1 (MQ=255)

                                          gCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAacac                                              >  1:732466/1‑93 (MQ=255)

                                          gCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAacac                                              >  1:8674513/1‑93 (MQ=255)

                                             tCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCgg                                           <  2:3072593/93‑1 (MQ=255)

                                             tCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCgg                                           <  2:916602/93‑1 (MQ=255)

                                               cAGCTAATATTAATATCTTCGGTGATCATATCTTCACTCCAGCAACCTACTACTGCCAGTGCGCTGCGACGAAATGCGGCAATAACACCGGaa                                         >  1:7782816/1‑93 (MQ=255)

                                               cAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGaa                                         >  2:5004330/1‑93 (MQ=255)

                                                aGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGaaa                                        >  1:3389471/1‑93 (MQ=255)

                                                 gCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAAc                                       <  2:3406514/93‑1 (MQ=255)

                                                   tAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACgg                                     >  1:4054219/1‑93 (MQ=255)

                                                    aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACgga                                    >  1:5495021/1‑92 (MQ=255)

                                                    aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGt                                    <  2:5395699/93‑1 (MQ=255)

                                                     atatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTa                                   <  1:6094322/93‑1 (MQ=255)

                                                        tcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTCAAt                                >  2:4586544/1‑93 (MQ=255)

                                                        tcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAAt                                >  2:2738841/1‑93 (MQ=255)

                                                         caatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATa                               >  2:721888/1‑93 (MQ=255)

                                                         caatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATa                               >  2:5161966/1‑93 (MQ=255)

                                                           atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  1:7426567/1‑93 (MQ=255)

                                                            tatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGt                            <  2:3201481/93‑1 (MQ=255)

                                                            tatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCAGCAATAACACCGGAAACGGTAAATACGt                            >  2:8586207/1‑93 (MQ=255)

                                                             atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           <  1:3766662/93‑1 (MQ=255)

                                                             atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           >  1:1573763/1‑93 (MQ=255)

                                                             atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           <  1:8583204/93‑1 (MQ=255)

                                                              tcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGttt                          <  1:3088703/93‑1 (MQ=255)

                                                               cTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTc                         <  2:8377022/93‑1 (MQ=255)

                                                               cTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTc                         >  1:6734387/1‑93 (MQ=255)

                                                               cTTCGGTGATCATATCCGCGCTCCAGCAACCCCCTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTc                         <  1:4534059/93‑1 (MQ=255)

                                                                ttCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTcc                        <  2:2586443/93‑1 (MQ=255)

                                                                ttCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTcc                        <  1:3858390/93‑1 (MQ=255)

                                                                    gTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAg                    <  1:1253076/93‑1 (MQ=255)

                                                                       aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 <  1:5131380/93‑1 (MQ=255)

                                                                       aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 >  1:5372746/1‑93 (MQ=255)

                                                                       aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 >  1:6247888/1‑93 (MQ=255)

                                                                         cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               >  2:6160776/1‑93 (MQ=255)

                                                                         cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               >  2:1294353/1‑93 (MQ=255)

                                                                         cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               >  2:5645969/1‑93 (MQ=255)

                                                                          atatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGc              <  1:2121326/93‑1 (MQ=255)

                                                                          atatCGTCACTACTGCAACCCGCTTCTGCCAGGGCGCTGCGACGAAATGCGGCACTAACACCGGAAACGGTAAATACGTTTCCATAGATACGc              <  1:4618580/93‑1 (MQ=255)

                                                                             tCGTCACTCCAGCAACCAACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTgg           >  2:8639891/1‑93 (MQ=255)

                                                                              cGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTggg          <  1:1708229/93‑1 (MQ=255)

                                                                               gTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGt         <  2:2928256/93‑1 (MQ=255)

                                                                               gTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGt         >  2:6801587/1‑93 (MQ=255)

                                                                               gTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGt         >  2:6978496/1‑93 (MQ=255)

                                                                                tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        >  1:3725428/1‑93 (MQ=255)

                                                                                tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        <  2:5683226/93‑1 (MQ=255)

                                                                                tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        <  2:1053496/93‑1 (MQ=255)

                                                                                 cACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTc       >  1:6304608/1‑93 (MQ=255)

                                                                                  aCTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCg      >  2:1708685/1‑93 (MQ=255)

                                                                                  aCTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCg      >  2:7966083/1‑93 (MQ=255)

                                                                                  aCTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCg      >  1:4908459/1‑93 (MQ=255)

                                                                                   cTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGc     >  1:7070757/1‑93 (MQ=255)

                                                                                    tCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCt    <  2:2329639/93‑1 (MQ=255)

                                                                                     ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   >  1:2525886/1‑93 (MQ=255)

                                                                                      cAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTg  <  2:6427055/93‑1 (MQ=255)

GTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG  >  NC_000913/1086241‑1086419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGATC  >  NC_000913/1086237‑1086422

CACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGC                                                                                              >  SRR4302541.8684607/1‑94 (MQ=60)

   AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAC                                                                                           >  SRR4302541.2128168/1‑94 (MQ=60)

   AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAC                                                                                           >  SRR4302541.8048731/1‑94 (MQ=60)

   AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCCGTGATCATATCGTCACTCCAGCAAC                                                                                           >  SRR4302541.1542506/1‑94 (MQ=60)

     GGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCC                                                                                         <  SRR4302541.3406375/94‑1 (MQ=60)

      GCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCA                                                                                        >  SRR4302541.4374634/1‑94 (MQ=60)

        CCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACT                                                                                      <  SRR4302541.5393351/94‑1 (MQ=60)

          GTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTC                                                                                    <  SRR4302541.6344379/94‑1 (MQ=60)

           TGGCTCGTAAAAAATCGTCCACTGATTCAACTGCCGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCT                                                                                   >  SRR4302541.7554092/1‑94 (MQ=60)

           TGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCT                                                                                   <  SRR4302541.8332031/94‑1 (MQ=60)

           TGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGATAATATCAATATCTTCGGTGATGATATCGTCACTCCAGCAACCCACTTCT                                                                                   <  SRR4302541.5609813/94‑1 (MQ=60)

            GGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTG                                                                                  <  SRR4302541.3997013/94‑1 (MQ=60)

             GCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGC                                                                                 >  SRR4302541.3343328/1‑94 (MQ=60)

              CTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCC                                                                                <  SRR4302541.7786709/94‑1 (MQ=60)

              CTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCC                                                                                <  SRR4302541.5296047/94‑1 (MQ=60)

               GCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCA                                                                               <  SRR4302541.3061280/94‑1 (MQ=60)

                CGTAAAAAATCGTCCACTGTTTCAATTGCAGCTTCCCGCTAATACCAATATCTTCGGAGATCATATCATCACTCCAGGAACCCACTTCTacgag                                                                              >  SRR4302541.8406347/1‑89 (MQ=60)

                CGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAG                                                                              >  SRR4302541.1053891/1‑94 (MQ=60)

                 GTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGG                                                                             >  SRR4302541.815844/1‑94 (MQ=60)

                 GTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGG                                                                             >  SRR4302541.2042118/1‑94 (MQ=60)

                 GTAAAAAATCGTCCAATGAGTCAACTGCGGCTTCCAGCTAAGATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGG                                                                             <  SRR4302541.2366937/94‑1 (MQ=60)

                  TAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGG                                                                            >  SRR4302541.1932725/1‑94 (MQ=60)

                   AAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGC                                                                           <  SRR4302541.7814400/94‑1 (MQ=60)

                   AAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGC                                                                           <  SRR4302541.3347436/94‑1 (MQ=60)

                    AAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCG                                                                          <  SRR4302541.6997781/94‑1 (MQ=60)

                    AAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCG                                                                          >  SRR4302541.414228/1‑94 (MQ=60)

                     AAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGC                                                                         >  SRR4302541.899550/1‑94 (MQ=60)

                      aagtcgtcccctgttcaAACTGCAACTTCCAGCCACTATCAATATCTTCCGTGATCATTTCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCT                                                                        <  SRR4302541.3858991/77‑1 (MQ=58)

                      AAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCT                                                                        <  SRR4302541.5060951/94‑1 (MQ=60)

                      AAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCT                                                                        <  SRR4302541.7948995/94‑1 (MQ=60)

                        ATCGTCCACTTATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGC                                                                      <  SRR4302541.7458511/94‑1 (MQ=60)

                        ATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGC                                                                      <  SRR4302541.1158471/94‑1 (MQ=60)

                           GTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCCGCAACCCACTTCTGCCAGGGCGCTGCGAC                                                                   >  SRR4302541.6349552/1‑94 (MQ=60)

                           GTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGAC                                                                   <  SRR4302541.3167607/94‑1 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                  >  SRR4302541.8777020/1‑94 (MQ=60)

                            TCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACG                                                                  <  SRR4302541.5985043/94‑1 (MQ=60)

                              CACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAA                                                                >  SRR4302541.2948646/1‑94 (MQ=60)

                              CACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAA                                                                <  SRR4302541.3741420/94‑1 (MQ=60)

                               ACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAA                                                               >  SRR4302541.1174421/1‑94 (MQ=60)

                                CTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAAT                                                              >  SRR4302541.755514/1‑94 (MQ=60)

                                CTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGATGATCATATCGCCACTCCAGCAACCCACTTCGGCCAGGGCGCTGCGACGAAAT                                                              <  SRR4302541.375588/94‑1 (MQ=60)

                                 TGATTCAACTGCAGCTTCTAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATG                                                             >  SRR4302541.5368697/1‑94 (MQ=60)

                                 TGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATG                                                             >  SRR4302541.3005927/1‑94 (MQ=60)

                                  GATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCCGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGCGCGCTGCGACGAAATGC                                                            >  SRR4302541.3776131/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           >  SRR4302541.5670851/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           <  SRR4302541.1691657/94‑1 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           >  SRR4302541.5166207/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           >  SRR4302541.5166208/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           >  SRR4302541.1074455/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           >  SRR4302541.8849250/1‑94 (MQ=60)

                                   ATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCG                                                           <  SRR4302541.8551944/94‑1 (MQ=60)

                                     TCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGC                                                         <  SRR4302541.1142808/94‑1 (MQ=60)

                                      CAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCA                                                        <  SRR4302541.5259162/94‑1 (MQ=60)

                                      CAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCA                                                        <  SRR4302541.6964043/94‑1 (MQ=60)

                                      CAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCA                                                        <  SRR4302541.3083351/94‑1 (MQ=60)

                                      CAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCA                                                        <  SRR4302541.246402/94‑1 (MQ=60)

                                       AACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACTAAATGCGGCAA                                                       <  SRR4302541.1119953/94‑1 (MQ=60)

                                        ACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAAT                                                      <  SRR4302541.2902624/94‑1 (MQ=60)

                                        ACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAAT                                                      <  SRR4302541.2635460/94‑1 (MQ=60)

                                            CAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACA                                                  <  SRR4302541.1491302/94‑1 (MQ=60)

                                            CAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACA                                                  <  SRR4302541.4221215/94‑1 (MQ=60)

                                            CAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACA                                                  <  SRR4302541.6428156/94‑1 (MQ=60)

                                             AGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACAC                                                 >  SRR4302541.739420/1‑94 (MQ=60)

                                             AGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACAC                                                 >  SRR4302541.8767338/1‑94 (MQ=60)

                                             AGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACAC                                                 <  SRR4302541.1441628/94‑1 (MQ=60)

                                               CTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCG                                               >  SRR4302541.3840377/1‑94 (MQ=60)

                                                TTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGG                                              <  SRR4302541.2598183/94‑1 (MQ=60)

                                                TTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGG                                              <  SRR4302541.6263569/94‑1 (MQ=60)

                                                  CCAGCTAATATTAATATCTTCGGTGATCATATCTTCACTCCAGCAACCTACTACTGCCAGTGCGCTGCGACGAAATGCGGCAATAACACCGGAA                                            >  SRR4302541.7865642/1‑94 (MQ=60)

                                                   CAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAA                                           >  SRR4302541.3423277/1‑94 (MQ=60)

                                                     GCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACG                                         <  SRR4302541.946761/94‑1 (MQ=60)

                                                      CTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGG                                        >  SRR4302541.4094220/1‑94 (MQ=60)

                                                      CTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGG                                        >  SRR4302541.4862541/1‑94 (MQ=60)

                                                       TAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGT                                       >  SRR4302541.3952988/1‑94 (MQ=60)

                                                       TAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGT                                       >  SRR4302541.1711509/1‑94 (MQ=60)

                                                       TAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGA                                       >  SRR4302541.5551327/1‑94 (MQ=60)

                                                       TAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGCAAACGGA                                       >  SRR4302541.5551328/1‑94 (MQ=60)

                                                        AATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTA                                      <  SRR4302541.4036093/94‑1 (MQ=60)

                                                         ATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAA                                     <  SRR4302541.4568320/94‑1 (MQ=60)

                                                         ATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAA                                     <  SRR4302541.4568318/94‑1 (MQ=60)

                                                         ATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAA                                     <  SRR4302541.6156535/94‑1 (MQ=60)

                                                          TATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAA                                    >  SRR4302541.6482700/1‑94 (MQ=60)

                                                          TATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAA                                    <  SRR4302541.7603860/94‑1 (MQ=60)

                                                           ATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAAT                                   >  SRR4302541.6068985/1‑94 (MQ=60)

                                                           ATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAAT                                   <  SRR4302541.6656255/94‑1 (MQ=60)

                                                             CAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAC                                 >  SRR4302541.6815031/1‑94 (MQ=60)

                                                             CAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAC                                 >  SRR4302541.2026637/1‑94 (MQ=60)

                                                              AATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACG                                >  SRR4302541.7505969/1‑94 (MQ=60)

                                                              AATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACG                                <  SRR4302541.5520284/94‑1 (MQ=60)

                                                               ATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGT                               >  SRR4302541.1296372/1‑94 (MQ=60)

                                                               ATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGT                               >  SRR4302541.59264/1‑94 (MQ=60)

                                                               ATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGT                               <  SRR4302541.3281626/94‑1 (MQ=60)

                                                                TATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTT                              >  SRR4302541.1589505/1‑94 (MQ=60)

                                                                 ATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTT                             <  SRR4302541.3804493/94‑1 (MQ=60)

                                                                 ATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTT                             <  SRR4302541.8675341/94‑1 (MQ=60)

                                                                  TCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTC                            >  SRR4302541.5385334/1‑94 (MQ=60)

                                                                  TCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTC                            >  SRR4302541.6806275/1‑94 (MQ=60)

                                                                  TCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTC                            <  SRR4302541.7725639/94‑1 (MQ=60)

                                                                  TCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTC                            <  SRR4302541.3120033/94‑1 (MQ=60)

                                                                   CTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAACTACGTTTCC                           >  SRR4302541.6234388/1‑94 (MQ=60)

                                                                   CTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCC                           >  SRR4302541.1714208/1‑94 (MQ=60)

                                                                   CTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCC                           <  SRR4302541.4618428/94‑1 (MQ=60)

                                                                   CTTCGGTGATCATATCCGCGCTCCAGCAACCCCCTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCC                           <  SRR4302541.4579865/94‑1 (MQ=60)

                                                                    TTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCA                          <  SRR4302541.3897205/94‑1 (MQ=60)

                                                                    TTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCA                          <  SRR4302541.702128/94‑1 (MQ=60)

                                                                     TCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCAT                         >  SRR4302541.3479574/1‑94 (MQ=60)

                                                                      CGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATA                        >  SRR4302541.3100023/1‑94 (MQ=60)

                                                                       GGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAATTACGTTTCCATAT                       >  SRR4302541.3741760/1‑94 (MQ=60)

                                                                        GTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGA                      >  SRR4302541.7519677/1‑94 (MQ=60)

                                                                        GTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGA                      <  SRR4302541.1265505/94‑1 (MQ=60)

                                                                          GATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATA                    >  SRR4302541.6311715/1‑94 (MQ=60)

                                                                          GATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATA                    >  SRR4302541.5427899/1‑94 (MQ=60)

                                                                           ATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAC                   <  SRR4302541.5184140/94‑1 (MQ=60)

                                                                             CATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGC                 >  SRR4302541.3958390/1‑94 (MQ=60)

                                                                             CATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGC                 >  SRR4302541.7342841/1‑94 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATCCGTTTCCATAGATACGCT                <  SRR4302541.4665529/94‑1 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                <  SRR4302541.2141857/94‑1 (MQ=60)

                                                                              ATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                >  SRR4302541.120508/1‑94 (MQ=60)

                                                                              ATATCGTCACTACTGCAACCCGCTTCTGCCAGGGCGCTGCGACGAAATGCGGCACTAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                <  SRR4302541.4665527/94‑1 (MQ=60)

                                                                              ATAACGTCCCTCCAGCAACCCACTCCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCT                <  SRR4302541.1737983/94‑1 (MQ=60)

                                                                                ATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGG              >  SRR4302541.971015/1‑94 (MQ=60)

                                                                                ATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGG              >  SRR4302541.1893913/1‑94 (MQ=60)

                                                                                  CGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGT            <  SRR4302541.1724952/94‑1 (MQ=60)

                                                                                   GTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTT           >  SRR4302541.3762966/1‑94 (MQ=60)

                                                                                   GTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTT           >  SRR4302541.8729914/1‑94 (MQ=60)

                                                                                    TCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTC          <  SRR4302541.3777366/94‑1 (MQ=60)

                                                                                    TCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTC          <  SRR4302541.7246427/94‑1 (MQ=60)

                                                                                    TCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTC          >  SRR4302541.6369054/1‑94 (MQ=60)

                                                                                     CACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCG         >  SRR4302541.4958539/1‑94 (MQ=60)

                                                                                     CACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCG         <  SRR4302541.637305/94‑1 (MQ=60)

                                                                                      ACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGCTACGCTGGGTTCGC        >  SRR4302541.5054536/1‑94 (MQ=60)

                                                                                      ACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGC        >  SRR4302541.7145950/1‑94 (MQ=60)

                                                                                      ACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAAAACCGGAAACGGTAAATACGTTTCCATAGATACGCTTGGTTCGT        >  SRR4302541.1522659/1‑94 (MQ=60)

                                                                                       CTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCT       >  SRR4302541.2045692/1‑94 (MQ=60)

                                                                                        TCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTT      >  SRR4302541.2551285/1‑94 (MQ=60)

                                                                                         CCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG     <  SRR4302541.5770968/94‑1 (MQ=60)

                                                                                         CCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG     <  SRR4302541.1667520/94‑1 (MQ=60)

                                                                                          CAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGA    <  SRR4302541.2783928/94‑1 (MQ=60)

                                                                                          CAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGA    >  SRR4302541.4553120/1‑94 (MQ=60)

                                                                                           AGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGAT   >  SRR4302541.1137720/1‑94 (MQ=60)

                                                                                            GCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGCTACGCTGGGTTCGCTTGATC  <  SRR4302541.7912669/94‑1 (MQ=60)

                                                                                            GCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGATC  >  SRR4302541.5721971/1‑94 (MQ=60)

CACAGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTGATC  >  NC_000913/1086237‑1086422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`