Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,143,101	T→C	M164V (ATG→GTG)	rne ←	RNase E

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,143,101	0	T	C	100.0%	632.2 / NA	183	M164V (ATG→GTG)	rne	RNase E
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/72); total (111/72)

Only 100 of 186 total aligned reads displayed.

TGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCATGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCG  >  NC_000913/1143011‑1143190

tGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGc                                                                                         >  2:3115873/1‑93 (MQ=255)

tGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGc                                                                                         >  2:134765/1‑93 (MQ=255)

tGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGc                                                                                         <  1:1698171/93‑1 (MQ=255)

 ggCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGcc                                                                                        <  2:1010308/93‑1 (MQ=255)

    ttCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTc                                                                                     <  2:3748164/93‑1 (MQ=255)

     tCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTcc                                                                                    >  2:3775495/1‑93 (MQ=255)

     tCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTcc                                                                                    <  1:4840480/93‑1 (MQ=255)

      cccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCg                                                                                   <  1:4463739/93‑1 (MQ=255)

       ccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCgg                                                                                  <  1:2303716/93‑1 (MQ=255)

       ccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCgg                                                                                  >  2:6224394/1‑93 (MQ=255)

       ccAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCgg                                                                                  >  2:482040/1‑93 (MQ=255)

        cAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGc                                                                                 >  2:3688797/1‑93 (MQ=255)

         aGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCa                                                                                >  2:1649967/1‑93 (MQ=255)

         aGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCa                                                                                >  2:5883335/1‑93 (MQ=255)

         aGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCa                                                                                <  2:4677450/93‑1 (MQ=255)

          gtgtTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAg                                                                               >  2:1744595/1‑93 (MQ=255)

          gtgtTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAg                                                                               >  2:3937531/1‑93 (MQ=255)

           tgtTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGt                                                                              >  2:300097/1‑93 (MQ=255)

             tttCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTc                                                                            >  1:5691630/1‑93 (MQ=255)

             tttCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTc                                                                            <  1:1645796/93‑1 (MQ=255)

              ttCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCa                                                                           <  1:2572700/93‑1 (MQ=255)

                cAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAg                                                                         >  2:306863/1‑93 (MQ=255)

                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       >  2:4246284/1‑93 (MQ=255)

                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       <  2:4762198/93‑1 (MQ=255)

                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       >  2:3223618/1‑93 (MQ=255)

                  gACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGc                                                                       >  2:1203483/1‑93 (MQ=255)

                   aCGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCt                                                                      >  1:2553645/1‑93 (MQ=255)

                    cGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAATGCtt                                                                     <  1:5616400/93‑1 (MQ=255)

                    cGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCtt                                                                     >  1:4720751/1‑93 (MQ=255)

                     ggAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTg                                                                    >  1:5707662/1‑93 (MQ=255)

                     ggAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGCGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAACGCTTg                                                                    >  1:5899181/1‑93 (MQ=255)

                      gAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGc                                                                   >  2:2206865/1‑93 (MQ=255)

                      gAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGc                                                                   >  1:1957063/1‑93 (MQ=255)

                      gAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGc                                                                   >  2:2555497/1‑93 (MQ=255)

                       aaGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGcc                                                                  <  1:1058331/93‑1 (MQ=255)

                        aGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCa                                                                 >  1:16306/1‑93 (MQ=255)

                        aGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCa                                                                 >  1:1043772/1‑93 (MQ=255)

                         gCTTAAATCCCATTGCAGCGCCTCATCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                <  2:5657967/93‑1 (MQ=255)

                         gCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                <  1:4436059/93‑1 (MQ=255)

                         gCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                >  2:3327748/1‑93 (MQ=255)

                         gCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAg                                                                >  1:1380215/1‑93 (MQ=255)

                          cTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGt                                                               >  2:4383376/1‑93 (MQ=255)

                          cTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGt                                                               >  1:4809774/1‑93 (MQ=255)

                          cTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGt                                                               <  1:881998/93‑1 (MQ=255)

                            tAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGc                                                             <  1:4954546/93‑1 (MQ=255)

                            tAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGc                                                             <  2:643848/93‑1 (MQ=255)

                             aaaTCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGct                                                            <  2:5334924/93‑1 (MQ=255)

                              aaTCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGctt                                                           >  2:1772445/1‑93 (MQ=255)

                               aTCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGcttc                                                          >  1:1160607/1‑93 (MQ=255)

                                 cccATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGcttctt                                                        <  2:6204934/93‑1 (MQ=255)

                                  ccATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCttt                                                       >  1:5380173/1‑93 (MQ=255)

                                  ccATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCttt                                                       >  2:530374/1‑93 (MQ=255)

                                   cATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCtttt                                                      <  2:1991630/93‑1 (MQ=255)

                                    aTTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTa                                                     >  1:3809729/1‑93 (MQ=255)

                                     ttGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTaa                                                    >  2:1251985/1‑93 (MQ=255)

                                     ttGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTaa                                                    >  2:5479205/1‑93 (MQ=255)

                                       gCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAAtt                                                  <  1:2097752/93‑1 (MQ=255)

                                        cAGCGCCTCAGCAGATTTGCCGACGCCATCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTc                                                 >  2:4120904/1‑93 (MQ=255)

                                        cAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTc                                                 >  1:675694/1‑93 (MQ=255)

                                         aGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCg                                                >  2:5760121/1‑93 (MQ=255)

                                          gcgcCTCCGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCgg                                               >  1:5218360/1‑93 (MQ=255)

                                          gcgcCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCgg                                               >  1:1749678/1‑93 (MQ=255)

                                           cgcCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGt                                              <  2:1114048/93‑1 (MQ=255)

                                            gcCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTa                                             >  1:45391/1‑93 (MQ=255)

                                             ccTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAc                                            <  1:2983093/93‑1 (MQ=255)

                                             ccTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAc                                            >  2:5171062/1‑93 (MQ=255)

                                             ccTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAc                                            <  2:3811446/93‑1 (MQ=255)

                                              cTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACg                                           <  2:1936203/93‑1 (MQ=255)

                                               tCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACgg                                          <  2:5184543/93‑1 (MQ=255)

                                                 agcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGgtc                                        >  2:2686934/1‑93 (MQ=255)

                                                 agcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGgtc                                        <  1:226024/93‑1 (MQ=255)

                                                  gcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGgtcg                                       >  1:2903615/1‑93 (MQ=255)

                                                  gcagATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACAgtcg                                       >  2:836061/1‑93 (MQ=255)

                                                     gATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGtcgtcg                                    >  1:3814247/1‑93 (MQ=255)

                                                     gATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGtcgtcg                                    >  1:3042929/1‑93 (MQ=255)

                                                      aTTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGc                                   <  2:2337169/93‑1 (MQ=255)

                                                       tttGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGGTTCTTTTAATTCGGTACGGTCGTCGcc                                  >  1:1238745/1‑93 (MQ=255)

                                                       tttGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGcc                                  <  2:743135/93‑1 (MQ=255)

                                                        ttGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCt                                 <  1:4037408/93‑1 (MQ=255)

                                                              aCGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATa                           >  1:5947506/1‑93 (MQ=255)

                                                               cGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATAc                          <  2:3579553/93‑1 (MQ=255)

                                                               cGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATAc                          >  2:5966269/1‑93 (MQ=255)

                                                                gCCAGCGGTGCGCACGATAATCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACg                         >  2:2646593/1‑93 (MQ=255)

                                                                gCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACg                         <  2:4958725/93‑1 (MQ=255)

                                                                gCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACg                         <  2:6093978/93‑1 (MQ=255)

                                                                 ccAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACgg                        >  2:2978630/1‑93 (MQ=255)

                                                                  cAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCACGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCCTCGATACCGc                       >  2:4594392/1‑93 (MQ=255)

                                                                    gCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCga                     >  1:3942783/1‑93 (MQ=255)

                                                                     cGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCgag                    >  1:3378361/1‑93 (MQ=255)

                                                                      ggTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCgaga                   >  1:1522273/1‑93 (MQ=255)

                                                                       gTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGaa                  >  2:4070002/1‑93 (MQ=255)

                                                                            cACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTACTTCGGTTCGGTCGTCGCCTTAGATACGGCGAGAAATGcc             >  1:4731668/1‑93 (MQ=255)

                                                                              cGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCAc           <  1:5078330/93‑1 (MQ=255)

                                                                                aTAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCAccc         >  1:5115389/1‑93 (MQ=255)

                                                                                 tAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcg        <  2:5815231/93‑1 (MQ=255)

                                                                                 tAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcg        <  2:5080022/93‑1 (MQ=255)

                                                                                    gCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcgcgc     >  2:1490072/1‑93 (MQ=255)

                                                                                      cccACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcgcgcgc   >  1:349515/1‑93 (MQ=255)

                                                                                      cccACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCcgcgcgc   >  2:244061/1‑93 (MQ=255)

                                                                                       ccACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTAGATACGGCGAGAAATGCCACCcgcgcgcg  >  1:6351548/1‑93 (MQ=255)

TGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCATGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCG  >  NC_000913/1143011‑1143190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCATGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCGGGTT  >  NC_000913/1143009‑1143194

GATGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACG                                                                                              <  SRR4302534.1644121/94‑1 (MQ=60)

  TGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCC                                                                                            >  SRR4302534.2356621/1‑94 (MQ=60)

  TGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCC                                                                                            <  SRR4302534.1742293/94‑1 (MQ=60)

    GCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTT                                                                                          <  SRR4302534.2479243/94‑1 (MQ=60)

       TCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCG                                                                                       <  SRR4302534.4971775/94‑1 (MQ=60)

        CCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGG                                                                                      <  SRR4302534.4584436/94‑1 (MQ=60)

         CCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGC                                                                                     <  SRR4302534.2364862/94‑1 (MQ=60)

         CCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGC                                                                                     <  SRR4302534.4031037/94‑1 (MQ=60)

          CAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCA                                                                                    <  SRR4302534.5803892/94‑1 (MQ=60)

           AGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAG                                                                                   >  SRR4302534.4643713/1‑94 (MQ=60)

           AGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAG                                                                                   <  SRR4302534.3788066/94‑1 (MQ=60)

              GTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTC                                                                                <  SRR4302534.1685914/94‑1 (MQ=60)

              GTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTC                                                                                >  SRR4302534.5845784/1‑94 (MQ=60)

               TTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCA                                                                               <  SRR4302534.4941759/94‑1 (MQ=60)

               TTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCA                                                                               <  SRR4302534.1688693/94‑1 (MQ=60)

                TTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAA                                                                              <  SRR4302534.2640869/94‑1 (MQ=60)

                  CAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGG                                                                            >  SRR4302534.133856/1‑94 (MQ=60)

                   AGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGC                                                                           >  SRR4302534.1776742/1‑94 (MQ=60)

                    GACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCT                                                                          >  SRR4302534.2621341/1‑94 (MQ=60)

                     ACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTT                                                                         >  SRR4302534.4848954/1‑94 (MQ=60)

                      CGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAATGCTTG                                                                        <  SRR4302534.5768375/94‑1 (MQ=60)

                      CGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTG                                                                        >  SRR4302534.5862283/1‑94 (MQ=60)

                      CGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGCGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAACGCTTG                                                                        >  SRR4302534.6059353/1‑94 (MQ=60)

                       GGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGC                                                                       >  SRR4302534.2008278/1‑94 (MQ=60)

                         AAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCA                                                                     <  SRR4302534.1085746/94‑1 (MQ=60)

                         AAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCA                                                                     >  SRR4302534.16739/1‑94 (MQ=60)

                         AAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCA                                                                     >  SRR4302534.1070725/1‑94 (MQ=60)

                          AGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAG                                                                    >  SRR4302534.1416560/1‑94 (MQ=60)

                           GCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGT                                                                   >  SRR4302534.4940342/1‑94 (MQ=60)

                           GCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGT                                                                   <  SRR4302534.4555844/94‑1 (MQ=60)

                            CTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTG                                                                  <  SRR4302534.904303/94‑1 (MQ=60)

                              TAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCT                                                                <  SRR4302534.5088733/94‑1 (MQ=60)

                                AATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTC                                                              >  SRR4302534.1191063/1‑94 (MQ=60)

                                AATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTC                                                              >  SRR4302534.2915998/1‑94 (MQ=60)

                                AATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTC                                                              >  SRR4302534.6020344/1‑94 (MQ=60)

                                   CCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTT                                                           >  SRR4302534.5525117/1‑94 (MQ=60)

                                    CCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTT                                                          >  SRR4302534.5219999/1‑94 (MQ=60)

                                    CCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTT                                                          >  SRR4302534.4562518/1‑94 (MQ=60)

                                     CATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTA                                                         >  SRR4302534.3912024/1‑94 (MQ=60)

                                         GCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTC                                                     >  SRR4302534.692173/1‑94 (MQ=60)

                                         GCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTC                                                     <  SRR4302534.2152791/94‑1 (MQ=60)

                                           AGCGCCTCCGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGG                                                   >  SRR4302534.5359212/1‑94 (MQ=60)

                                           AGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGG                                                   <  SRR4302534.4780563/94‑1 (MQ=60)

                                           AGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGG                                                   >  SRR4302534.5609290/1‑94 (MQ=60)

                                           AGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGG                                                   >  SRR4302534.1795096/1‑94 (MQ=60)

                                            GCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGT                                                  <  SRR4302534.1439286/94‑1 (MQ=60)

                                             CGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTA                                                 >  SRR4302534.46602/1‑94 (MQ=60)

                                              GCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTAC                                                >  SRR4302534.5124848/1‑94 (MQ=60)

                                               CCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACG                                               <  SRR4302534.3061133/94‑1 (MQ=60)

                                                 TCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGT                                             >  SRR4302534.3532240/1‑94 (MQ=60)

                                                   AGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCG                                           <  SRR4302534.231926/94‑1 (MQ=60)

                                                   AGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCG                                           >  SRR4302534.2979822/1‑94 (MQ=60)

                                                    GCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGT                                          <  SRR4302534.5050533/94‑1 (MQ=60)

                                                    GCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGT                                          >  SRR4302534.1918363/1‑94 (MQ=60)

                                                      AGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCG                                        >  SRR4302534.3916692/1‑94 (MQ=60)

                                                      AGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCG                                        >  SRR4302534.3122742/1‑94 (MQ=60)

                                                        ATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGGTTCTTTTAATTCGGTACGGTCGTCGCC                                      >  SRR4302534.1271393/1‑94 (MQ=60)

                                                        ATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCC                                      >  SRR4302534.1653979/1‑94 (MQ=60)

                                                         TTTGCCGACGCGAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCT                                     <  SRR4302534.4887485/94‑1 (MQ=60)

                                                         TTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCT                                     <  SRR4302534.212839/94‑1 (MQ=60)

                                                          TTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTT                                    >  SRR4302534.2257130/1‑94 (MQ=60)

                                                          TTGCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTT                                    <  SRR4302534.4145651/94‑1 (MQ=60)

                                                            GCCGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCG                                  <  SRR4302534.5861160/94‑1 (MQ=60)

                                                              CGACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGAT                                >  SRR4302534.3001369/1‑94 (MQ=60)

                                                               GACGCCAGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATA                               >  SRR4302534.6109001/1‑94 (MQ=60)

                                                                 cgccagagtcGCGCACGATAATCCCCCCGCCTTCCGTCAGTTAAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACG                             <  SRR4302534.5333740/84‑1 (MQ=60)

                                                                     AGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGA                         >  SRR4302534.4048371/1‑94 (MQ=60)

                                                                     AGCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGA                         >  SRR4302534.6365497/1‑94 (MQ=60)

                                                                      GCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAG                        <  SRR4302534.952020/94‑1 (MQ=60)

                                                                      GCGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAG                        >  SRR4302534.3468918/1‑94 (MQ=60)

                                                                       CGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGA                       >  SRR4302534.1562240/1‑94 (MQ=60)

                                                                       CGGTGCGCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTCCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGA                       <  SRR4302534.6059703/94‑1 (MQ=60)

                                                                           GCGCACGATAAGCCGCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATG                   <  SRR4302534.4050884/94‑1 (MQ=60)

                                                                             GCACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTACTTCGGTTCGGTCGTCGCCTTAGATACGGCGAGAAATGCC                 >  SRR4302534.4860157/1‑94 (MQ=60)

                                                                               ACGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCAC               >  SRR4302534.3363152/1‑94 (MQ=60)

                                                                                CGATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACC              <  SRR4302534.5215414/94‑1 (MQ=60)

                                                                                 GATAAGCCCCGCGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCC             <  SRR4302534.308570/94‑1 (MQ=60)

                                                                                 GATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCC             >  SRR4302534.5253440/1‑94 (MQ=60)

                                                                                  ATACGCCTCACGCCTTCGGGCAGTTCAAGGCTTGCTGGTCCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCG            <  SRR4302534.1620062/94‑1 (MQ=60)

                                                                                  ATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCG            <  SRR4302534.4526127/94‑1 (MQ=60)

                                                                                  ATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCG            >  SRR4302534.1238432/1‑94 (MQ=60)

                                                                                  ATAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCG            <  SRR4302534.802626/94‑1 (MQ=60)

                                                                                   TAAGCCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGC           >  SRR4302534.1138423/1‑94 (MQ=60)

                                                                                       CCCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGC       >  SRR4302534.358472/1‑94 (MQ=60)

                                                                                        CCCACGCCTTCCGGCAGTTCAAGGCTTTCCAGTTCTTGTTTTAATTCGGTACGGTCGTCGCCATCGATACGGCGAGCAAAGCCAGCCGCGCGCG      >  SRR4302534.4419406/1‑94 (MQ=60)

                                                                                        CCCACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTAGATACGGCGAGAAATGCCACCCGCGCGCG      >  SRR4302534.6523069/1‑94 (MQ=60)

                                                                                           ACGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCGGGT   >  SRR4302534.3740088/1‑94 (MQ=60)

                                                                                            CGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCGGGTT  <  SRR4302534.6206577/94‑1 (MQ=60)

GATGGCTTCCCAGTGTTTCAGACGGAAGCTTAAATCCCATTGCAGCGCCTCAGCAGATTTGCCGACGCCAGCGGTGCGCACGATAAGCCCCATGCCTTCCGGCAGTTCAAGGCTTGCCAGTGCTTCTTTTAATTCGGTACGGTCGTCGCCTTCGATACGGCGAGAAATGCCACCCGCGCGCGGGTT  >  NC_000913/1143009‑1143194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`