Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,202,871	A→G	E131E (GAA→GAG)	ymfL →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,202,871	0	A	G	100.0%	797.6 / NA	228	E131E (GAA→GAG)	ymfL	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (120/108); total (120/108)

Only 100 of 232 total aligned reads displayed.

CGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTG  >  NC_000913/1202781‑1202960

cGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCCAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGcc                                                                                         >  1:2843629/1‑93 (MQ=255)

 gATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCg                                                                                        >  2:4219093/1‑93 (MQ=255)

   tatTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCa                                                                                      >  2:6078924/1‑93 (MQ=255)

    atTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCAt                                                                                     <  1:517319/93‑1 (MQ=255)

     ttAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATg                                                                                    <  1:5707149/93‑1 (MQ=255)

     ttAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATg                                                                                    <  1:2108763/93‑1 (MQ=255)

        aCCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATgaga                                                                                 <  2:3980264/93‑1 (MQ=255)

         ccAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaa                                                                                >  1:4570951/1‑93 (MQ=255)

         ccAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaa                                                                                <  1:5983208/93‑1 (MQ=255)

          cAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaag                                                                               <  2:3202196/93‑1 (MQ=255)

          cAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaag                                                                               <  2:1482488/93‑1 (MQ=255)

          cAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaag                                                                               >  1:2318762/1‑93 (MQ=255)

          cAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaag                                                                               <  1:1625063/93‑1 (MQ=255)

           aGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaaga                                                                              >  2:3385875/1‑93 (MQ=255)

              gTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGGCGCATGAGAAGACAg                                                                           >  1:4700772/1‑93 (MQ=255)

              gTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAg                                                                           <  2:1293887/93‑1 (MQ=255)

                 tgctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCaa                                                                        >  2:4389649/1‑93 (MQ=255)

                 tgctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCaa                                                                        <  1:5023474/93‑1 (MQ=255)

                   ctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAtt                                                                      <  1:2622295/93‑1 (MQ=255)

                   ctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAtt                                                                      <  2:4625130/93‑1 (MQ=255)

                    tgGAAGTCATTGAACAGATCGGCGGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAGAGCAATTa                                                                     >  1:2862893/1‑93 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                    <  1:2647629/93‑1 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                    <  2:1376221/93‑1 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGGTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                    >  2:4051714/1‑93 (MQ=255)

                      gAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAac                                                                   >  1:645288/1‑93 (MQ=255)

                      gAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAac                                                                   >  2:4309725/1‑93 (MQ=255)

                        aGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAacga                                                                 >  2:1570113/1‑93 (MQ=255)

                          tCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAacgacg                                                               <  2:663083/93‑1 (MQ=255)

                           cATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAcgacga                                                              <  2:5104587/93‑1 (MQ=255)

                            aTTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAg                                                             >  2:1341125/1‑93 (MQ=255)

                             ttGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGc                                                            <  2:1102830/93‑1 (MQ=255)

                             ttGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGc                                                            >  2:2954221/1‑93 (MQ=255)

                             ttGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGc                                                            <  1:4542968/93‑1 (MQ=255)

                              tGAACATATCGGCAGTTATTCAAAACAGATTCGTGCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCt                                                           <  2:5007841/93‑1 (MQ=255)

                              tGAACAGAGCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCt                                                           <  1:5664635/93‑1 (MQ=255)

                               gaccAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTg                                                          <  2:492689/90‑1 (MQ=255)

                                aaCAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGt                                                         >  1:4779381/1‑93 (MQ=255)

                                 aCAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTa                                                        >  1:4881803/1‑93 (MQ=255)

                                    gATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtct                                                     >  2:308863/1‑93 (MQ=255)

                                    gATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtct                                                     >  1:3792190/1‑93 (MQ=255)

                                    gATCGGCAGTTATTAAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtct                                                     >  1:2214574/1‑93 (MQ=255)

                                     aTCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctc                                                    <  2:3817748/93‑1 (MQ=255)

                                      tCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctct                                                   >  2:5069230/1‑93 (MQ=255)

                                      tCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctct                                                   <  2:1684310/93‑1 (MQ=255)

                                       cGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctctc                                                  <  2:5260836/93‑1 (MQ=255)

                                         gCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCaa                                                >  1:4014265/1‑93 (MQ=255)

                                         gCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCaa                                                >  1:3899134/1‑93 (MQ=255)

                                         gCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCaa                                                >  1:1286175/1‑93 (MQ=255)

                                          cAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAt                                               <  1:1918940/93‑1 (MQ=255)

                                           aGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAtt                                              >  2:2754171/1‑93 (MQ=255)

                                           aGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAtt                                              >  2:3124754/1‑93 (MQ=255)

                                            gTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAttt                                             >  1:4919910/1‑93 (MQ=255)

                                            gTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAttt                                             >  2:2177815/1‑93 (MQ=255)

                                            gTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAttt                                             >  2:5920725/1‑93 (MQ=255)

                                             ttATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTc                                            <  2:6290717/93‑1 (MQ=255)

                                              tATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCg                                           >  1:6233940/1‑93 (MQ=255)

                                                ttCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGaa                                         >  2:4652819/1‑93 (MQ=255)

                                                  cAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGc                                       <  1:793605/93‑1 (MQ=255)

                                                  cAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGc                                       <  1:3098013/93‑1 (MQ=255)

                                                   aaaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCt                                      >  2:3847577/1‑93 (MQ=255)

                                                   aaaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCt                                      >  1:2728104/1‑93 (MQ=255)

                                                    aaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTg                                     >  1:5837154/1‑93 (MQ=255)

                                                    aaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTg                                     >  1:5230728/1‑93 (MQ=255)

                                                     aaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGc                                    >  1:2293558/1‑93 (MQ=255)

                                                      aCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCa                                   <  1:6466723/93‑1 (MQ=255)

                                                      aCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCa                                   >  1:2974872/1‑93 (MQ=255)

                                                       cAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAg                                  <  2:5844655/93‑1 (MQ=255)

                                                        aGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAgg                                 <  1:1023788/93‑1 (MQ=255)

                                                         gATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAACTTGCAGGa                                >  1:943021/1‑93 (MQ=255)

                                                            tCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCa                             <  1:5094025/93‑1 (MQ=255)

                                                             cGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAt                            <  2:4527639/93‑1 (MQ=255)

                                                             cGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAt                            <  1:4172243/93‑1 (MQ=255)

                                                              gTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATg                           <  1:1075368/93‑1 (MQ=255)

                                                              gTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATg                           >  1:4093694/1‑93 (MQ=255)

                                                               ttCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgc                          <  2:849408/93‑1 (MQ=255)

                                                               ttCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATga                          >  1:2338285/1‑92 (MQ=255)

                                                                 cAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcag                        >  1:423455/1‑93 (MQ=255)

                                                                  aGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcagc                       >  1:5103158/1‑93 (MQ=255)

                                                                   gCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcagca                      >  1:1518019/1‑93 (MQ=255)

                                                                    cAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCAc                     <  1:3246676/93‑1 (MQ=255)

                                                                     aaTCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACt                    >  2:5363109/1‑93 (MQ=255)

                                                                     aaTCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACt                    >  2:4674611/1‑93 (MQ=255)

                                                                     aaTCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACt                    <  1:3780962/93‑1 (MQ=255)

                                                                       tCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACttt                  >  1:951793/1‑92 (MQ=255)

                                                                       tCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTg                  <  2:5386154/93‑1 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc                >  2:2154659/1‑93 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc                >  2:4139435/1‑93 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATACAGCACTTggc                >  2:2616148/1‑91 (MQ=255)

                                                                           aGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTa              >  1:2065932/1‑93 (MQ=255)

                                                                             aCGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACa            >  1:5419970/1‑93 (MQ=255)

                                                                              cGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACaa           <  1:5321540/93‑1 (MQ=255)

                                                                                gtgtAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACaaaa         >  1:612368/1‑93 (MQ=255)

                                                                                  gtAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAtt       >  2:4747318/1‑93 (MQ=255)

                                                                                   tAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAttt      >  2:3545654/1‑93 (MQ=255)

                                                                                     gTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAttttt    >  2:5013283/1‑93 (MQ=255)

                                                                                     gTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAttttt    >  2:5126324/1‑93 (MQ=255)

                                                                                     gTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAttttt    >  1:28919/1‑93 (MQ=255)

                                                                                     gTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAttttt    <  2:2839096/93‑1 (MQ=255)

                                                                                     gTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAttttt    >  1:1998021/1‑93 (MQ=255)

                                                                                      tGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAtttttt   >  2:3536662/1‑93 (MQ=255)

CGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTG  >  NC_000913/1202781‑1202960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATT  >  NC_000913/1202779‑1202964

GCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGC                                                                                              >  SRR4302534.3522953/1‑94 (MQ=60)

 CCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCCAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCC                                                                                             >  SRR4302534.2918340/1‑94 (MQ=60)

 CCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCC                                                                                             >  SRR4302534.1650978/1‑94 (MQ=60)

     TATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCAT                                                                                         >  SRR4302534.5279571/1‑94 (MQ=60)

     TATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCAT                                                                                         <  SRR4302534.5331662/94‑1 (MQ=60)

      ATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATG                                                                                        <  SRR4302534.530177/94‑1 (MQ=60)

      ATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATG                                                                                        >  SRR4302534.2984045/1‑94 (MQ=60)

      ATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATG                                                                                        <  SRR4302534.5645697/94‑1 (MQ=60)

       TTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGA                                                                                       <  SRR4302534.5861753/94‑1 (MQ=60)

       TTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGA                                                                                       <  SRR4302534.2164185/94‑1 (MQ=60)

        TAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAG                                                                                      <  SRR4302534.303614/94‑1 (MQ=60)

         AACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGA                                                                                     >  SRR4302534.590063/1‑94 (MQ=60)

          ACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAA                                                                                    >  SRR4302534.4694881/1‑94 (MQ=60)

           CCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAG                                                                                   >  SRR4302534.2380300/1‑94 (MQ=60)

           CCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAG                                                                                   <  SRR4302534.6145733/94‑1 (MQ=60)

            CAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGA                                                                                  <  SRR4302534.1667466/94‑1 (MQ=60)

              GCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACA                                                                                <  SRR4302534.280003/94‑1 (MQ=60)

               CGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGGCGCATGAGAAGACAG                                                                               >  SRR4302534.4828392/1‑94 (MQ=60)

               CGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAG                                                                               <  SRR4302534.2821252/94‑1 (MQ=60)

                GTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGC                                                                              <  SRR4302534.4048706/94‑1 (MQ=60)

                  CTGCTGGAGGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAA                                                                            <  SRR4302534.3960811/94‑1 (MQ=60)

                  CTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTTAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAA                                                                            >  SRR4302534.1251838/1‑94 (MQ=60)

                   TGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAT                                                                           <  SRR4302534.5159173/94‑1 (MQ=60)

                    GCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATT                                                                          <  SRR4302534.749641/94‑1 (MQ=60)

                     CTGGAAGTCATTGAACAGATCGGCGGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAGAGCAATTA                                                                         >  SRR4302534.2938086/1‑94 (MQ=60)

                     CTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTA                                                                         <  SRR4302534.2691674/94‑1 (MQ=60)

                     CTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTA                                                                         <  SRR4302534.4879154/94‑1 (MQ=60)

                      TGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAA                                                                        >  SRR4302534.211717/1‑94 (MQ=60)

                      TGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGGGTAGTGGAGCCGCATGAGAAGACAGCAATTAA                                                                        >  SRR4302534.238215/1‑94 (MQ=60)

                       GGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAC                                                                       >  SRR4302534.660938/1‑94 (MQ=60)

                       GGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAC                                                                       <  SRR4302534.2717640/94‑1 (MQ=60)

                         AAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGGCGCATGAGAAGACAGCAATTAACGA                                                                     >  SRR4302534.4192529/1‑94 (MQ=60)

                          AGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGAC                                                                    >  SRR4302534.4904710/1‑94 (MQ=60)

                            TCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGA                                                                  >  SRR4302534.1092826/1‑94 (MQ=60)

                              ATTGAACAGATCGGAAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGC                                                                <  SRR4302534.2939324/94‑1 (MQ=60)

                               TTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCT                                                               >  SRR4302534.2247791/1‑94 (MQ=60)

                               TTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCT                                                               <  SRR4302534.4666120/94‑1 (MQ=60)

                               TTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCT                                                               <  SRR4302534.6645309/94‑1 (MQ=60)

                                TGAACAGAGCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTG                                                              <  SRR4302534.5817989/94‑1 (MQ=60)

                                 GAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGT                                                             >  SRR4302534.4909160/1‑94 (MQ=60)

                                  AACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTA                                                            >  SRR4302534.2708061/1‑94 (MQ=60)

                                  AACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTA                                                            >  SRR4302534.5014208/1‑94 (MQ=60)

                                     AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                         >  SRR4302534.6607460/1‑94 (MQ=60)

                                     AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                         <  SRR4302534.5144568/94‑1 (MQ=60)

                                     AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                         >  SRR4302534.3893996/1‑94 (MQ=60)

                                     AGATCGGCAGTTATTAAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                         >  SRR4302534.2273230/1‑94 (MQ=60)

                                      GATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTC                                                        >  SRR4302534.1656568/1‑94 (MQ=60)

                                      GATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTC                                                        <  SRR4302534.5065694/94‑1 (MQ=60)

                                        TCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTC                                                      >  SRR4302534.2640268/1‑94 (MQ=60)

                                         CGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGGAATTAACGACGAGCTGTATCTCTCA                                                     >  SRR4302534.3062471/1‑94 (MQ=60)

                                          GGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA                                                    >  SRR4302534.4003752/1‑94 (MQ=60)

                                          GGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA                                                    >  SRR4302534.1320045/1‑94 (MQ=60)

                                          GGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA                                                    >  SRR4302534.4121824/1‑94 (MQ=60)

                                            CAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATT                                                  <  SRR4302534.1351104/94‑1 (MQ=60)

                                            CAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATT                                                  <  SRR4302534.1969109/94‑1 (MQ=60)

                                             AGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTT                                                 >  SRR4302534.5053251/1‑94 (MQ=60)

                                              GTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTC                                                <  SRR4302534.6244053/94‑1 (MQ=60)

                                               TTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCG                                               >  SRR4302534.6403158/1‑94 (MQ=60)

                                                 ATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAG                                             >  SRR4302534.5500080/1‑94 (MQ=60)

                                                 ATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAA                                             >  SRR4302534.6630569/1‑94 (MQ=60)

                                                 ATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAA                                             >  SRR4302534.1921830/1‑94 (MQ=60)

                                                 ATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAA                                             <  SRR4302534.2155022/94‑1 (MQ=60)

                                                   TCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGC                                           >  SRR4302534.5291493/1‑94 (MQ=60)

                                                   TCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGC                                           >  SRR4302534.4744407/1‑94 (MQ=60)

                                                    CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                          <  SRR4302534.813497/94‑1 (MQ=60)

                                                    CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                          <  SRR4302534.5910950/94‑1 (MQ=60)

                                                    CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                          <  SRR4302534.4380418/94‑1 (MQ=60)

                                                    CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                          >  SRR4302534.2800051/1‑94 (MQ=60)

                                                    CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                          <  SRR4302534.3179501/94‑1 (MQ=60)

                                                    CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                          >  SRR4302534.6037289/1‑94 (MQ=60)

                                                     AAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTG                                         >  SRR4302534.5371943/1‑94 (MQ=60)

                                                     AAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTG                                         >  SRR4302534.5995617/1‑94 (MQ=60)

                                                     AAAACAGATTAGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTG                                         <  SRR4302534.3477444/94‑1 (MQ=60)

                                                      AAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGC                                        >  SRR4302534.2354435/1‑94 (MQ=60)

                                                       AACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCA                                       >  SRR4302534.3052739/1‑94 (MQ=60)

                                                       AACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCA                                       <  SRR4302534.6318399/94‑1 (MQ=60)

                                                        ACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAG                                      <  SRR4302534.6640898/94‑1 (MQ=60)

                                                        ACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAG                                      >  SRR4302534.6326453/1‑94 (MQ=60)

                                                         CAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGG                                     <  SRR4302534.3493434/94‑1 (MQ=60)

                                                         CAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGG                                     <  SRR4302534.4960376/94‑1 (MQ=60)

                                                          AGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGA                                    >  SRR4302534.5499830/1‑94 (MQ=60)

                                                          AGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGA                                    >  SRR4302534.3891219/1‑94 (MQ=60)

                                                          AGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGA                                    <  SRR4302534.1050153/94‑1 (MQ=60)

                                                          AGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAACTTGCAGGA                                    >  SRR4302534.967009/1‑94 (MQ=60)

                                                            ATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGC                                  >  SRR4302534.4224582/1‑94 (MQ=60)

                                                              TCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAT                                <  SRR4302534.502035/94‑1 (MQ=60)

                                                              TCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAT                                <  SRR4302534.53743/94‑1 (MQ=60)

                                                              TCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAT                                <  SRR4302534.5231528/94‑1 (MQ=60)

                                                              TCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAT                                <  SRR4302534.5231527/94‑1 (MQ=60)

                                                               CGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATG                               <  SRR4302534.4284943/94‑1 (MQ=60)

                                                               CGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATG                               >  SRR4302534.4203701/1‑94 (MQ=60)

                                                                GTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGC                              <  SRR4302534.1103293/94‑1 (MQ=60)

                                                                GTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGA                              >  SRR4302534.2400334/1‑94 (MQ=60)

                                                                 TTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCA                             >  SRR4302534.2587990/1‑94 (MQ=60)

                                                                  TCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAG                            <  SRR4302534.4657619/94‑1 (MQ=60)

                                                                  TCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAG                            >  SRR4302534.434273/1‑94 (MQ=60)

                                                                   CAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGC                           >  SRR4302534.5240895/1‑94 (MQ=60)

                                                                    AGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCA                          >  SRR4302534.1557895/1‑94 (MQ=60)

                                                                      CAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACT                        <  SRR4302534.3333120/94‑1 (MQ=60)

                                                                       AATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTT                       >  SRR4302534.5186009/1‑94 (MQ=60)

                                                                       AATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTT                       <  SRR4302534.3882481/94‑1 (MQ=60)

                                                                       AATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTT                       <  SRR4302534.231633/94‑1 (MQ=60)

                                                                       AATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTT                       >  SRR4302534.4081033/1‑94 (MQ=60)

                                                                       AATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTT                       >  SRR4302534.4286243/1‑94 (MQ=60)

                                                                        ATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTT                      >  SRR4302534.976031/1‑94 (MQ=60)

                                                                        ATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTG                      <  SRR4302534.3322441/94‑1 (MQ=60)

                                                                        ATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTG                      >  SRR4302534.5858850/1‑94 (MQ=60)

                                                                        ATCGAAGACGGCGTAGAGGAGCCGCATGAGAAGACAGCAATTTACGACAAGCTGTATCTCTCtatgtcgctaatgcacgagcatgcataacttg                      >  SRR4302534.3079370/1‑62 (MQ=41)

                                                                          CGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTC                    <  SRR4302534.2931010/94‑1 (MQ=60)

                                                                           GAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCT                   <  SRR4302534.4694071/94‑1 (MQ=60)

                                                                            AAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTA                  >  SRR4302534.2119957/1‑94 (MQ=60)

                                                                             AGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTAC                 <  SRR4302534.969132/94‑1 (MQ=60)

                                                                             AGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTAC                 >  SRR4302534.885244/1‑94 (MQ=60)

                                                                              GACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACA                >  SRR4302534.5565811/1‑94 (MQ=60)

                                                                               ACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAA               <  SRR4302534.1993804/94‑1 (MQ=60)

                                                                                CGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAA              <  SRR4302534.5465064/94‑1 (MQ=60)

                                                                                 GGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAA             >  SRR4302534.2784629/1‑94 (MQ=60)

                                                                                 GGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAA             >  SRR4302534.627249/1‑94 (MQ=60)

                                                                                      AGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTT        >  SRR4302534.29701/1‑94 (MQ=60)

                                                                                      AGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTT        >  SRR4302534.2367497/1‑94 (MQ=60)

                                                                                      AGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTT        <  SRR4302534.2288054/94‑1 (MQ=60)

                                                                                      AGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTT        >  SRR4302534.2050342/1‑94 (MQ=60)

                                                                                        TGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGGACTTGTCTACAAAATTTTTTG      >  SRR4302534.2072798/1‑94 (MQ=60)

                                                                                          GAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCA    <  SRR4302534.2606965/94‑1 (MQ=60)

                                                                                          GAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCA    >  SRR4302534.4105846/1‑94 (MQ=60)

                                                                                           AGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCAT   <  SRR4302534.1190557/94‑1 (MQ=60)

                                                                                            GCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTCCAAAATTTTTTGCATT  <  SRR4302534.88630/94‑1 (MQ=60)

                                                                                            GCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACGAAATTTTTTGCATT  >  SRR4302534.3796729/1‑94 (MQ=60)

                                                                                            GCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATT  >  SRR4302534.3796728/1‑94 (MQ=60)

GCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATT  >  NC_000913/1202779‑1202964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`