Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,202,871	A→G	E131E (GAA→GAG)	ymfL →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,202,871	0	A	G	99.2%	868.9 / NA	253	E131E (GAA→GAG)	ymfL	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); major base G (122/128); minor base T (1/1); total (123/130)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 263 total aligned reads displayed.

CGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTT  >  NC_000913/1202781‑1202959

 gATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCg                                                                                       >  2:6042094/1‑93 (MQ=255)

   tatTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCa                                                                                     >  2:8504046/1‑93 (MQ=255)

        aCCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATgaga                                                                                >  2:8756009/1‑93 (MQ=255)

        aCCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATgaga                                                                                >  1:5801024/1‑93 (MQ=255)

        aCCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATgaga                                                                                <  2:5356441/93‑1 (MQ=255)

           aGCGTCTGCTGGAAGTCATTGAACCGATCTGCAGTTATTCAAACCCGATTCGTTCAGCATTCGACGCCGGTGTAGTGGGGCCACATgagagca                                                                             >  2:6066223/1‑90 (MQ=255)

           aGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGagaaga                                                                             <  2:7262771/93‑1 (MQ=255)

            gCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAc                                                                            >  2:7774075/1‑93 (MQ=255)

            gCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAc                                                                            >  1:2403591/1‑93 (MQ=255)

            gCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAc                                                                            >  1:1267635/1‑93 (MQ=255)

             cGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACa                                                                           >  2:3996032/1‑93 (MQ=255)

                 tgctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCaa                                                                       >  2:3474040/1‑93 (MQ=255)

                 tgctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCaa                                                                       >  2:3405290/1‑93 (MQ=255)

                 tgctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCaa                                                                       <  1:7521573/93‑1 (MQ=255)

                 tgctgGAAGTCATTGAACAGATAGGCAGTTATTCAAAACAGATTCGTTCAGCACTCGAGGACGGTGTAGTGGAGCCGAATGAGAAGACAGCaa                                                                       <  2:5952175/93‑1 (MQ=255)

                  gctgGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAt                                                                      <  2:5063467/93‑1 (MQ=255)

                   ctgAAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAtt                                                                     <  2:1709670/93‑1 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                   >  2:4502951/1‑93 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                   >  2:4399649/1‑93 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                   <  2:1079146/93‑1 (MQ=255)

                     ggAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTaa                                                                   <  1:7704042/93‑1 (MQ=255)

                      gAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAac                                                                  <  2:2406935/93‑1 (MQ=255)

                      gAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAac                                                                  <  2:1282887/93‑1 (MQ=255)

                          tCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAacgacg                                                              >  2:4293657/1‑93 (MQ=255)

                           cATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAcgacga                                                             <  2:6420368/93‑1 (MQ=255)

                           cATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAcgacga                                                             <  1:3175919/93‑1 (MQ=255)

                           cATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAcgacga                                                             <  2:2932170/93‑1 (MQ=255)

                            aTTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAg                                                            >  1:7033379/1‑93 (MQ=255)

                             atGAACAGATCGACAGGTATTCAAAACAGATGCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGc                                                           <  1:4610358/92‑1 (MQ=255)

                              tGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCt                                                          <  1:4451497/93‑1 (MQ=255)

                               gAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTg                                                         >  1:5564784/1‑93 (MQ=255)

                                 aCAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTa                                                       >  2:7976388/1‑93 (MQ=255)

                                   aGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtc                                                     >  1:1665175/1‑93 (MQ=255)

                                   aGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtc                                                     <  1:8043220/93‑1 (MQ=255)

                                     aTCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctc                                                   <  2:3717363/93‑1 (MQ=255)

                                     aTCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctc                                                   <  2:4016442/93‑1 (MQ=255)

                                       cGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTAtctctc                                                 <  1:7849745/93‑1 (MQ=255)

                                        ggCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCa                                                >  1:4823338/1‑93 (MQ=255)

                                        ggCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCa                                                <  2:7602904/93‑1 (MQ=255)

                                        ggCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCa                                                >  1:527304/1‑93 (MQ=255)

                                         gCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCaa                                               >  1:7492245/1‑93 (MQ=255)

                                         gCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCaa                                               <  2:843569/93‑1 (MQ=255)

                                           aGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAtt                                             <  1:1340953/93‑1 (MQ=255)

                                           aGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAAtt                                             >  1:5496313/1‑93 (MQ=255)

                                              tATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCg                                          >  1:1845480/1‑93 (MQ=255)

                                                ttCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGaa                                        >  2:7219886/1‑93 (MQ=255)

                                                ttCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGaa                                        <  1:883349/93‑1 (MQ=255)

                                                 tCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAg                                       >  1:1112126/1‑93 (MQ=255)

                                                 tCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAg                                       >  2:2820140/1‑93 (MQ=255)

                                                 tCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAg                                       >  2:7896498/1‑93 (MQ=255)

                                                  cAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGc                                      <  2:6628225/93‑1 (MQ=255)

                                                   aaaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGATCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCt                                     >  1:6695656/1‑93 (MQ=255)

                                                   aaaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCt                                     >  1:2287620/1‑93 (MQ=255)

                                                   aaaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCt                                     >  1:5887340/1‑93 (MQ=255)

                                                    aaaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCCATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTg                                    >  1:8738758/1‑93 (MQ=255)

                                                     aaCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGc                                   <  1:2483003/93‑1 (MQ=255)

                                                      aCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCa                                  >  2:2110734/1‑93 (MQ=255)

                                                      aCAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCa                                  >  2:2371579/1‑93 (MQ=255)

                                                         gATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGa                               >  2:5003141/1‑93 (MQ=255)

                                                         gATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGa                               >  2:3185525/1‑93 (MQ=255)

                                                            tCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCa                            <  1:5969472/93‑1 (MQ=255)

                                                            tCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCa                            <  1:4745323/93‑1 (MQ=255)

                                                              gTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATg                          >  2:1837942/1‑93 (MQ=255)

                                                               ttCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgc                         >  2:3538385/1‑93 (MQ=255)

                                                                tCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgca                        <  2:5507994/93‑1 (MQ=255)

                                                                tCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgca                        <  1:1604288/93‑1 (MQ=255)

                                                                tCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgca                        <  2:4118285/93‑1 (MQ=255)

                                                                tCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgca                        >  1:7981609/1‑93 (MQ=255)

                                                                 cAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcag                       >  2:15566/1‑93 (MQ=255)

                                                                 cAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcag                       <  1:3579164/93‑1 (MQ=255)

                                                                 cAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcag                       <  2:5397431/93‑1 (MQ=255)

                                                                  aGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcagc                      >  2:6773067/1‑93 (MQ=255)

                                                                  aGCAATCGAAGACGGTGGAGTGGAGCCGCATGAGAAGACAGGAATTAACGACGAGCTGTAGCTCTCAATTTCGAAGCGGCAGGAGCAGgcagc                      <  2:5663558/93‑1 (MQ=255)

                                                                   gCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATgcagca                     <  2:3611518/93‑1 (MQ=255)

                                                                     aaTCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACt                   >  2:8386941/1‑93 (MQ=255)

                                                                     aaTCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACt                   <  2:4650691/93‑1 (MQ=255)

                                                                      aTCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACtt                  <  1:4611043/93‑1 (MQ=255)

                                                                       tCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTg                 >  2:5214307/1‑93 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc               <  1:3010818/93‑1 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc               <  2:8106013/93‑1 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc               >  1:6975343/1‑93 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc               >  2:1633214/1‑93 (MQ=255)

                                                                         gAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc               <  2:5158230/93‑1 (MQ=255)

                                                                         gAAGACGGTGTAGAGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGAATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTc               <  1:5218954/93‑1 (MQ=255)

                                                                          aaGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCt              >  1:4491268/1‑93 (MQ=255)

                                                                          aaGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCt              <  1:7620696/93‑1 (MQ=255)

                                                                          aaGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCt              <  2:8175757/93‑1 (MQ=255)

                                                                            gACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCGCTTGTCTAc            <  2:3277426/93‑1 (MQ=255)

                                                                            gACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTAc            <  2:2634779/93‑1 (MQ=255)

                                                                            gACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTAc            <  1:4021482/93‑1 (MQ=255)

                                                                             aCGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACa           >  1:1037675/1‑93 (MQ=255)

                                                                             aCGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACa           <  1:8577896/93‑1 (MQ=255)

                                                                              cGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACaa          <  1:4377508/93‑1 (MQ=255)

                                                                               ggTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACaaa         <  1:5368969/93‑1 (MQ=255)

                                                                                gtgtAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACaaaa        >  1:3839582/1‑93 (MQ=255)

                                                                                gtgtAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACaaaa        >  2:3924745/1‑93 (MQ=255)

                                                                                 tgtAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAt       >  1:6078388/1‑93 (MQ=255)

                                                                                  gtAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAtt      >  2:1779107/1‑93 (MQ=255)

                                                                                    aGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAtttt    >  1:8206148/1‑93 (MQ=255)

                                                                                      tGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAtttttt  <  1:6892472/93‑1 (MQ=255)

CGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTT  >  NC_000913/1202781‑1202959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCAT  >  NC_000913/1202778‑1202963

CGCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAG                                                                                              >  SRR4302541.4385163/1‑94 (MQ=60)

CGCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAG                                                                                              <  SRR4302541.4283778/94‑1 (MQ=60)

CGCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAG                                                                                              <  SRR4302541.2566452/94‑1 (MQ=60)

 GCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGC                                                                                             >  SRR4302541.3803374/1‑94 (MQ=60)

 GCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGC                                                                                             >  SRR4302541.3050368/1‑94 (MQ=60)

 GCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGC                                                                                             <  SRR4302541.2167757/94‑1 (MQ=60)

  CCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCC                                                                                            <  SRR4302541.5181537/94‑1 (MQ=60)

  CCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCC                                                                                            <  SRR4302541.2303844/94‑1 (MQ=60)

      TATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCAT                                                                                        >  SRR4302541.5732282/1‑94 (MQ=60)

       ATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATG                                                                                       >  SRR4302541.8860500/1‑94 (MQ=60)

         TAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAG                                                                                     <  SRR4302541.8389825/94‑1 (MQ=60)

          AACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGA                                                                                    >  SRR4302541.5859942/1‑94 (MQ=60)

           ACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAA                                                                                   >  SRR4302541.1087874/1‑94 (MQ=60)

            CCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAG                                                                                  <  SRR4302541.7089101/94‑1 (MQ=60)

            CCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAG                                                                                  <  SRR4302541.2275284/94‑1 (MQ=60)

            CCAGCGTATGCTGGAAGTCATTGAACATATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAG                                                                                  <  SRR4302541.1337575/94‑1 (MQ=60)

             CAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGA                                                                                 <  SRR4302541.5940175/94‑1 (MQ=60)

              AGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAC                                                                                >  SRR4302541.2427191/1‑94 (MQ=60)

              AGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGAC                                                                                >  SRR4302541.1280244/1‑94 (MQ=60)

               GCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACA                                                                               <  SRR4302541.3221300/94‑1 (MQ=60)

               GCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACA                                                                               >  SRR4302541.5096275/1‑94 (MQ=60)

               GCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACA                                                                               <  SRR4302541.8249036/94‑1 (MQ=60)

                CGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAG                                                                              >  SRR4302541.7956395/1‑94 (MQ=60)

                   CTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAA                                                                           <  SRR4302541.164974/94‑1 (MQ=60)

                    TGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAT                                                                          >  SRR4302541.8019495/1‑94 (MQ=60)

                    TGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAT                                                                          <  SRR4302541.7601946/94‑1 (MQ=60)

                    TGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAAT                                                                          >  SRR4302541.7048064/1‑94 (MQ=60)

                       TGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAA                                                                       >  SRR4302541.2329772/1‑94 (MQ=60)

                       TGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAA                                                                       >  SRR4302541.8899464/1‑94 (MQ=60)

                        GGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAAC                                                                      <  SRR4302541.7785978/94‑1 (MQ=60)

                         gaatgcattgaacaaatcggcaataatccaaaccagctgcgtttAGCAATCGAAGACGGTGTAGTGGACCCGCATGAGAAGCCAGCAATTAACG                                                                     <  SRR4302541.4114177/50‑1 (MQ=60)

                         GAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACG                                                                     <  SRR4302541.4518977/94‑1 (MQ=60)

                         GAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACG                                                                     <  SRR4302541.6581197/94‑1 (MQ=60)

                             TCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGA                                                                 <  SRR4302541.5457879/94‑1 (MQ=60)

                             TCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGA                                                                 >  SRR4302541.4570002/1‑94 (MQ=60)

                              CATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAG                                                                >  SRR4302541.7108145/1‑94 (MQ=60)

                              CATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAG                                                                <  SRR4302541.4201695/94‑1 (MQ=60)

                              CATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAG                                                                <  SRR4302541.3208010/94‑1 (MQ=60)

                                TTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCT                                                              <  SRR4302541.4657186/94‑1 (MQ=60)

                                ATGAACAGATCGACAGGTATTCAAAACAGATGCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCT                                                              <  SRR4302541.4657185/94‑1 (MQ=60)

                                 TGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTG                                                             >  SRR4302541.5621743/1‑94 (MQ=60)

                                 TGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTG                                                             >  SRR4302541.8213319/1‑94 (MQ=60)

                                 TGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTG                                                             <  SRR4302541.4496272/94‑1 (MQ=60)

                                   AACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTA                                                           >  SRR4302541.4554180/1‑94 (MQ=60)

                                     CAGATCGGCAGTTATTCAAAACAGATTCGTTCAGTAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATC                                                         <  SRR4302541.5420518/94‑1 (MQ=60)

                                     CAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATC                                                         >  SRR4302541.1681598/1‑94 (MQ=60)

                                      AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                        >  SRR4302541.5596841/1‑94 (MQ=60)

                                      AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                        >  SRR4302541.7638918/1‑94 (MQ=60)

                                      AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                        >  SRR4302541.8096206/1‑94 (MQ=60)

                                      AGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCT                                                        <  SRR4302541.8131669/94‑1 (MQ=60)

                                       GATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTC                                                       >  SRR4302541.1474324/1‑94 (MQ=60)

                                        ATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCT                                                      >  SRR4302541.5773873/1‑94 (MQ=60)

                                          CGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCA                                                    >  SRR4302541.1704365/1‑94 (MQ=60)

                                          CGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCA                                                    >  SRR4302541.4872502/1‑94 (MQ=60)

                                          CGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCA                                                    >  SRR4302541.532243/1‑94 (MQ=60)

                                          CGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCA                                                    <  SRR4302541.7935910/94‑1 (MQ=60)

                                           GGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA                                                   >  SRR4302541.7572366/1‑94 (MQ=60)

                                           GGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA                                                   <  SRR4302541.4245530/94‑1 (MQ=60)

                                             CAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATT                                                 >  SRR4302541.5552639/1‑94 (MQ=60)

                                              AGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTT                                                <  SRR4302541.957217/94‑1 (MQ=60)

                                              AGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTT                                                <  SRR4302541.1354161/94‑1 (MQ=60)

                                              AGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTT                                                >  SRR4302541.4846492/1‑94 (MQ=60)

                                              AGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACCACGAGCTATATCTCTCAATTT                                                >  SRR4302541.4725977/1‑94 (MQ=60)

                                               GTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTC                                               >  SRR4302541.2777146/1‑94 (MQ=60)

                                                TTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCG                                              >  SRR4302541.1863335/1‑94 (MQ=60)

                                                  ATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAA                                            <  SRR4302541.3376077/94‑1 (MQ=60)

                                                   TTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAG                                           >  SRR4302541.1122572/1‑94 (MQ=60)

                                                   TTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAG                                           <  SRR4302541.4468422/94‑1 (MQ=60)

                                                   TTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAG                                           >  SRR4302541.5581063/1‑94 (MQ=60)

                                                   TTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAG                                           <  SRR4302541.891437/94‑1 (MQ=60)

                                                    TCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGC                                          >  SRR4302541.1664919/1‑94 (MQ=60)

                                                     CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGATCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                         >  SRR4302541.6765484/1‑94 (MQ=60)

                                                     CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                         >  SRR4302541.5947249/1‑94 (MQ=60)

                                                     CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                         >  SRR4302541.6807231/1‑94 (MQ=60)

                                                     CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                         <  SRR4302541.7078127/94‑1 (MQ=60)

                                                     CAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCT                                         >  SRR4302541.2309760/1‑94 (MQ=60)

                                                      AAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCCATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTG                                        >  SRR4302541.8832297/1‑94 (MQ=60)

                                                      AAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTG                                        >  SRR4302541.4837742/1‑94 (MQ=60)

                                                       AAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGC                                       <  SRR4302541.602017/94‑1 (MQ=60)

                                                        AACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCA                                      >  SRR4302541.766644/1‑94 (MQ=60)

                                                        AACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCA                                      >  SRR4302541.7837595/1‑94 (MQ=60)

                                                        AACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCA                                      <  SRR4302541.2507947/94‑1 (MQ=60)

                                                         ACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAG                                     <  SRR4302541.362740/94‑1 (MQ=60)

                                                          CAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGG                                    <  SRR4302541.7764141/94‑1 (MQ=60)

                                                            GATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAG                                  >  SRR4302541.681248/1‑94 (MQ=60)

                                                             ATTCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGC                                 <  SRR4302541.3920586/94‑1 (MQ=60)

                                                               TCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAT                               <  SRR4302541.6030348/94‑1 (MQ=60)

                                                               TCGTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCAT                               <  SRR4302541.4793791/94‑1 (MQ=60)

                                                                 GTTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGC                             <  SRR4302541.5401217/94‑1 (MQ=60)

                                                                  TTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCA                            <  SRR4302541.3014704/94‑1 (MQ=60)

                                                                  TTCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCA                            >  SRR4302541.8069526/1‑94 (MQ=60)

                                                                   TCAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAG                           <  SRR4302541.1620245/94‑1 (MQ=60)

                                                                    CAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGC                          <  SRR4302541.3615436/94‑1 (MQ=60)

                                                                    CAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGC                          <  SRR4302541.3615437/94‑1 (MQ=60)

                                                                    CAGCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGC                          <  SRR4302541.6554649/94‑1 (MQ=60)

                                                                      GCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCAT                        >  SRR4302541.4661251/1‑94 (MQ=60)

                                                                      GCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCAC                        >  SRR4302541.2447773/1‑94 (MQ=60)

                                                                      GCAATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCAC                        <  SRR4302541.7856563/94‑1 (MQ=60)

                                                                         ATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTG                     <  SRR4302541.1531800/94‑1 (MQ=60)

                                                                         ATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTG                     <  SRR4302541.4657879/94‑1 (MQ=60)

                                                                         ATCGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTG                     <  SRR4302541.6103013/94‑1 (MQ=60)

                                                                           CGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTC                   >  SRR4302541.7049678/1‑94 (MQ=60)

                                                                           CGAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTC                   >  SRR4302541.5293845/1‑94 (MQ=60)

                                                                            GAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCT                  >  SRR4302541.4536544/1‑94 (MQ=60)

                                                                            GAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCT                  <  SRR4302541.5272738/94‑1 (MQ=60)

                                                                            GAAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCT                  <  SRR4302541.3041212/94‑1 (MQ=60)

                                                                            GAAGACGGTGTAGAGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGAATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCT                  <  SRR4302541.5272737/94‑1 (MQ=60)

                                                                             AAGACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTA                 <  SRR4302541.7702067/94‑1 (MQ=60)

                                                                               GGCGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACA               <  SRR4302541.8588664/94‑1 (MQ=60)

                                                                               GACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACA               <  SRR4302541.4061224/94‑1 (MQ=60)

                                                                               GACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACA               <  SRR4302541.7592348/94‑1 (MQ=60)

                                                                               GACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACA               >  SRR4302541.1047288/1‑94 (MQ=60)

                                                                                ACGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAA              <  SRR4302541.8669999/94‑1 (MQ=60)

                                                                                 CGGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAA             <  SRR4302541.4421248/94‑1 (MQ=60)

                                                                                  GGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAT            >  SRR4302541.2320945/1‑94 (MQ=60)

                                                                                  GGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAA            <  SRR4302541.5424086/94‑1 (MQ=60)

                                                                                  GGTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAA            >  SRR4302541.3878254/1‑94 (MQ=60)

                                                                                   GTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGTTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAT           <  SRR4302541.2183144/94‑1 (MQ=60)

                                                                                   GTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAT           >  SRR4302541.6140439/1‑94 (MQ=60)

                                                                                   GTGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAAT           <  SRR4302541.3206217/94‑1 (MQ=60)

                                                                                    TGTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATT          >  SRR4302541.1268396/1‑94 (MQ=60)

                                                                                     GTAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTT         >  SRR4302541.5997969/1‑94 (MQ=60)

                                                                                      TAGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTT        >  SRR4302541.8295677/1‑94 (MQ=60)

                                                                                       AGTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTT       <  SRR4302541.4495728/94‑1 (MQ=60)

                                                                                        GTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTT      <  SRR4302541.7181952/94‑1 (MQ=60)

                                                                                        GTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTT      <  SRR4302541.8697555/94‑1 (MQ=60)

                                                                                        GTGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTT      <  SRR4302541.7181953/94‑1 (MQ=60)

                                                                                         TGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTG     <  SRR4302541.6966029/94‑1 (MQ=60)

                                                                                         TGGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTG     <  SRR4302541.1200190/94‑1 (MQ=60)

                                                                                          GGAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGC    >  SRR4302541.5574191/1‑94 (MQ=60)

                                                                                           GAGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCA   <  SRR4302541.1773287/94‑1 (MQ=60)

                                                                                            AGCCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCAT  >  SRR4302541.7842960/1‑94 (MQ=60)

CGCCGATATTAACCAGCGTCTGCTGGAAGTCATTGAACAGATCGGCAGTTATTCAAAACAGATTCGTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCAT  >  NC_000913/1202778‑1202963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`