Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,329,903 |
A→G |
S278G (AGT→GGT) |
topA → |
DNA topoisomerase type I omega protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,329,903 | 0 | A | G | 99.7%
| 1026.2
/ NA
| 293 | S278G (AGT→GGT) | topA | DNA topoisomerase type I omega protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (159/133); total (159/134) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 299 total aligned reads displayed.
CCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCAGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATG > NC_000913/1329813‑1329992
|
cgGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTa > 1:1139826/1‑93 (MQ=255)
ggTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTaa > 1:5656908/1‑93 (MQ=255)
ggTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTaa > 2:2023068/1‑93 (MQ=255)
gTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTaaa < 2:1306334/93‑1 (MQ=255)
aacaaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCt > 2:240775/1‑93 (MQ=255)
aacaaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCt < 2:682289/93‑1 (MQ=255)
acaaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTg > 2:5359793/1‑93 (MQ=255)
acaaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTg > 1:2064284/1‑93 (MQ=255)
caaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTgg > 2:2548806/1‑93 (MQ=255)
caaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTgg > 1:3127765/1‑93 (MQ=255)
caaAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTgg < 1:5291963/93‑1 (MQ=255)
aaaGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGgc < 2:4400138/93‑1 (MQ=255)
aaaGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGgc < 1:4403253/93‑1 (MQ=255)
aaaGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGgc < 1:3229464/93‑1 (MQ=255)
aaaGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGgc > 1:1548316/1‑93 (MQ=255)
aaGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGgcg < 2:5294156/93‑1 (MQ=255)
aaGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGgcg > 2:64193/1‑93 (MQ=255)
aCAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTGCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTcc < 2:2663150/93‑1 (MQ=255)
aCAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTcc < 2:3548025/93‑1 (MQ=255)
aCAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTcc > 2:6238895/1‑93 (MQ=255)
aaaCTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCtt > 2:4060357/1‑93 (MQ=255)
aaCTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCttt < 1:53416/93‑1 (MQ=255)
aaCTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCttt < 2:1237935/93‑1 (MQ=255)
aCTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCtttt > 1:3898079/1‑93 (MQ=255)
tCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTttat < 1:1642563/93‑1 (MQ=255)
tCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTttat > 2:5577828/1‑93 (MQ=255)
cAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTttatt < 1:2439486/93‑1 (MQ=255)
aGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTttatta > 1:3325270/1‑93 (MQ=255)
aGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTttatta < 1:4011205/93‑1 (MQ=255)
ggCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTAc > 2:2745475/1‑93 (MQ=255)
gCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTAcc > 1:4205853/1‑93 (MQ=255)
cTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACct < 2:221840/93‑1 (MQ=255)
cTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACct > 1:4638534/1‑93 (MQ=255)
cGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTa < 2:3394408/93‑1 (MQ=255)
ggTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTAc < 1:1073061/93‑1 (MQ=255)
ggTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTAc > 2:1198633/1‑93 (MQ=255)
ggTAAGTCTGCGGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTAc < 1:1415817/93‑1 (MQ=255)
gTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACg > 1:1301018/1‑93 (MQ=255)
tAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGc < 1:598389/93‑1 (MQ=255)
gTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGc > 1:5945909/1‑93 (MQ=255)
gTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTGATTACCTCTACGCTGc > 2:2320808/1‑93 (MQ=255)
tgctgGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGcaac > 1:5872491/1‑93 (MQ=255)
tctgGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGcaaca > 1:1208177/2‑93 (MQ=255)
ctgGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGcaacaa < 2:573479/93‑1 (MQ=255)
tgGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAg > 1:5370400/1‑93 (MQ=255)
tgGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAg < 1:1863484/93‑1 (MQ=255)
aaaaaGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTg > 2:4915910/1‑93 (MQ=255)
aaaaaGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGATGCAACAAGCTg > 2:5944501/1‑93 (MQ=255)
aaaaGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGc > 1:6022827/1‑93 (MQ=255)
aaaaGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGc < 1:4524159/93‑1 (MQ=255)
aGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACACGCTGCCAg > 1:4962752/1‑93 (MQ=255)
gcgcgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGc > 2:1936828/1‑93 (MQ=255)
cgcgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCCGCa > 2:3167532/1‑93 (MQ=255)
cgcgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCa < 2:1495081/93‑1 (MQ=255)
gcgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCAc < 1:5834856/93‑1 (MQ=255)
gcgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCAc > 2:2967585/1‑93 (MQ=255)
cgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCAcc < 2:6117559/93‑1 (MQ=255)
cgcTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCAcc < 2:3950203/93‑1 (MQ=255)
cTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCg < 1:6357001/93‑1 (MQ=255)
aCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTc > 2:4584251/1‑93 (MQ=255)
aCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTc < 1:5130983/93‑1 (MQ=255)
aCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTc > 1:5258733/1‑93 (MQ=255)
aCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTc < 2:545895/93‑1 (MQ=255)
aCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTc > 1:2912836/1‑93 (MQ=255)
aCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTc > 2:5653983/1‑93 (MQ=255)
aGCGTGCTGGAACGTGAAGACAACCCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCtt < 1:226598/93‑1 (MQ=255)
aGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCtt < 2:3005082/93‑1 (MQ=255)
aGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCtt < 2:4856352/93‑1 (MQ=255)
gCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTg < 2:1733740/93‑1 (MQ=255)
gCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTg > 1:1768560/1‑93 (MQ=255)
gCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTg > 1:2015483/1‑93 (MQ=255)
gCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTg < 2:835521/93‑1 (MQ=255)
gCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTg > 2:2718063/1‑93 (MQ=255)
cGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTgg < 1:2707016/93‑1 (MQ=255)
gTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGa > 2:3626540/1‑93 (MQ=255)
gTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGa > 2:1144325/1‑93 (MQ=255)
tGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGAt < 2:1628131/93‑1 (MQ=255)
tGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGAt > 1:1508825/1‑93 (MQ=255)
tGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACACGTCTTGGAt > 1:2325727/1‑93 (MQ=255)
gCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGAtt > 1:2994812/1‑93 (MQ=255)
ggAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTgg > 2:6066680/1‑93 (MQ=255)
aCGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGTCGt < 1:3752575/93‑1 (MQ=255)
aCGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAACCTGCCAGCACCCGTCTTGGATTTGGCGt > 2:3227554/1‑93 (MQ=255)
cGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTg > 1:1039893/1‑93 (MQ=255)
tGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCACCAAGCTGTCAGCACCCGTCTTGGATTTGGCGTGaa > 1:957398/1‑93 (MQ=255)
tGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGaa < 1:746391/93‑1 (MQ=255)
gACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGaaaaaa < 1:3188943/93‑1 (MQ=255)
aCAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGaaaaaaa < 1:4928050/93‑1 (MQ=255)
aaaCCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAAcc < 2:431557/93‑1 (MQ=255)
aaCCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCa < 1:6123919/93‑1 (MQ=255)
aCCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCat > 2:511360/1‑93 (MQ=255)
cGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatga > 2:484645/1‑93 (MQ=255)
gACAACCGGTAAACCTGGCGCTCCTTGTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgat < 2:4468436/93‑1 (MQ=255)
aCAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgatg > 2:4669030/1‑93 (MQ=255)
aCAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgatg < 1:642746/93‑1 (MQ=255)
cAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAGACCatgatga > 1:3103074/1‑93 (MQ=255)
cAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgatga > 1:2942561/1‑93 (MQ=255)
cAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgatga > 1:2564548/1‑93 (MQ=255)
aaCCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgatgat < 2:4069255/93‑1 (MQ=255)
aCCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCatgatgatg > 2:953889/1‑93 (MQ=255)
|
CCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCAGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATG > NC_000913/1329813‑1329992
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTCCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCAGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGGCGC > NC_000913/1329810‑1329996
|
CGTCCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCG > SRR4302534.1965120/1‑94 (MQ=60)
CGTCCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCG > SRR4302534.6022460/1‑94 (MQ=60)
GTCCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGG > SRR4302534.5544556/1‑94 (MQ=60)
TCCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGT > SRR4302534.113731/1‑94 (MQ=60)
CCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTA > SRR4302534.2751695/1‑94 (MQ=60)
CCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTA > SRR4302534.1169650/1‑94 (MQ=60)
CCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTA > SRR4302534.3220771/1‑94 (MQ=60)
CGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAA > SRR4302534.5810047/1‑94 (MQ=60)
GGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAA > SRR4302534.1808147/1‑94 (MQ=60)
GTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAAC > SRR4302534.3009367/1‑94 (MQ=60)
ACAACAAAGAACAAACTCAGGATGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACC < SRR4302534.5224178/94‑1 (MQ=60)
CAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCT < SRR4302534.3147064/94‑1 (MQ=60)
CAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCT > SRR4302534.3053468/1‑94 (MQ=60)
AACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTG > SRR4302534.59713/1‑94 (MQ=60)
AACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTG > SRR4302534.2094345/1‑94 (MQ=60)
AACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTG > SRR4302534.2118262/1‑94 (MQ=60)
ACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGG > SRR4302534.3209998/1‑94 (MQ=60)
ACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGG > SRR4302534.5337411/1‑94 (MQ=60)
ACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGG > SRR4302534.3286508/1‑94 (MQ=60)
CAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGC < SRR4302534.5434786/94‑1 (MQ=60)
CAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGC < SRR4302534.6623446/94‑1 (MQ=60)
CAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGC > SRR4302534.1588892/1‑94 (MQ=60)
CAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGC < SRR4302534.2187321/94‑1 (MQ=60)
AAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCG > SRR4302534.1884607/1‑94 (MQ=60)
AAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCG > SRR4302534.1096695/1‑94 (MQ=60)
AAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCG < SRR4302534.4522068/94‑1 (MQ=60)
AAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCG < SRR4302534.3315278/94‑1 (MQ=60)
GAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTC < SRR4302534.2515687/94‑1 (MQ=60)
AACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCC < SRR4302534.2966831/94‑1 (MQ=60)
AACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCC > SRR4302534.6276570/1‑94 (MQ=60)
AACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCC < SRR4302534.4242492/94‑1 (MQ=60)
atgatCTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTCCAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCT < SRR4302534.1460265/89‑1 (MQ=60)
ACACTCAGGCTGCGGTAAGTCTGCTGGAACAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTT < SRR4302534.2483440/94‑1 (MQ=60)
AAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTT > SRR4302534.1148684/1‑94 (MQ=60)
AACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTT < SRR4302534.502361/94‑1 (MQ=60)
AACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTT > SRR4302534.4002680/1‑94 (MQ=60)
AACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTT < SRR4302534.54853/94‑1 (MQ=60)
ACTCAGGCTGCGGTAAGTCTGCTGGAAAAATCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTA < SRR4302534.4278059/94‑1 (MQ=60)
ACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTA > SRR4302534.905156/1‑94 (MQ=60)
CTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTAT < SRR4302534.4693315/94‑1 (MQ=60)
CTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTAT < SRR4302534.3905668/94‑1 (MQ=60)
TCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATT > SRR4302534.5494983/1‑94 (MQ=60)
TCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATT < SRR4302534.1685394/94‑1 (MQ=60)
TCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACC‑ACAACCGGTAAACCTGGCGCTCCTTTTATTA > SRR4302534.5868472/1‑94 (MQ=60)
CAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTA > SRR4302534.6150898/1‑94 (MQ=60)
CAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTA < SRR4302534.2504323/94‑1 (MQ=60)
CAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTA > SRR4302534.3414201/1‑94 (MQ=60)
CAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTA > SRR4302534.2998278/1‑94 (MQ=60)
AGGCTGCGGTAAGTCTTCTGTAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAGCCGACAACGGGTAAACCTGGCGCTCCTTTTATTAC < SRR4302534.3599428/94‑1 (MQ=60)
AGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTAC < SRR4302534.4118622/94‑1 (MQ=60)
GGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACC > SRR4302534.4319381/1‑94 (MQ=60)
GCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCT > SRR4302534.4764395/1‑94 (MQ=60)
CTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTC > SRR4302534.1287989/1‑94 (MQ=60)
TGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCT < SRR4302534.827338/94‑1 (MQ=60)
GCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTA > SRR4302534.4630533/1‑94 (MQ=60)
GCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGAGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTA < SRR4302534.2460278/94‑1 (MQ=60)
CGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTAC > SRR4302534.1241180/1‑94 (MQ=60)
GGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACG > SRR4302534.1335334/1‑94 (MQ=60)
GGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACG < SRR4302534.1100909/94‑1 (MQ=60)
GGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACG < SRR4302534.2342264/94‑1 (MQ=60)
GGTAAGTCTGCGGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACG < SRR4302534.1453062/94‑1 (MQ=60)
GTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGC > SRR4302534.4265006/1‑94 (MQ=60)
TAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCT > SRR4302534.6599538/1‑94 (MQ=60)
TAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCT < SRR4302534.612979/94‑1 (MQ=60)
AAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTG > SRR4302534.2656262/1‑94 (MQ=60)
AGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGC > SRR4302534.6107350/1‑94 (MQ=60)
CTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTATCTCTACGCTGCAAC > SRR4302534.2069356/1‑94 (MQ=60)
CTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAAC > SRR4302534.4403945/1‑94 (MQ=60)
CTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAAC > SRR4302534.6031932/1‑94 (MQ=60)
CTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAAC > SRR4302534.1203525/1‑94 (MQ=60)
CTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAAC > SRR4302534.5997672/1‑94 (MQ=60)
ctCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACA > SRR4302534.1239969/3‑94 (MQ=60)
TGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACA > SRR4302534.368187/1‑94 (MQ=60)
TGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACA < SRR4302534.5234345/94‑1 (MQ=60)
CTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAG < SRR4302534.458640/94‑1 (MQ=60)
CTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAG > SRR4302534.5515119/1‑94 (MQ=60)
TGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGC < SRR4302534.1911991/94‑1 (MQ=60)
GGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCT > SRR4302534.1422165/1‑94 (MQ=60)
GGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCT > SRR4302534.3039245/1‑94 (MQ=60)
GGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAACACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCT < SRR4302534.6093136/94‑1 (MQ=60)
GAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTG < SRR4302534.994451/94‑1 (MQ=60)
GAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTG < SRR4302534.1809336/94‑1 (MQ=60)
AAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGC > SRR4302534.6186516/1‑94 (MQ=60)
AAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCC > SRR4302534.4895237/1‑94 (MQ=60)
AAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCC < SRR4302534.4646713/94‑1 (MQ=60)
AAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCA < SRR4302534.5742459/94‑1 (MQ=60)
AAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCA > SRR4302534.2292778/1‑94 (MQ=60)
AAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCA > SRR4302534.6440457/1‑94 (MQ=60)
AAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACACGCTGCCAG > SRR4302534.5097119/1‑94 (MQ=60)
AAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAG < SRR4302534.1892041/94‑1 (MQ=60)
AAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAG > SRR4302534.5097118/1‑94 (MQ=60)
AAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAG < SRR4302534.148353/94‑1 (MQ=60)
AGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGC > SRR4302534.4751830/1‑94 (MQ=60)
GCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCA > SRR4302534.6164299/1‑94 (MQ=60)
CGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCAC > SRR4302534.5520811/1‑94 (MQ=60)
CGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCAC > SRR4302534.6134069/1‑94 (MQ=60)
GCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACC < SRR4302534.5993262/94‑1 (MQ=60)
CGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCC > SRR4302534.1571547/1‑94 (MQ=60)
CGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCC > SRR4302534.1187441/1‑94 (MQ=60)
CGCGACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTCCCTCTACGCTGCAACAAGCTGCCAGCACCC < SRR4302534.167699/94‑1 (MQ=60)
CGCGACAGCGTGCTGGAACGTGAAGAAAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCC < SRR4302534.2035029/94‑1 (MQ=60)
GCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCG < SRR4302534.3509433/94‑1 (MQ=60)
CTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGT < SRR4302534.6528677/94‑1 (MQ=60)
TACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTC > SRR4302534.5400825/1‑94 (MQ=60)
TACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTC > SRR4302534.2989293/1‑94 (MQ=60)
ACAGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCT < SRR4302534.5269509/94‑1 (MQ=60)
AGCGTGCTGGAACGTGAAGACAACCCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTG < SRR4302534.232513/94‑1 (MQ=60)
AGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTG > SRR4302534.2068237/1‑94 (MQ=60)
AGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTG > SRR4302534.1814489/1‑94 (MQ=60)
AGCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTG < SRR4302534.2371499/94‑1 (MQ=60)
GCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGG < SRR4302534.3867744/94‑1 (MQ=60)
GCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGG < SRR4302534.3413533/94‑1 (MQ=60)
GCGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGG < SRR4302534.4020430/94‑1 (MQ=60)
CGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGA < SRR4302534.2778501/94‑1 (MQ=60)
CGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGA > SRR4302534.3193555/1‑94 (MQ=60)
CGTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGA > SRR4302534.4040255/1‑94 (MQ=60)
GTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGAT > SRR4302534.1548502/1‑94 (MQ=60)
GTGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACACGTCTTGGAT > SRR4302534.2387440/1‑94 (MQ=60)
GTGCTGGAACGTGAAGACAAACCGACAACCGGGAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGAT > SRR4302534.6322786/1‑94 (MQ=60)
TGCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATT > SRR4302534.3073115/1‑94 (MQ=60)
GCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTT < SRR4302534.3140652/94‑1 (MQ=60)
GCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTT > SRR4302534.5500671/1‑94 (MQ=60)
GCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTT < SRR4302534.6026521/94‑1 (MQ=60)
GCTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTT < SRR4302534.1435330/94‑1 (MQ=60)
CTGGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTG < SRR4302534.5465793/94‑1 (MQ=60)
GGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGC > SRR4302534.5372262/1‑94 (MQ=60)
GGAACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGC < SRR4302534.3363156/94‑1 (MQ=60)
AACGTGAAGACAAACCGACAACCGGGAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGT > SRR4302534.5466882/1‑94 (MQ=60)
ACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGTCGTG < SRR4302534.3853354/94‑1 (MQ=60)
ACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTG > SRR4302534.1066737/1‑94 (MQ=60)
ACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTG < SRR4302534.5417852/94‑1 (MQ=60)
ACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTG > SRR4302534.608454/1‑94 (MQ=60)
ACGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTG < SRR4302534.1565872/94‑1 (MQ=60)
CGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGA > SRR4302534.6127186/1‑94 (MQ=60)
CGTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGA < SRR4302534.6250515/94‑1 (MQ=60)
GTGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCACCAAGCTGTCAGCACCCGTCTTGGATTTGGCGTGAA > SRR4302534.981784/1‑94 (MQ=60)
TGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAA < SRR4302534.3192634/94‑1 (MQ=60)
TGAAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAA < SRR4302534.764888/94‑1 (MQ=60)
AAGACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAA > SRR4302534.1591247/1‑94 (MQ=60)
GACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAA < SRR4302534.3273347/94‑1 (MQ=60)
ACAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAAC < SRR4302534.5061617/94‑1 (MQ=60)
CAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACC < SRR4302534.3288104/94‑1 (MQ=60)
CAAACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACC > SRR4302534.1947974/1‑94 (MQ=60)
AACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCAT < SRR4302534.6290489/94‑1 (MQ=60)
AACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCAT < SRR4302534.75771/94‑1 (MQ=60)
ACCGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATG < SRR4302534.2790443/94‑1 (MQ=60)
ACCGACAACCGGTAAACCTGCCGCTCCTTTTATTAGCTCTACGCTGCAACAAGCTGCCAGCCCCCGTCTTGGATTTGGCGTGAAAAAAACCATG < SRR4302534.2518025/94‑1 (MQ=60)
CGACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGAT < SRR4302534.1539730/94‑1 (MQ=60)
GACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATG > SRR4302534.3246003/1‑94 (MQ=60)
GACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATG > SRR4302534.5066890/1‑94 (MQ=60)
ACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAGACCATGATGA > SRR4302534.3184703/1‑94 (MQ=60)
ACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGA < SRR4302534.658345/94‑1 (MQ=60)
ACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGA > SRR4302534.3019768/1‑94 (MQ=60)
ACAACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGA > SRR4302534.2632519/1‑94 (MQ=60)
AACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCCTGATGATG < SRR4302534.6531402/94‑1 (MQ=60)
AACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATG < SRR4302534.4338424/94‑1 (MQ=60)
ACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGG > SRR4302534.909367/1‑94 (MQ=60)
ACCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGG < SRR4302534.5418057/94‑1 (MQ=60)
CCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGGC > SRR4302534.6370277/1‑94 (MQ=60)
CCGGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGGC > SRR4302534.843903/1‑94 (MQ=60)
GGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGGCGC < SRR4302534.5008169/94‑1 (MQ=60)
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CGTCCGGTCAACAAAGAACAAACTCAGGCTGCGGTAAGTCTGCTGGAAAAAGCGCGCTACAGCGTGCTGGAACGTGAAGACAAACCGACAACCAGTAAACCTGGCGCTCCTTTTATTACCTCTACGCTGCAACAAGCTGCCAGCACCCGTCTTGGATTTGGCGTGAAAAAAACCATGATGATGGCGC > NC_000913/1329810‑1329996
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |