Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,354,431 |
T→C |
D235G (GAT→GGT) |
sapA ← |
SapA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,354,431 | 0 | T | C | 100.0%
| 950.5
/ NA
| 265 | D235G (GAT→GGT) | sapA | SapA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/134); total (131/134) |
Only 100 of 276 total aligned reads displayed.
CCGGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCATCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCC > NC_000913/1354341‑1354520
|
ccGGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGtcacca > 2:5315722/1‑93 (MQ=255)
cGGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTcaccat < 2:6223986/93‑1 (MQ=255)
gcAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGAc < 2:3492269/92‑1 (MQ=255)
aGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGt < 2:660213/93‑1 (MQ=255)
aGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGt < 2:4676886/93‑1 (MQ=255)
ggAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGtt > 2:5982825/1‑93 (MQ=255)
ggAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGtt < 1:2558899/93‑1 (MQ=255)
ggAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGtt < 1:2477434/93‑1 (MQ=255)
gAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTg > 1:933132/1‑93 (MQ=255)
aGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGt < 1:96758/93‑1 (MQ=255)
gTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTa < 1:5420630/93‑1 (MQ=255)
tCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGc < 1:451758/93‑1 (MQ=255)
tCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGc < 2:1231742/93‑1 (MQ=255)
cGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCg > 2:5418428/1‑93 (MQ=255)
aCAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGaa < 1:91111/93‑1 (MQ=255)
aCAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGaa < 1:5971270/93‑1 (MQ=255)
cAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAAt > 2:2830166/1‑93 (MQ=255)
aGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATa < 1:4332380/93‑1 (MQ=255)
gACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATaa < 1:6304865/93‑1 (MQ=255)
cGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAAt < 1:3220300/93‑1 (MQ=255)
cGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAAt < 2:3713272/93‑1 (MQ=255)
cGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAAt < 1:3479293/93‑1 (MQ=255)
cGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAAt < 2:2359080/93‑1 (MQ=255)
gTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAAtt < 2:4009517/93‑1 (MQ=255)
gTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAAtt < 2:3555293/93‑1 (MQ=255)
tCCGGTTCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTg < 1:3124069/93‑1 (MQ=255)
tCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTg < 1:2019556/93‑1 (MQ=255)
cGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGcc < 1:3778854/93‑1 (MQ=255)
cGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGcc < 1:3830817/93‑1 (MQ=255)
ggTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGccc < 1:6017580/93‑1 (MQ=255)
ggTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGCTGTAGGCGAATAAATTGccc > 1:2914933/1‑93 (MQ=255)
ggTGCCGCCGGAGCATAAACCCACCACTGCCTGCGTCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGccc < 2:5821399/93‑1 (MQ=255)
ggAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTa > 1:785460/1‑93 (MQ=255)
ggAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTa > 1:1094793/1‑93 (MQ=255)
gAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAt > 2:1133806/1‑93 (MQ=255)
gAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAt < 2:6405926/93‑1 (MQ=255)
gAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAt < 1:1706442/93‑1 (MQ=255)
gAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAt > 1:867697/1‑93 (MQ=255)
aGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAtt < 1:5660175/93‑1 (MQ=255)
aGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAtt < 2:4103134/93‑1 (MQ=255)
aGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAtt < 2:875719/93‑1 (MQ=255)
gCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTc > 1:6419163/1‑93 (MQ=255)
gCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTc > 2:1066748/1‑93 (MQ=255)
gCCTAAATCCACCACTACCTGCGGCATTAACGGTTTAACGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTc < 1:612721/93‑1 (MQ=255)
ccTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTcc < 2:2515182/93‑1 (MQ=255)
ccTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTcc > 1:3068344/1‑93 (MQ=255)
cTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCg > 1:5022082/1‑93 (MQ=255)
aaaTCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGAc < 2:2787061/93‑1 (MQ=255)
aaaTCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGAc < 2:2926001/93‑1 (MQ=255)
aTCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACaa < 1:1564126/93‑1 (MQ=255)
caccacTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTg > 1:705399/1‑93 (MQ=255)
caccacTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTg > 1:1611628/1‑93 (MQ=255)
caccacTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTg > 1:3636828/1‑93 (MQ=255)
caccacTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTg > 1:5747533/1‑93 (MQ=255)
cacTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATa > 1:6232928/1‑93 (MQ=255)
cacTACCTGCGGCATTAACGGGTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAACAAATTGCCCGGCGCGGTAATCCGACAACTGCTa > 2:1658364/1‑93 (MQ=255)
aCCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGa > 2:2486095/1‑93 (MQ=255)
ccTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGAc > 1:2983939/1‑93 (MQ=255)
ccTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGAc < 1:4654565/93‑1 (MQ=255)
tGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCg > 1:2310590/1‑93 (MQ=255)
gCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCgg > 2:978922/1‑93 (MQ=255)
cATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGcc < 1:5782327/93‑1 (MQ=255)
cATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGcc < 1:2116860/93‑1 (MQ=255)
cATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGcc < 2:3910747/93‑1 (MQ=255)
cATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGcc < 2:2592595/93‑1 (MQ=255)
aTTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCg > 2:610330/1‑93 (MQ=255)
ttAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGa < 1:527064/93‑1 (MQ=255)
tAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGAc < 2:1880921/93‑1 (MQ=255)
aCGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCg > 1:2754305/1‑93 (MQ=255)
ggTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGt < 1:1001919/93‑1 (MQ=255)
ggTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGt > 1:1941395/1‑93 (MQ=255)
ggTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGt < 1:3731326/93‑1 (MQ=255)
gTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGtt > 1:2391992/1‑93 (MQ=255)
tttACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTg > 2:4308491/1‑93 (MQ=255)
tttACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGCACCGGTGCCGACCGGTTg > 1:5238315/1‑93 (MQ=255)
gttACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTg < 2:6277143/92‑1 (MQ=255)
ttACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGa < 1:340670/93‑1 (MQ=255)
aCCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACg > 2:1763770/1‑93 (MQ=255)
cgcgCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGt < 1:1234688/93‑1 (MQ=255)
gcgcCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTc > 2:2694027/1‑93 (MQ=255)
cgcCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCg > 1:2255349/1‑93 (MQ=255)
ccAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAg > 2:1395919/1‑93 (MQ=255)
cAGACGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGt < 2:572291/93‑1 (MQ=255)
aGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGtt > 2:6181238/1‑93 (MQ=255)
aGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGtt < 2:513029/93‑1 (MQ=255)
aGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGtt < 1:4793925/93‑1 (MQ=255)
aGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGtt > 1:4280278/1‑93 (MQ=255)
gAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTg > 2:417746/1‑93 (MQ=255)
gAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTg < 1:3184178/93‑1 (MQ=255)
gAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTg > 2:6360378/1‑93 (MQ=255)
gAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGGTg > 2:4403465/1‑93 (MQ=255)
aaGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGc > 1:2955661/1‑93 (MQ=255)
aGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTTCt > 1:408143/1‑93 (MQ=255)
aGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCt > 2:2106599/1‑93 (MQ=255)
gTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTc > 1:4680473/1‑93 (MQ=255)
gTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTc < 2:3194027/93‑1 (MQ=255)
gTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTc > 1:4064965/1‑93 (MQ=255)
tcaccaTGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTcc > 2:1922104/1‑93 (MQ=255)
tcaccaTGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTcc < 2:3598502/93‑1 (MQ=255)
tcaccaTGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTcc < 1:6120686/93‑1 (MQ=255)
|
CCGGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCATCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCC > NC_000913/1354341‑1354520
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCATCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTGG > NC_000913/1354342‑1354523
|
CGGGCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATG > SRR4302534.5547231/1‑94 (MQ=60)
GGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGA > SRR4302534.5394778/1‑94 (MQ=60)
GGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGA > SRR4302534.564159/1‑94 (MQ=60)
GTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGAC > SRR4302534.6175860/1‑94 (MQ=60)
TCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACG > SRR4302534.3115474/1‑94 (MQ=60)
TCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACG > SRR4302534.5210498/1‑94 (MQ=60)
TCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACG > SRR4302534.1009959/1‑94 (MQ=60)
CAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGCCACCATGACGT > SRR4302534.2994950/1‑94 (MQ=60)
AGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTT < SRR4302534.4424634/94‑1 (MQ=60)
AGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTT > SRR4302534.4805046/1‑94 (MQ=60)
AGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTT < SRR4302534.889431/94‑1 (MQ=60)
AGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTT < SRR4302534.908020/94‑1 (MQ=60)
AGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGACACAATGACGTT > SRR4302534.1781965/1‑94 (MQ=60)
GGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTG < SRR4302534.2543265/94‑1 (MQ=60)
GGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTG < SRR4302534.2626730/94‑1 (MQ=60)
GGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTG > SRR4302534.956873/1‑94 (MQ=60)
GGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTG > SRR4302534.2067136/1‑94 (MQ=60)
GAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGT < SRR4302534.5836122/94‑1 (MQ=60)
AGTTTCGACAGACGTCCGGTGCCGCCGTAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTA < SRR4302534.4968830/94‑1 (MQ=60)
AGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTA < SRR4302534.99346/94‑1 (MQ=60)
AGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTA < SRR4302534.3831654/94‑1 (MQ=60)
AGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTA < SRR4302534.146013/94‑1 (MQ=60)
AGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTA < SRR4302534.6312588/94‑1 (MQ=60)
GTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAG < SRR4302534.5566494/94‑1 (MQ=60)
TCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCG < SRR4302534.463201/94‑1 (MQ=60)
CGACAGACGTCCGGTGCCTCCGGAGCCTAAATCCACCACTGCCGGCGGCATTAACGGTTTACCGCGCGAGAAGTCACCATGACGTTGTAGGCGA < SRR4302534.1927681/94‑1 (MQ=60)
GACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAA > SRR4302534.4518074/1‑94 (MQ=60)
ACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAAT < SRR4302534.93550/94‑1 (MQ=60)
ACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAAT < SRR4302534.6133447/94‑1 (MQ=60)
CAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGGAGGCGAATA < SRR4302534.6458944/94‑1 (MQ=60)
AGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGTCGAATAA < SRR4302534.5505455/94‑1 (MQ=60)
AGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAA < SRR4302534.4449525/94‑1 (MQ=60)
AGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAA > SRR4302534.922919/1‑94 (MQ=60)
GACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAA < SRR4302534.6475359/94‑1 (MQ=60)
CGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATT < SRR4302534.3572813/94‑1 (MQ=60)
CGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATT < SRR4302534.3305796/94‑1 (MQ=60)
GTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTG > SRR4302534.2429178/1‑94 (MQ=60)
TCCGGTTCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGC < SRR4302534.3206203/94‑1 (MQ=60)
TCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGC < SRR4302534.2072401/94‑1 (MQ=60)
CCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCC > SRR4302534.2367751/1‑94 (MQ=60)
CGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCC < SRR4302534.3880310/94‑1 (MQ=60)
CGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCC < SRR4302534.3933705/94‑1 (MQ=60)
CGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGCTGTAGGCGAATAAATTGCCC > SRR4302534.2991437/1‑94 (MQ=60)
GGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCG > SRR4302534.246790/1‑94 (MQ=60)
GGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCG < SRR4302534.2147225/94‑1 (MQ=60)
GGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCG < SRR4302534.6181083/94‑1 (MQ=60)
GCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCG < SRR4302534.3773239/94‑1 (MQ=60)
GCCGGACCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGG > SRR4302534.1160566/1‑94 (MQ=60)
CCGGAGCCTAAATCCACCACTGCCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGT < SRR4302534.1217991/94‑1 (MQ=60)
CCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGT < SRR4302534.4481195/94‑1 (MQ=60)
CCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGT < SRR4302534.852037/94‑1 (MQ=60)
CCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGG > SRR4302534.2655866/1‑94 (MQ=60)
CGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTA > SRR4302534.3152120/1‑94 (MQ=60)
CGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTA > SRR4302534.1123271/1‑94 (MQ=60)
CGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTA > SRR4302534.3261488/1‑94 (MQ=60)
CGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTA > SRR4302534.805087/1‑94 (MQ=60)
GGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTAT > SRR4302534.889603/1‑94 (MQ=60)
GAGCGTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAGATTGCCCGGCGCGGTAGT < SRR4302534.5248511/94‑1 (MQ=60)
GAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATT < SRR4302534.2256612/94‑1 (MQ=60)
GAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATT < SRR4302534.1750771/94‑1 (MQ=60)
AGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTC < SRR4302534.4902188/94‑1 (MQ=60)
AGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTC < SRR4302534.5813407/94‑1 (MQ=60)
AGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTC > SRR4302534.6592316/1‑94 (MQ=60)
AGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGACCGGTGCGGTATTC > SRR4302534.3511910/1‑94 (MQ=60)
GCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCC < SRR4302534.4687707/94‑1 (MQ=60)
GCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCC > SRR4302534.3148930/1‑94 (MQ=60)
GCCTAAATCCACCACTACCTGCGGCATTAACGGTTTAACGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCC < SRR4302534.627609/94‑1 (MQ=60)
ACCTAAATCCACCACTGCCTGCGGCATTAACGGTTTACCGCTCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCC < SRR4302534.4829480/94‑1 (MQ=60)
CCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCG > SRR4302534.5157752/1‑94 (MQ=60)
CCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCG > SRR4302534.3663167/1‑94 (MQ=60)
CTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGA > SRR4302534.2464359/1‑94 (MQ=60)
AAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACA > SRR4302534.6292582/1‑94 (MQ=60)
AAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACA > SRR4302534.1605746/1‑94 (MQ=60)
AATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAA > SRR4302534.1121110/1‑94 (MQ=60)
ATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAAC < SRR4302534.1605057/94‑1 (MQ=60)
TCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCcaccaat > SRR4302534.2353018/1‑87 (MQ=60)
TCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACT < SRR4302534.5933887/94‑1 (MQ=60)
CCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTG > SRR4302534.1653695/1‑94 (MQ=60)
CCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTG > SRR4302534.5903370/1‑94 (MQ=60)
CCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTG > SRR4302534.722707/1‑94 (MQ=60)
CCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTG > SRR4302534.3734578/1‑94 (MQ=60)
CACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGA < SRR4302534.766156/94‑1 (MQ=60)
CACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGA > SRR4302534.6419131/1‑94 (MQ=60)
CACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGA > SRR4302534.3983343/1‑94 (MQ=60)
CCACTACCTTCGGCATTAACCGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATA > SRR4302534.6478899/1‑94 (MQ=60)
CCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATA < SRR4302534.4309024/94‑1 (MQ=60)
CCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATA > SRR4302534.6402110/1‑94 (MQ=60)
ACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACG > SRR4302534.3905875/1‑94 (MQ=60)
CTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGG < SRR4302534.3432351/94‑1 (MQ=60)
CTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGG < SRR4302534.4746494/94‑1 (MQ=60)
TACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGA > SRR4302534.2038882/1‑94 (MQ=60)
TACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGA > SRR4302534.4408870/1‑94 (MQ=60)
ACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGAC > SRR4302534.3061998/1‑94 (MQ=60)
CCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACC < SRR4302534.4780924/94‑1 (MQ=60)
CCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACC > SRR4302534.5683175/1‑94 (MQ=60)
CCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACC < SRR4302534.2730233/94‑1 (MQ=60)
CTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCG > SRR4302534.2371916/1‑94 (MQ=60)
CTGCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCG < SRR4302534.6590602/94‑1 (MQ=60)
GCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGT < SRR4302534.1655874/94‑1 (MQ=60)
GCGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGT > SRR4302534.69668/1‑94 (MQ=60)
CGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTG > SRR4302534.6216704/1‑94 (MQ=60)
CGGCATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTG < SRR4302534.3520549/94‑1 (MQ=60)
CATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCG < SRR4302534.5939181/94‑1 (MQ=60)
CATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCG < SRR4302534.2172560/94‑1 (MQ=60)
CATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCG > SRR4302534.6013845/1‑94 (MQ=60)
ATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGA > SRR4302534.1822084/1‑94 (MQ=60)
ATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGA > SRR4302534.991565/1‑94 (MQ=60)
ATTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGA < SRR4302534.5141503/94‑1 (MQ=60)
TTAACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGAC < SRR4302534.540149/94‑1 (MQ=60)
AACGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCG > SRR4302534.2826854/1‑94 (MQ=60)
CGGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGT > SRR4302534.1992166/1‑94 (MQ=60)
GGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTT < SRR4302534.4180328/94‑1 (MQ=60)
GGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTT < SRR4302534.3831586/94‑1 (MQ=60)
GGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTT < SRR4302534.1027607/94‑1 (MQ=60)
GGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTT < SRR4302534.3054357/94‑1 (MQ=60)
GGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTT < SRR4302534.675006/94‑1 (MQ=60)
GGTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTT > SRR4302534.2455560/1‑94 (MQ=60)
GTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTG > SRR4302534.1312755/1‑94 (MQ=60)
GTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTG < SRR4302534.2130337/94‑1 (MQ=60)
GTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTG < SRR4302534.3764541/94‑1 (MQ=60)
GTTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGCACCGGTGCCGACCGGTTG > SRR4302534.5379755/1‑94 (MQ=60)
GTTTACAGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTG > SRR4302534.4180610/1‑94 (MQ=60)
TTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGA < SRR4302534.2381616/94‑1 (MQ=60)
TTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGA < SRR4302534.163218/94‑1 (MQ=60)
TTTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGA < SRR4302534.3148194/94‑1 (MQ=60)
TTACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGAC < SRR4302534.349383/94‑1 (MQ=60)
TACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACG < SRR4302534.5994269/94‑1 (MQ=60)
ACCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGG > SRR4302534.614528/1‑94 (MQ=60)
CCGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGT > SRR4302534.2947939/1‑94 (MQ=60)
CGCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTC < SRR4302534.1267228/94‑1 (MQ=60)
GCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCG < SRR4302534.2995576/94‑1 (MQ=60)
GCGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCG > SRR4302534.2315131/1‑94 (MQ=60)
CGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGA < SRR4302534.6247229/94‑1 (MQ=60)
CGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGA < SRR4302534.3190935/94‑1 (MQ=60)
CGCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGA > SRR4302534.3579515/1‑94 (MQ=60)
GCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAG < SRR4302534.950307/94‑1 (MQ=60)
GCCAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCCGTTGGCGGTCGGG > SRR4302534.6333712/1‑94 (MQ=60)
CAGAAGTCACCATGATGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTT < SRR4302534.3886958/94‑1 (MQ=60)
CAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTT < SRR4302534.5844120/94‑1 (MQ=60)
CAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTT < SRR4302534.3280275/94‑1 (MQ=60)
CAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTT > SRR4302534.4396127/1‑94 (MQ=60)
CAGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTT > SRR4302534.3417182/1‑94 (MQ=60)
AGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTG > SRR4302534.2864303/1‑94 (MQ=60)
AGAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTG < SRR4302534.4924085/94‑1 (MQ=60)
GAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGC > SRR4302534.3033130/1‑94 (MQ=60)
GAAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGC < SRR4302534.3268364/94‑1 (MQ=60)
AAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTTCT > SRR4302534.418575/1‑94 (MQ=60)
AAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCT < SRR4302534.4167791/94‑1 (MQ=60)
AAGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCT < SRR4302534.945273/94‑1 (MQ=60)
AGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTC > SRR4302534.4174023/1‑94 (MQ=60)
AGTCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTC > SRR4302534.4807551/1‑94 (MQ=60)
TCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCT < SRR4302534.261241/94‑1 (MQ=60)
TCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCT < SRR4302534.6287174/94‑1 (MQ=60)
TCACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGATTGACGGTCGAGTTGCTCCT < SRR4302534.3221788/94‑1 (MQ=60)
CACCATGACGTTGTAGGCGAATAAATTGCCCTGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTG < SRR4302534.3553590/94‑1 (MQ=60)
CACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTG < SRR4302534.5766384/94‑1 (MQ=60)
CACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTG < SRR4302534.220581/94‑1 (MQ=60)
CACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTG > SRR4302534.3896739/1‑94 (MQ=60)
CACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGGATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGATGCTCCTG > SRR4302534.315346/1‑94 (MQ=60)
ACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTGG > SRR4302534.48/1‑94 (MQ=60)
ACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTGG > SRR4302534.4284551/1‑94 (MQ=60)
ACCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTGG < SRR4302534.3687188/94‑1 (MQ=60)
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CGGTCAGGAGTTTCGACAGACGTCCGGTGCCGCCGGAGCCTAAATCCACCACTACCTGCGGCATTAACGGTTTACCGCGCCAGAAGTCATCATGACGTTGTAGGCGAATAAATTGCCCGGCGCGGTATTCCGACAACTGATACGGACCGGTGCCGACCGGTTGACGGTCGAGTTGCTCCTGG > NC_000913/1354342‑1354523
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
