Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,237,247 |
+C |
intergenic (+60/‑337) |
ygjT → / → ygjU |
putative transport protein/putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,237,245 | 1 | . | C | 99.4%
| 592.8
/ ‑3.6
| 171 | intergenic (+58/‑339) | ygjT/ygjU | putative transport protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (103/67); total (104/67) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 |
Only 100 of 197 total aligned reads displayed.
ATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGA > NC_000913/3237156‑3237335
|
aTTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑c > 2:478765/1‑93 (MQ=255)
ttATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cc < 1:2962638/93‑2 (MQ=255)
tATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cct < 1:5405591/93‑3 (MQ=255)
tATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cct < 2:4011508/93‑3 (MQ=255)
tATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cct > 1:3394781/1‑91 (MQ=255)
tATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cct < 2:5533083/93‑3 (MQ=255)
tCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑ccttc > 1:1905263/1‑89 (MQ=255)
ggCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCa > 2:2120267/1‑93 (MQ=255)
ggCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCa > 1:5150579/1‑93 (MQ=255)
cATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAgg > 1:3080188/1‑93 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAggg > 1:2076865/1‑93 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAggg > 1:459566/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGga > 1:1668296/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGga > 1:2461365/1‑93 (MQ=255)
gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGgag < 2:2154646/93‑1 (MQ=255)
gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGgag < 2:2788487/93‑1 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGggga < 2:103816/93‑1 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGggga < 2:1206871/93‑1 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGgaga < 1:3637058/93‑1 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGgaga > 1:4604733/1‑93 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGgaga < 2:2318355/93‑1 (MQ=255)
tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGagag < 2:2182396/93‑1 (MQ=255)
aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAgg < 1:1570246/93‑1 (MQ=255)
aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAgg < 1:3937103/93‑1 (MQ=255)
aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAgg < 2:5794528/93‑1 (MQ=255)
agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAggg < 1:2632343/93‑1 (MQ=255)
agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAggg < 1:686699/93‑1 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTTTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGt > 1:5120507/1‑93 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGt < 2:2221202/93‑1 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCgg < 1:1830654/93‑1 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCgg > 2:2993999/1‑93 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg > 1:10212/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCgggg < 1:5003291/93‑1 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCggggg > 1:2173299/1‑92 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGt > 1:608304/1‑93 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTg > 1:2348419/1‑93 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGa < 2:3056641/93‑1 (MQ=255)
tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAg < 2:3169726/93‑1 (MQ=255)
ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAgg < 2:5300553/93‑1 (MQ=255)
ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAgg > 1:3271740/1‑93 (MQ=39)
gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCCGGGAGAGGGTCGGGGTGAggg > 2:1541440/1‑93 (MQ=255)
gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgggggggggg > 2:3351519/1‑93 (MQ=255)
gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAggg > 2:4260186/1‑93 (MQ=38)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTa > 1:104317/1‑93 (MQ=38)
aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTaa > 2:3614787/1‑93 (MQ=38)
tttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAAtt < 1:1468248/93‑1 (MQ=38)
tttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CTCTTCCAGCGAGAGGGTCGGGGTGAGGGTAAtt > 1:5538957/1‑93 (MQ=255)
ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAAttt < 1:4234498/93‑1 (MQ=38)
tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAAtttt > 1:184490/1‑93 (MQ=38)
tAATCTGCCTCAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTACCAGTGGGAGGGTCCGGGGGAGGGTAATTTTTc > 2:732393/1‑93 (MQ=255)
aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCg > 1:5045637/1‑93 (MQ=38)
tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCa < 1:4853703/93‑1 (MQ=37)
cTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCAc < 1:615956/93‑1 (MQ=37)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 2:3413157/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 1:5269223/1‑93 (MQ=38)
gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCg > 1:135636/1‑93 (MQ=37)
ccTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGa < 1:295213/93‑1 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 1:5973910/1‑93 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 2:657958/1‑93 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAGGGTAATTTTTCGCACCGAt > 2:6031763/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCCCCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg < 2:1245158/93‑1 (MQ=37)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg < 2:2494042/93‑1 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 2:6114083/1‑93 (MQ=37)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:3444010/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 2:3813258/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGCGAGAGGGTCGGGGGGAGGGAAATTTTTTGCACTGATg > 1:593330/1‑93 (MQ=255)
aaGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc < 1:5901854/93‑1 (MQ=37)
aaGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc > 2:3888516/1‑93 (MQ=38)
gCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg < 2:1940782/93‑1 (MQ=38)
ccGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTgg > 1:2110042/1‑93 (MQ=37)
cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGc > 2:1060342/1‑93 (MQ=37)
cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGc > 2:2413239/1‑93 (MQ=37)
tACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGt > 1:2442381/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTc > 1:5730389/1‑93 (MQ=37)
ccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTggttc > 2:4468807/1‑89 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtccc > 1:1814967/1‑93 (MQ=25)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTcccc < 2:131412/93‑1 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTcccc > 2:4195101/1‑93 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGAGAGGGTAATTTTTCGCACCGATGCTGGCCTGCTgccc > 1:4780339/1‑93 (MQ=25)
gTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCt < 1:4324555/93‑1 (MQ=25)
tCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTc > 1:5187619/1‑93 (MQ=25)
cATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCa < 2:71407/93‑1 (MQ=25)
cATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTccccccc > 2:3689603/1‑90 (MQ=37)
aCATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCAcccca > 1:1010538/1‑91 (MQ=21)
cATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCcccccccccca > 2:5620997/1‑90 (MQ=25)
aTGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCCAAc > 2:1744205/1‑93 (MQ=21)
gAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAccc < 1:5616783/93‑1 (MQ=21)
gAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAccc < 1:5951145/93‑1 (MQ=21)
cACCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCctct < 1:4948379/93‑1 (MQ=18)
aCCGTTTTCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCtctc < 1:3715797/93‑1 (MQ=18)
aCCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCCCCCCCCAccccccc > 2:4737167/1‑89 (MQ=21)
aCCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCCAACCCtctc > 2:5734219/1‑93 (MQ=18)
gTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCCCCCCACCCCTcccccc > 2:4492999/1‑93 (MQ=18)
tttCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCaa < 1:1113051/93‑1 (MQ=17)
tctccctctcc‑cTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAAc > 2:2072136/5‑93 (MQ=18)
ccctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACggg > 2:3968511/2‑93 (MQ=255)
cctctcc‑cTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCCAAccgcg > 1:4140862/1‑89 (MQ=18)
cctctcc‑cTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACgggg < 1:3566670/93‑1 (MQ=255)
cctctcc‑cTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACgggg < 1:3826328/93‑1 (MQ=255)
cctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACgggg > 2:5224014/1‑93 (MQ=255)
|
ATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGA > NC_000913/3237156‑3237335
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGCGAGGGG > NC_000913/3237155‑3237339
|
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCT‑C‑C > SRR4302532.1219373/1‑94 (MQ=60)
CGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCA > SRR4302532.58381/1‑94 (MQ=60)
CGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCA > SRR4302532.5327769/1‑94 (MQ=60)
GGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAG < SRR4302532.6156326/94‑1 (MQ=60)
GGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAG > SRR4302532.2383941/1‑94 (MQ=60)
GGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAG > SRR4302532.2519525/1‑94 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGG > SRR4302532.5763644/1‑94 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGG > SRR4302532.3182021/1‑94 (MQ=60)
CATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGG > SRR4302532.2146097/1‑94 (MQ=60)
CATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGG > SRR4302532.475553/1‑94 (MQ=60)
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGA > SRR4302532.2543252/1‑94 (MQ=60)
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGA > SRR4302532.2543253/1‑94 (MQ=60)
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGA > SRR4302532.1724752/1‑94 (MQ=60)
TGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAG > SRR4302532.5981764/1‑94 (MQ=60)
GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGA > SRR4302532.4761740/1‑94 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAG < SRR4302532.1408599/94‑1 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAG < SRR4302532.3759082/94‑1 (MQ=60)
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGG < SRR4302532.1623385/94‑1 (MQ=60)
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGG < SRR4302532.4069770/94‑1 (MQ=60)
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGG > SRR4302532.5522319/1‑94 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTTTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGT > SRR4302532.5296637/1‑94 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGT < SRR4302532.1849366/94‑1 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGT < SRR4302532.1910570/94‑1 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGT < SRR4302532.2720540/94‑1 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGT < SRR4302532.710261/94‑1 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTC < SRR4302532.4009711/94‑1 (MQ=60)
CAGCGGGGGGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCG < SRR4302532.1595596/94‑1 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGG > SRR4302532.10650/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGG > SRR4302532.4190907/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGG > SRR4302532.3558415/1‑94 (MQ=60)
GCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGG < SRR4302532.1891558/94‑1 (MQ=60)
CGGGGTGGATAATTTTTAATCTGCCGAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGG > SRR4302532.6117656/1‑94 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGT < SRR4302532.5174791/94‑1 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGT > SRR4302532.629523/1‑94 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGG > SRR4302532.629522/1‑94 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGG > SRR4302532.2245933/1‑94 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTG > SRR4302532.2426756/1‑94 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTG > SRR4302532.1657731/1‑94 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTG < SRR4302532.4313271/94‑1 (MQ=60)
TGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGG > SRR4302532.3380537/1‑94 (MQ=60)
GGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGG > SRR4302532.3061560/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTA < SRR4302532.1057257/94‑1 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTA > SRR4302532.107912/1‑94 (MQ=60)
ATAATTTTTAATCTGCCGAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTA > SRR4302532.5682505/1‑94 (MQ=60)
TAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAA > SRR4302532.5304557/1‑94 (MQ=60)
AATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAAT > SRR4302532.1903240/1‑94 (MQ=60)
ATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCT‑CTCTTCCAGCGAGAGGGTCGGGGTGAGGGTAATT > SRR4302532.5731195/1‑94 (MQ=60)
TTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTT < SRR4302532.1517710/94‑1 (MQ=60)
TTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTT > SRR4302532.3840739/1‑94 (MQ=60)
TTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTT < SRR4302532.4376678/94‑1 (MQ=60)
TTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTT > SRR4302532.190714/1‑94 (MQ=60)
TAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCG > SRR4302532.5218722/1‑94 (MQ=60)
AATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGC < SRR4302532.3649116/94‑1 (MQ=60)
AATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGC > SRR4302532.5410462/1‑94 (MQ=60)
TCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCAC < SRR4302532.5020716/94‑1 (MQ=60)
CTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACC < SRR4302532.637429/94‑1 (MQ=60)
CTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACC > SRR4302532.5450915/1‑94 (MQ=60)
TGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCG < SRR4302532.3228651/94‑1 (MQ=60)
TGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCG > SRR4302532.5200211/1‑94 (MQ=60)
TGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCG < SRR4302532.3835554/94‑1 (MQ=60)
TGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCG > SRR4302532.140209/1‑94 (MQ=60)
CCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTCCCC‑CCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAT < SRR4302532.305393/94‑1 (MQ=60)
CCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAT < SRR4302532.305392/94‑1 (MQ=60)
CCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAT > SRR4302532.4381363/1‑94 (MQ=60)
CCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAT > SRR4302532.6180426/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302532.5362052/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302532.5019178/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302532.3559394/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGCGAGAGGGTCGGGGGGAGGGAAATTTTTTGCACTGATG > SRR4302532.614041/1‑94 (MQ=60)
TAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGCGAGGGTAATTTTTCGCACCGATGC > SRR4302532.2216238/1‑94 (MQ=60)
AAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCT < SRR4302532.6106228/94‑1 (MQ=60)
AGCCGTGTCCCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTG < SRR4302532.2708867/94‑1 (MQ=60)
AGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTG < SRR4302532.616752/94‑1 (MQ=60)
GCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGG > SRR4302532.2180465/1‑94 (MQ=60)
CCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGC < SRR4302532.102154/94‑1 (MQ=60)
CCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGC > SRR4302532.5118269/1‑94 (MQ=60)
CGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCC < SRR4302532.1126205/94‑1 (MQ=60)
CGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCC > SRR4302532.4794361/1‑94 (MQ=60)
TGTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG < SRR4302532.3381250/94‑1 (MQ=60)
GTACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGT > SRR4302532.2523581/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC > SRR4302532.5929955/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCC > SRR4302532.1875468/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCC > SRR4302532.5039906/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGAGAGGGTAATTTTTCGCACCGATGCTGGCCTGCTGCCC > SRR4302532.4944962/1‑94 (MQ=60)
TGTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCT > SRR4302532.1887516/1‑94 (MQ=60)
GTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTC < SRR4302532.4470686/94‑1 (MQ=60)
GTCATTAACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTC > SRR4302532.5366384/1‑94 (MQ=60)
ATTAACATGAGCGCCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCccccc > SRR4302532.3812843/1‑89 (MQ=60)
AACATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCCA > SRR4302532.1044890/1‑94 (MQ=60)
ATGAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtcccccccccccccc > SRR4302532.5687900/1‑79 (MQ=60)
GAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCT < SRR4302532.6157058/94‑1 (MQ=60)
GAGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCT < SRR4302532.5811674/94‑1 (MQ=60)
AGCACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTC < SRR4302532.680991/94‑1 (MQ=60)
CACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑C < SRR4302532.5118200/94‑1 (MQ=60)
ACCGTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CC < SRR4302532.3840516/94‑1 (MQ=60)
CCGTTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCCCCCCCCAACCCCCT‑CCC > SRR4302532.2121071/1‑94 (MQ=60)
GTTT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCcccctcaacccctccccc > SRR4302532.5258741/1‑76 (MQ=60)
TTT‑TCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttccccccccccacccccccccccc > SRR4302532.2467232/1‑69 (MQ=60)
TT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAA > SRR4302532.1230347/1‑94 (MQ=60)
TT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAA > SRR4302532.1230346/1‑94 (MQ=60)
TT‑TCTCCCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAA < SRR4302532.1150255/94‑1 (MQ=60)
ttctccctctcC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTCACCCTCT‑CCCCAAAC > SRR4302532.4519627/12‑94 (MQ=60)
ttctccctctcC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAAC < SRR4302532.3050836/83‑1 (MQ=60)
ctccctctcC‑CTTCCAGGGGGAGGGCCGGGGGGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAACCTCT‑CCCCCAACGG > SRR4302532.2149585/10‑94 (MQ=60)
tccctctcC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCCCACCCccaccccctcccccaaaagg > SRR4302532.1771753/9‑74 (MQ=60)
tccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCCCACCCccaccccccccccccacagg > SRR4302532.476301/9‑74 (MQ=60)
ccctctcC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCcaaccgcg > SRR4302532.4279777/8‑86 (MQ=60)
ccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGGTCCCCccccccccccccccccccccccccccc > SRR4302532.1240901/8‑67 (MQ=60)
CCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACTGATGCTGGCCTGTTCCCCTCACCCCAACCCTCTCCCCCAAAGGGGG > SRR4302532.1887993/1‑94 (MQ=60)
CCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCTTCT‑CCCCAAACGGGGC < SRR4302532.3686021/94‑1 (MQ=60)
CCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGC < SRR4302532.276388/94‑1 (MQ=60)
CCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGC < SRR4302532.3955511/94‑1 (MQ=60)
CCTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGC < SRR4302532.3686020/94‑1 (MQ=60)
CTCTCC‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCTCCTCACCCccaccctcccccccccccccggg > SRR4302532.2733242/1‑71 (MQ=60)
CTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCCAACGGGGCG > SRR4302532.5348086/1‑94 (MQ=60)
CTC‑‑C‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCACACGGGGCGAG > SRR4302532.2354532/1‑94 (MQ=60)
C‑CTTCCAGGGGGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtcccccccccccccccccccccccaccaccggcggggg > SRR4302532.180395/1‑56 (MQ=60)
C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCCCT‑CCCCAAACGGGGGGAGGGG > SRR4302532.4162351/1‑94 (MQ=60)
|
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTT‑TCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGCGAGGGG > NC_000913/3237155‑3237339
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
