Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,237,247 |
+C |
intergenic (+60/‑337) |
ygjT → / → ygjU |
putative transport protein/putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,237,245 | 1 | . | C | 99.2%
| 468.7
/ ‑3.5
| 132 | intergenic (+58/‑339) | ygjT/ygjU | putative transport protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (92/39); total (93/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 |
Only 100 of 161 total aligned reads displayed.
ATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑T‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACGGGG > NC_000913/3237156‑3237332
|
aTTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑cc > 1:313680/1‑93 (MQ=255)
aTTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑cc > 2:2734421/1‑93 (MQ=255)
aTTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑cc > 1:2505665/1‑93 (MQ=255)
ttATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑ccc < 2:1908330/93‑2 (MQ=255)
ttATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑ccc > 2:6211902/1‑92 (MQ=255)
tATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGAGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑ccct < 1:2656131/93‑3 (MQ=255)
aTCGGCATGATAAGCAGCTGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑ccctt > 2:3657107/1‑90 (MQ=255)
aTCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑ccctt > 1:6337102/1‑90 (MQ=255)
aTCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCC‑TGTACCCTGTCATTTACATGAGCACCGTTTTt‑t‑t‑cctct‑cccctc > 2:6077980/1‑89 (MQ=255)
tCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑c‑tccctct‑cccttc > 1:4184904/1‑89 (MQ=255)
ggCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCa > 2:1818321/1‑93 (MQ=255)
ggCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCa < 2:6377895/93‑1 (MQ=255)
gCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAg < 1:1329389/93‑1 (MQ=255)
caggATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAgg < 1:4561186/90‑1 (MQ=255)
cATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAgg > 1:5219946/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGga > 2:4345567/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGga < 1:1361483/93‑1 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGga > 1:866854/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGga < 1:5950295/93‑1 (MQ=255)
gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGCGCACCG‑TTAT‑CTT‑CCTCTCCCTTCCAGGgag > 2:1723108/1‑93 (MQ=255)
gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGgag > 1:2808001/1‑93 (MQ=255)
gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGgag < 2:5038803/93‑1 (MQ=255)
gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGgag > 1:345327/1‑93 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGgaga > 1:345387/1‑93 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGgaga < 1:1885319/93‑1 (MQ=255)
tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGagag < 2:36691/93‑1 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGt < 2:2719633/93‑1 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGt < 2:2691099/93‑1 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TCTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGt > 2:818316/1‑93 (MQ=255)
gcagcGGGGGGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGt > 2:2935072/1‑93 (MQ=255)
cagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTc < 2:1638791/93‑1 (MQ=255)
cagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTc < 2:5529010/93‑1 (MQ=255)
agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCg < 1:5941661/93‑1 (MQ=255)
agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCg < 2:861207/93‑1 (MQ=255)
agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCg < 2:630210/93‑1 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCgg > 1:6400072/1‑93 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCgg > 2:3972790/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCgggg < 1:2768181/93‑1 (MQ=255)
gtgTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGt < 1:1683442/91‑1 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCggggg > 1:2221755/1‑92 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCggggg > 2:837529/1‑92 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGt > 2:6597063/1‑93 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGt < 1:1094257/93‑1 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGt > 1:2291925/1‑93 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTg > 1:4116926/1‑93 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTg > 1:403691/1‑93 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTg > 2:3928500/1‑93 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTg < 2:1112844/93‑1 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTg < 2:4928155/93‑1 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGa < 1:4829293/93‑1 (MQ=255)
ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAgg > 1:3953754/1‑93 (MQ=39)
ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAgg > 2:6522266/1‑93 (MQ=39)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAgggga > 2:605133/1‑91 (MQ=38)
aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTaa > 1:6157216/1‑93 (MQ=38)
tttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtt > 2:171561/1‑93 (MQ=38)
tttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtt > 2:2005182/1‑93 (MQ=38)
ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAttt > 1:6647281/1‑93 (MQ=38)
ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAttt > 1:5895415/1‑93 (MQ=38)
aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGc > 1:1838211/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 2:3232901/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGAGAGGGTAATTTTTCGCAcc > 2:538957/1‑93 (MQ=38)
gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCg > 2:2968238/1‑93 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 1:1035910/1‑93 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 2:522068/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 2:2451415/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:2451835/1‑93 (MQ=38)
aaGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc > 1:861625/1‑93 (MQ=37)
aaGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc > 2:748423/1‑93 (MQ=37)
aaGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc > 2:3410937/1‑93 (MQ=38)
ccGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTgg > 2:1273169/1‑93 (MQ=37)
gtgtACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGcc > 2:232268/1‑93 (MQ=37)
tgtACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt > 2:5480661/1‑93 (MQ=37)
tgtACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt > 1:5051845/1‑93 (MQ=37)
tgtACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt > 1:427826/1‑93 (MQ=37)
tgtACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCt > 1:5598033/1‑93 (MQ=37)
gtACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTg > 1:1285387/1‑93 (MQ=37)
tACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑t > 2:4045072/1‑93 (MQ=38)
tACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑t > 2:3106556/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 2:472910/1‑93 (MQ=37)
ccTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGTGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcc > 2:2020161/1‑93 (MQ=37)
cTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc > 1:2047483/1‑93 (MQ=25)
cTGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCCGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTtcc > 1:6091422/1‑93 (MQ=37)
tGTCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc > 1:3258063/1‑93 (MQ=37)
tCATTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTc > 1:6312543/1‑93 (MQ=25)
gcATTAACATGAGCACCG‑TTTTCC‑C‑CCTCTCCCTTCCAGGGAGACGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTc < 2:1667545/92‑1 (MQ=21)
aTTAACATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTtccccccc > 1:3853377/1‑89 (MQ=25)
cATGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCccccccccccc > 1:3742839/1‑90 (MQ=25)
aTGAGCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGCGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑CTcccccccccccccc > 1:5610048/1‑89 (MQ=21)
gCACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCctc > 1:4272111/1‑93 (MQ=18)
cACCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCCCCCCCACCctct > 1:698968/1‑93 (MQ=18)
aCCG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCtctc > 1:1023340/1‑93 (MQ=18)
ccG‑TTTT‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCCCCCCCCAAcccctcc > 2:5109506/1‑89 (MQ=18)
ttt‑C‑TCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTTCCTCCCCCCCACCCTCTccccca > 1:4756074/1‑91 (MQ=18)
tccctctcccTTCCAGGGAGCGGGTCGGGGCGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCCCGCTAAACCTCTCGCCCAAccg > 1:3082250/3‑91 (MQ=18)
tccctctcccTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACgg > 2:4391017/3‑93 (MQ=255)
tccctctcccTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAAACCTCTCCCCCAACgg > 1:853142/3‑93 (MQ=18)
ccctctcccTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCCCCCCCCCACCCTCCCCCCacacacg > 2:1498877/2‑90 (MQ=18)
ccctctcccTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCCAACggg > 1:5328322/2‑93 (MQ=18)
ccctctcccTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACggg > 1:5465351/2‑93 (MQ=255)
ccctctcccTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACcgg > 1:5396325/2‑93 (MQ=18)
|
ATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCG‑TTTT‑C‑T‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACGGGG > NC_000913/3237156‑3237332
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCAAACGGGGCGAGGG > NC_000913/3237155‑3237338
|
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CC > SRR4302547.319522/1‑94 (MQ=60)
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CC > SRR4302547.2556313/1‑94 (MQ=60)
AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CC > SRR4302547.4459900/1‑94 (MQ=60)
GGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAG > SRR4302547.2669477/1‑94 (MQ=60)
GCATGATAAGCAGCGGGGTGTATAATTTTTAATCTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGG < SRR4302547.6011686/94‑1 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGG < SRR4302547.423783/94‑1 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGG < SRR4302547.1356107/94‑1 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGG > SRR4302547.5327377/1‑94 (MQ=60)
CATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGG > SRR4302547.6188577/1‑94 (MQ=60)
CAGGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGG < SRR4302547.4655548/94‑1 (MQ=60)
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGA > SRR4302547.883439/1‑94 (MQ=60)
TGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAG < SRR4302547.1388801/94‑1 (MQ=60)
TGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAG < SRR4302547.2993701/94‑1 (MQ=60)
TGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAG > SRR4302547.2864195/1‑94 (MQ=60)
TGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAG > SRR4302547.351740/1‑94 (MQ=60)
TGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAG < SRR4302547.6073679/94‑1 (MQ=60)
GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGA > SRR4302547.351802/1‑94 (MQ=60)
GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGA < SRR4302547.3217581/94‑1 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAG < SRR4302547.1922568/94‑1 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGG > SRR4302547.6767231/1‑94 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGG < SRR4302547.870415/94‑1 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGG < SRR4302547.6035717/94‑1 (MQ=60)
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGG < SRR4302547.2396012/94‑1 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTC < SRR4302547.3446105/94‑1 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTC > SRR4302547.2797615/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGG > SRR4302547.6533574/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGG < SRR4302547.6064871/94‑1 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGT > SRR4302547.898764/1‑94 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGT < SRR4302547.2823644/94‑1 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGT > SRR4302547.2338352/1‑94 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGG > SRR4302547.2266516/1‑94 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CCATTCCAGGGAGAGGGTCGGGGG > SRR4302547.4060118/1‑94 (MQ=60)
GTGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTG < SRR4302547.1716582/94‑1 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTG < SRR4302547.1116198/94‑1 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTG > SRR4302547.4200601/1‑94 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTG > SRR4302547.411187/1‑94 (MQ=60)
GGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGG > SRR4302547.1079799/1‑94 (MQ=60)
GTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAG < SRR4302547.4929418/94‑1 (MQ=60)
TGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGG > SRR4302547.1363673/1‑94 (MQ=60)
TGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGG > SRR4302547.4034167/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTA > SRR4302547.1321841/1‑94 (MQ=60)
TAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAA > SRR4302547.6284996/1‑94 (MQ=60)
TTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTT > SRR4302547.6017489/1‑94 (MQ=60)
TTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTT > SRR4302547.6785728/1‑94 (MQ=60)
TAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCG > SRR4302547.4863857/1‑94 (MQ=60)
AATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGC > SRR4302547.2192408/1‑94 (MQ=60)
AATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGC > SRR4302547.1874541/1‑94 (MQ=60)
CCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAT > SRR4302547.1056308/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302547.2501378/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATG > SRR4302547.1772063/1‑94 (MQ=60)
TAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGC > SRR4302547.878091/1‑94 (MQ=60)
GCCGTGTAGCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGG > SRR4302547.6443939/1‑94 (MQ=60)
GTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCT > SRR4302547.5156144/1‑94 (MQ=60)
GTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCT > SRR4302547.435745/1‑94 (MQ=60)
GTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCT > SRR4302547.5713513/1‑94 (MQ=60)
TGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG > SRR4302547.1311276/1‑94 (MQ=60)
GTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGT > SRR4302547.3840627/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC > SRR4302547.2058887/1‑94 (MQ=60)
CCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCTGTTTC > SRR4302547.4298695/1‑94 (MQ=60)
CCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCC > SRR4302547.2088320/1‑94 (MQ=60)
CCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCCGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCC > SRR4302547.6217782/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCC > SRR4302547.3323175/1‑94 (MQ=60)
GTCATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTC > SRR4302547.6443797/1‑94 (MQ=60)
CATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtccccccc > SRR4302547.3931818/1‑86 (MQ=60)
CATTAACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCcccc > SRR4302547.3795935/1‑90 (MQ=60)
ACATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtcccccccccccc > SRR4302547.3819246/1‑81 (MQ=60)
CATGAGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGCGAGGGTAATTTTTCGCACCGATGCTGGCCTGCTCCCCcccccccccc > SRR4302547.5725811/1‑84 (MQ=60)
AGCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC > SRR4302547.4359801/1‑94 (MQ=60)
GCACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCCCCCCCA‑CCCTC‑T > SRR4302547.711888/1‑94 (MQ=60)
CACCGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TC > SRR4302547.1043419/1‑94 (MQ=60)
CGTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCTCCCCCCCA‑ACCTC‑TCCCC > SRR4302547.5333791/1‑94 (MQ=60)
GTTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCCCCCCCCAA‑CCCTC‑TCCCCA > SRR4302547.558008/1‑94 (MQ=60)
TTTTCTCCCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttcctcccccccaccctctccccca > SRR4302547.4854622/1‑69 (MQ=60)
ctccctctcCC‑TTCCAGGGAGCGGGTCGGGGCGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCccgctaaacctctcgcccaaccg > SRR4302547.3143440/10‑71 (MQ=60)
ctccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑ACCTC‑TCCCCCAACGG > SRR4302547.869432/10‑94 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCTCCCCCCAACCCCCC‑CCCCCAAACGG > SRR4302547.554206/9‑94 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCgcctccccccccccccccacccccacccc > SRR4302547.1197394/9‑65 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCCAACGGG > SRR4302547.5438155/9‑94 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCCAACGGG > SRR4302547.835158/9‑94 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCAAACGGG > SRR4302547.5578249/9‑94 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCAAACCGG > SRR4302547.5507816/9‑94 (MQ=60)
tccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCTGTTttccccccccccccccccccccccccacac > SRR4302547.4646047/9‑64 (MQ=60)
ccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtttctcccccccccccccccccccccccccc > SRR4302547.3513863/8‑63 (MQ=60)
ccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCTCACCCCAA‑CCCTC‑TCCCCccacaggg > SRR4302547.4102671/8‑86 (MQ=60)
ccctctcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCTCCCTAA‑CCCTCTTCCCCAACCGGG > SRR4302547.6398142/8‑94 (MQ=60)
CCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCTCCCCCTAA‑CCCCC‑CCCCCCAACCGGGC > SRR4302547.4312124/1‑94 (MQ=60)
CCTCTCCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCAAACCGGGC > SRR4302547.6520137/1‑94 (MQ=60)
TCTCCC‑TTCCAGGGAGAGGCTCGGGGCGAGGGCAATTTTTCGCACCGATGCTGGCCTGTTtttccctccccgaaacactgcacacatggggcga > SRR4302547.6403469/1‑60 (MQ=55)
tcCC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCTCCCCCCCA‑CCCCC‑TCCCCCAACCGGGCGAGG > SRR4302547.479370/3‑94 (MQ=60)
CC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCccccccccaacccctcccccaaccgggggggggg > SRR4302547.2736575/1‑60 (MQ=60)
C‑TTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGTCTGTTtgccttcaaccccacctcgccccccccatcacgcagggg > SRR4302547.5808030/1‑55 (MQ=60)
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AATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CC‑TTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA‑CCCTC‑TCCCCAAACGGGGCGAGGG > NC_000913/3237155‑3237338
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
