Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,013,772	+C	intergenic (‑53/‑246)	ysgA ← / → udp	hypothetical protein/uridine phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,013,770	1	.	C	98.6%	792.9 / 1.9	222	intergenic (‑51/‑248)	ysgA/udp	hypothetical protein/uridine phosphorylase
Reads supporting (aligned to +/- strand): ref base . (0/3); new base C (107/111); total (108/114)
Fisher's exact test for biased strand distribution p-value = 2.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

Only 100 of 235 total aligned reads displayed.

GCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCT  >  NC_000913/4013679‑4013856

  gtcgtcCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑cc                                                                                       >  1:4118910/1‑93 (MQ=255)

  gtcgtcCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑cc                                                                                       >  1:1027680/1‑93 (MQ=255)

   tcgtcCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑ccc                                                                                      <  1:1565057/93‑2 (MQ=255)

    cgtcCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑ccct                                                                                     >  1:3527977/1‑91 (MQ=255)

      tcCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑ccctta                                                                                   <  1:6071822/93‑5 (MQ=255)

      tcCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑ccctta                                                                                   >  2:1351798/1‑89 (MQ=255)

        cGGGGTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑Ttata                                                                                 >  2:2627835/1‑93 (MQ=255)

         ggggTCTGAACGATGGTCGAAGCGAG‑GGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATaa                                                                                >  2:3837211/1‑93 (MQ=255)

         ggggTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATaa                                                                                >  1:3726474/1‑93 (MQ=255)

         ggggTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATaa                                                                                >  1:2534387/1‑93 (MQ=255)

         ggggTCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATaa                                                                                >  2:4146837/1‑93 (MQ=255)

            gTCTGAAGGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATaaaaa                                                                             <  1:3624167/93‑1 (MQ=255)

            gTCGGAACGATGGTCGAAGCTAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATaaaaa                                                                             <  1:296111/93‑1 (MQ=255)

             tCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAAt                                                                            <  2:248708/93‑1 (MQ=255)

             tCTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGGGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAAt                                                                            >  2:2498489/1‑93 (MQ=255)

              cTGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATg                                                                           <  1:674534/93‑1 (MQ=255)

               tGAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGt                                                                          <  2:678197/93‑1 (MQ=255)

                gAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGtt                                                                         <  2:4235838/93‑1 (MQ=255)

                gAACGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGtt                                                                         >  1:3773178/1‑93 (MQ=255)

                  aCGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTgc                                                                       <  1:4967677/93‑1 (MQ=255)

                  aCGATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTgc                                                                       >  1:5892590/1‑93 (MQ=255)

                    gATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTgcgc                                                                     <  2:472333/93‑1 (MQ=255)

                    gATGGTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTgcgc                                                                     >  2:1987909/1‑93 (MQ=255)

                       ggTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAAt                                                                  <  1:4554523/93‑1 (MQ=255)

                       ggTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAAt                                                                  <  1:5600193/93‑1 (MQ=255)

                        gTCGAAGCGAGAAGAG‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGAAAATACCATGGTATTATCCGT‑ACCC‑TTATAAAAAAGTTACGCAATg                                                                 <  2:5463057/93‑1 (MQ=255)

                        gTCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATg                                                                 <  2:5762453/93‑1 (MQ=255)

                         tCGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTACTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGt                                                                >  2:5946744/1‑93 (MQ=255)

                          cGAAGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGtt                                                               <  1:228935/93‑1 (MQ=255)

                             aGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAAc                                                            >  1:2892373/1‑93 (MQ=255)

                             aGCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAAc                                                            <  2:3506314/93‑1 (MQ=255)

                              gCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACt                                                           >  1:4307962/1‑93 (MQ=255)

                              gCGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CCTTTATAAAAATGTTGCGCAATGTTAACt                                                           <  1:1492865/93‑1 (MQ=255)

                               cGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACta                                                          <  1:2704384/93‑1 (MQ=255)

                               cGAG‑AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACta                                                          >  2:865039/1‑93 (MQ=255)

                                gag‑aGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACtat                                                         <  2:109252/93‑1 (MQ=255)

                                gag‑aGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACtat                                                         >  1:2092228/1‑93 (MQ=255)

                                gag‑aGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACtat                                                         <  1:615067/93‑1 (MQ=255)

                                 ag‑agGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACtata                                                        <  1:3346419/93‑1 (MQ=255)

                                 ag‑agGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACtata                                                        >  1:200849/1‑93 (MQ=255)

                                     ggcgaTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTc                                                     <  2:1020556/89‑1 (MQ=255)

                                      gcgaTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCa                                                    <  2:2595023/90‑1 (MQ=255)

                                      gcgaTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCa                                                    <  1:439456/90‑1 (MQ=255)

                                        gaTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGc                                                  >  2:3344283/2‑93 (MQ=255)

                                        gaTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGc                                                  >  1:3443086/2‑93 (MQ=255)

                                        gaTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGc                                                  >  2:1457171/2‑93 (MQ=255)

                                         aTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCa                                                 <  2:376341/93‑1 (MQ=255)

                                         aTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCa                                                 >  2:4985100/1‑93 (MQ=255)

                                         aTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAAGATTTCGCAATGTTAACTATAGTCAGCa                                                 >  2:3319737/1‑93 (MQ=255)

                                          tGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCAt                                                <  1:4022159/93‑1 (MQ=255)

                                           gcagcaGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATg                                               <  2:2556287/93‑1 (MQ=255)

                                            cagcagGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGc                                              >  2:3409330/1‑93 (MQ=255)

                                             agcagGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGca                                             >  2:2426253/1‑93 (MQ=255)

                                              gcagGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGcaa                                            >  1:2611612/1‑93 (MQ=255)

                                               cagGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGcaac                                           <  2:3043951/93‑1 (MQ=255)

                                                 ggTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGcaacaa                                         >  2:5435638/1‑93 (MQ=255)

                                                  gTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ATCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGcaacaat                                        >  2:4764998/1‑92 (MQ=255)

                                                   tGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAAt                                       >  1:1985866/1‑93 (MQ=255)

                                                   tGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAAt                                       >  2:5186794/1‑93 (MQ=255)

                                                    gCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATc                                      <  1:2351324/93‑1 (MQ=255)

                                                       aaTCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATcaca                                   <  2:372811/93‑1 (MQ=255)

                                                       aaTCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATcaca                                   <  1:1122956/93‑1 (MQ=255)

                                                        aTCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACAt                                  >  2:4285500/1‑93 (MQ=255)

                                                         tCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACAtt                                 >  2:4064078/1‑93 (MQ=255)

                                                           cAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGc                               <  2:2309942/93‑1 (MQ=255)

                                                             gATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCt                             >  1:1168141/1‑93 (MQ=255)

                                                             gATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCt                             <  1:2805580/93‑1 (MQ=255)

                                                             gATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCt                             >  2:2685812/1‑93 (MQ=255)

                                                             gATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCt                             >  2:2915871/1‑93 (MQ=255)

                                                                tgttgtgttgTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGaa                          <  2:2275408/93‑1 (MQ=255)

                                                                 gttgtgttgtTGCCATGGTATTCTCCGTGC‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAAt                         <  1:382359/93‑1 (MQ=255)

                                                                  ttgtgttgtTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATc                        <  2:3154288/93‑1 (MQ=255)

                                                                   tgtgttgtTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCg                       <  2:31299/93‑1 (MQ=255)

                                                                    gtgttgtTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCgg                      >  1:3158585/1‑93 (MQ=255)

                                                                    gtgttgtTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCgg                      >  1:4820941/1‑93 (MQ=255)

                                                                     tgttgtTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGc                     >  1:4476270/1‑93 (MQ=255)

                                                                       ttgttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTc                   >  2:3544425/1‑93 (MQ=255)

                                                                       ttgttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTc                   <  1:2493081/93‑1 (MQ=255)

                                                                       ttgttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTc                   >  2:4551867/1‑93 (MQ=255)

                                                                        tgttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCa                  <  2:2430422/93‑1 (MQ=255)

                                                                        tgttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCa                  <  1:2275659/93‑1 (MQ=255)

                                                                        tgttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCa                  <  2:4327639/93‑1 (MQ=255)

                                                                          ttgCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTcctt                >  2:1853211/1‑90 (MQ=255)

                                                                             ccATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCttt             >  2:4631512/1‑93 (MQ=255)

                                                                             ccATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCttt             <  1:5101136/93‑1 (MQ=255)

                                                                                tGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTAt          >  2:1635742/1‑93 (MQ=255)

                                                                                tGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTAt          <  1:54660/93‑1 (MQ=255)

                                                                                 ggTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATg         >  2:5860329/1‑93 (MQ=255)

                                                                                  gTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGc        >  2:5497591/1‑93 (MQ=255)

                                                                                  gTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGc        <  1:2670993/93‑1 (MQ=255)

                                                                                   tATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGATTCGGCTCATCTTTTATGCa       >  1:1758603/1‑93 (MQ=255)

                                                                                   tATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCa       >  2:4948124/1‑93 (MQ=255)

                                                                                   tATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTCAATCGGCTCATCTTTTATGCa       <  1:4014977/93‑1 (MQ=255)

                                                                                     ttCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATgatgt     >  1:4268185/1‑89 (MQ=255)

                                                                                     ttCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCCGCTCATCTTTTATGCAGt     >  1:5316675/1‑93 (MQ=255)

                                                                                      tctcCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTc    <  1:3266891/93‑1 (MQ=255)

                                                                                      tctcCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTc    >  1:2238849/1‑93 (MQ=255)

                                                                                        tcCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCt  >  2:154222/1‑93 (MQ=255)

                                                                                        tcCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCt  >  1:890864/1‑93 (MQ=255)

                                                                                        tcCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGACGTCCt  >  1:5682606/1‑93 (MQ=255)

GCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAG‑AGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCT  >  NC_000913/4013679‑4013856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAATG  >  NC_000913/4013680‑4013864

CGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC                                                                                               >  SRR4302532.1062426/1‑94 (MQ=60)

CGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC                                                                                               >  SRR4302532.4257143/1‑94 (MQ=60)

  TCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑CT                                                                                            >  SRR4302532.3646071/1‑94 (MQ=60)

  TCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑CT                                                                                            <  SRR4302532.2695824/94‑1 (MQ=60)

  TCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑CT                                                                                            <  SRR4302532.1618005/94‑1 (MQ=60)

   CGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CCctt                                                                                            <  SRR4302532.1972166/94‑4 (MQ=60)

   CGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CCctt                                                                                            >  SRR4302532.245117/1‑91 (MQ=60)

     TCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTAT                                                                                          <  SRR4302532.6281521/94‑1 (MQ=60)

     TCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTAT                                                                                          <  SRR4302532.284790/94‑1 (MQ=60)

     TCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTAT                                                                                          >  SRR4302532.3227105/1‑94 (MQ=60)

     GCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTAT                                                                                          <  SRR4302532.626717/94‑1 (MQ=60)

      CCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATA                                                                                         <  SRR4302532.894160/94‑1 (MQ=60)

      CCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATA                                                                                         <  SRR4302532.5162731/94‑1 (MQ=60)

       CGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAA                                                                                        >  SRR4302532.2618937/1‑94 (MQ=60)

       CGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAA                                                                                        >  SRR4302532.3851637/1‑94 (MQ=60)

       CGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAA                                                                                        >  SRR4302532.2359196/1‑94 (MQ=60)

         GGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAA                                                                                      >  SRR4302532.4359971/1‑94 (MQ=60)

          GGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAA                                                                                     >  SRR4302532.4596472/1‑94 (MQ=60)

          GGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAA                                                                                     <  SRR4302532.5725475/94‑1 (MQ=60)

           GTCTGAAGGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAAT                                                                                    <  SRR4302532.3745602/94‑1 (MQ=60)

           GTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAAT                                                                                    <  SRR4302532.3745599/94‑1 (MQ=60)

           GTCGGAACGATGGTCGAAGCTAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAAT                                                                                    <  SRR4302532.306323/94‑1 (MQ=60)

            TCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATG                                                                                   <  SRR4302532.4487686/94‑1 (MQ=60)

             CTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGT                                                                                  <  SRR4302532.697755/94‑1 (MQ=60)

             CTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGT                                                                                  <  SRR4302532.3864065/94‑1 (MQ=60)

              TGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTT                                                                                 >  SRR4302532.3900215/1‑94 (MQ=60)

              TGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATCCTCCGT‑ACCC‑TTATAAAAATGTT                                                                                 <  SRR4302532.2117845/94‑1 (MQ=60)

                AACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGC                                                                               >  SRR4302532.6096658/1‑94 (MQ=60)

                 ACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCG                                                                              <  SRR4302532.4859788/94‑1 (MQ=60)

                 ACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCG                                                                              <  SRR4302532.5138005/94‑1 (MQ=60)

                   GATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCA                                                                            <  SRR4302532.2055750/94‑1 (MQ=60)

                     TGGTCGAAGCGAGAGGCGATGCATCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAAT                                                                          <  SRR4302532.4448233/94‑1 (MQ=60)

                      GGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATG                                                                         <  SRR4302532.4709930/94‑1 (MQ=60)

                      GGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATG                                                                         <  SRR4302532.5794588/94‑1 (MQ=60)

                       GTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGT                                                                        <  SRR4302532.3045970/94‑1 (MQ=60)

                         CGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTA                                                                      <  SRR4302532.236749/94‑1 (MQ=60)

                         CGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTA                                                                      <  SRR4302532.236748/94‑1 (MQ=60)

                           AAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAAC                                                                    <  SRR4302532.5964373/94‑1 (MQ=60)

                           AAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAAC                                                                    >  SRR4302532.2988981/1‑94 (MQ=60)

                           AAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAAC                                                                    <  SRR4302532.11844/94‑1 (MQ=60)

                            AGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACT                                                                   >  SRR4302532.4453611/1‑94 (MQ=60)

                             GCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CCTTTATAAAAATGTTGCGCAATGTTAACTA                                                                  <  SRR4302532.1543228/94‑1 (MQ=60)

                              CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTAT                                                                 >  SRR4302532.2162015/1‑94 (MQ=60)

                              CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTAT                                                                 <  SRR4302532.1391841/94‑1 (MQ=60)

                              CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTAT                                                                 <  SRR4302532.2795273/94‑1 (MQ=60)

                              CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTAT                                                                 >  SRR4302532.1906197/1‑94 (MQ=60)

                               GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATA                                                                >  SRR4302532.3900455/1‑94 (MQ=60)

                               GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATA                                                                >  SRR4302532.3034030/1‑94 (MQ=60)

                               GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATA                                                                <  SRR4302532.636509/94‑1 (MQ=60)

                               GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATA                                                                >  SRR4302532.207706/1‑94 (MQ=60)

                                AGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAG                                                               <  SRR4302532.3458129/94‑1 (MQ=60)

                                AGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAG                                                               <  SRR4302532.3919898/94‑1 (MQ=60)

                                AGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAG                                                               <  SRR4302532.2307035/94‑1 (MQ=60)

                                 GAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGT                                                              <  SRR4302532.4526715/94‑1 (MQ=60)

                                 GAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGT                                                              >  SRR4302532.1538688/1‑94 (MQ=60)

                                    gcgATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAG                                                           <  SRR4302532.454662/91‑1 (MQ=60)

                                    gcgATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAG                                                           <  SRR4302532.454663/91‑1 (MQ=60)

                                     cgATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGC                                                          >  SRR4302532.3558447/3‑94 (MQ=60)

                                     G‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCA                                                         >  SRR4302532.5269776/1‑94 (MQ=60)

                                        TGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATG                                                       >  SRR4302532.3726731/1‑94 (MQ=60)

                                        TGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATG                                                       <  SRR4302532.4157706/94‑1 (MQ=60)

                                         GCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGC                                                      <  SRR4302532.5832087/94‑1 (MQ=60)

                                          CAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCA                                                     >  SRR4302532.4653295/1‑94 (MQ=60)

                                           AGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAA                                                    >  SRR4302532.2698980/1‑94 (MQ=60)

                                            GCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAAC                                                   <  SRR4302532.687306/94‑1 (MQ=60)

                                              AGGTGCAAATCCAGATTGTTGTTTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAGCTATAGTCAGCATGCAGCAA                                                 <  SRR4302532.2192709/94‑1 (MQ=60)

                                              AGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTCC‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAA                                                 <  SRR4302532.5268138/94‑1 (MQ=60)

                                              AGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAA                                                 >  SRR4302532.95486/1‑94 (MQ=60)

                                               GGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAA                                                >  SRR4302532.2407178/1‑94 (MQ=60)

                                                GTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAAT                                               <  SRR4302532.2947108/94‑1 (MQ=60)

                                                GTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAAT                                               >  SRR4302532.2051839/1‑94 (MQ=60)

                                                 TGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATC                                              >  SRR4302532.3278612/1‑94 (MQ=60)

                                                  GCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCA                                             <  SRR4302532.2429773/94‑1 (MQ=60)

                                                   CAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCAC                                            <  SRR4302532.2720637/94‑1 (MQ=60)

                                                     AATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACAT                                          <  SRR4302532.539014/94‑1 (MQ=60)

                                                     AATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACAT                                          <  SRR4302532.2823404/94‑1 (MQ=60)

                                                     AATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACAT                                          <  SRR4302532.1160450/94‑1 (MQ=60)

                                                      ATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATT                                         <  SRR4302532.1613496/94‑1 (MQ=60)

                                                      ATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATT                                         >  SRR4302532.1289743/1‑94 (MQ=60)

                                                      ATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATT                                         <  SRR4302532.2655994/94‑1 (MQ=60)

                                                      ATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATT                                         <  SRR4302532.3584060/94‑1 (MQ=60)

                                                        CCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGC                                       >  SRR4302532.6199161/1‑94 (MQ=60)

                                                        CCAGATTGTTGTGGTGTTGCCAAGGTAGTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGCTAACTATAGTCAGCATGCAACAAATCACATAGC                                       >  SRR4302532.5673156/1‑94 (MQ=60)

                                                          AGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCT                                     >  SRR4302532.1207164/1‑94 (MQ=60)

                                                           GATTGTTGTGTTGTTGCGATGGTATCCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCTCATTGCCTG                                    <  SRR4302532.5618292/94‑1 (MQ=60)

                                                           GATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTG                                    <  SRR4302532.5115540/94‑1 (MQ=60)

                                                           GATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTG                                    <  SRR4302532.4930837/94‑1 (MQ=60)

                                                           GATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTG                                    <  SRR4302532.2899559/94‑1 (MQ=60)

                                                           GATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTG                                    <  SRR4302532.4055618/94‑1 (MQ=60)

                                                              TGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAAT                                 <  SRR4302532.6355117/94‑1 (MQ=60)

                                                              TGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAAT                                 <  SRR4302532.3458973/94‑1 (MQ=60)

                                                               GTTGTGTTGTTGCCATGGTATTCTCCGTGC‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATC                                <  SRR4302532.395720/94‑1 (MQ=60)

                                                               GTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATC                                <  SRR4302532.3089895/94‑1 (MQ=60)

                                                                TTGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCG                               <  SRR4302532.3438942/94‑1 (MQ=60)

                                                                 TGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGG                              <  SRR4302532.5552994/94‑1 (MQ=60)

                                                                 TGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGG                              >  SRR4302532.3263442/1‑94 (MQ=60)

                                                                 TGTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGG                              >  SRR4302532.4986912/1‑94 (MQ=60)

                                                                  GTGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGC                             >  SRR4302532.4628963/1‑94 (MQ=60)

                                                                   TGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCT                            <  SRR4302532.4182238/94‑1 (MQ=60)

                                                                   TGTTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTGAACTATAGTCAGCATGCAACAAATCTCATGGCCTGAATCGGCT                            <  SRR4302532.3233658/94‑1 (MQ=60)

                                                                     TTGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCA                          <  SRR4302532.2576196/94‑1 (MQ=60)

                                                                      TGTTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCAT                         <  SRR4302532.2351179/94‑1 (MQ=60)

                                                                        TTGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCT                       <  SRR4302532.2588854/94‑1 (MQ=60)

                                                                         TGCCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTT                      >  SRR4302532.4153985/1‑94 (MQ=60)

                                                                           CCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTT                    <  SRR4302532.5276517/94‑1 (MQ=60)

                                                                           CCATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTCT                    >  SRR4302532.3768636/1‑94 (MQ=60)

                                                                            CATGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTA                   >  SRR4302532.1805328/1‑94 (MQ=60)

                                                                             ATGGTATTATCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTAT                  >  SRR4302532.2784875/1‑94 (MQ=60)

                                                                              TGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATG                 <  SRR4302532.2345983/94‑1 (MQ=60)

                                                                              TGGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATG                 <  SRR4302532.56609/94‑1 (MQ=60)

                                                                               GGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGC                <  SRR4302532.771826/94‑1 (MQ=60)

                                                                               GGTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGC                >  SRR4302532.3428052/1‑94 (MQ=60)

                                                                                GTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGATTCGGCTCATCTTTTATGCA               >  SRR4302532.1817617/1‑94 (MQ=60)

                                                                                GTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCA               <  SRR4302532.2760639/94‑1 (MQ=60)

                                                                                GTATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCA               >  SRR4302532.6126630/1‑94 (MQ=60)

                                                                                 TATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAG              >  SRR4302532.4223967/1‑94 (MQ=60)

                                                                                 TATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTCAATCGGCTCATCTTTTATGCAG              <  SRR4302532.4150262/94‑1 (MQ=60)

                                                                                  ATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGatgt             >  SRR4302532.4411886/1‑90 (MQ=60)

                                                                                  ATTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCCGCTCATCTTTTATGCAGT             >  SRR4302532.5500629/1‑94 (MQ=60)

                                                                                   TTCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTC            >  SRR4302532.2313146/1‑94 (MQ=60)

                                                                                    TCTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCC           <  SRR4302532.3375543/94‑1 (MQ=60)

                                                                                     CTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCT          >  SRR4302532.769054/1‑94 (MQ=60)

                                                                                     CTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCT          >  SRR4302532.921299/1‑94 (MQ=60)

                                                                                     CTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCT          >  SRR4302532.1156653/1‑94 (MQ=60)

                                                                                     CTCCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGACGTCCT          >  SRR4302532.5880981/1‑94 (MQ=60)

                                                                                       CCGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGC        >  SRR4302532.4095203/1‑94 (MQ=60)

                                                                                        CGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCA       <  SRR4302532.1697421/94‑1 (MQ=60)

                                                                                        CGT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCA       >  SRR4302532.4915200/1‑94 (MQ=60)

                                                                                         GT‑ACCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAG      >  SRR4302532.5549148/1‑94 (MQ=60)

                                                                                            acCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAA    >  SRR4302532.698952/3‑94 (MQ=60)

                                                                                            acCC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAA    <  SRR4302532.3614765/92‑1 (MQ=60)

                                                                                            C‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAAT   <  SRR4302532.1554115/94‑1 (MQ=60)

                                                                                            C‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAAT   >  SRR4302532.747088/1‑94 (MQ=60)

                                                                                              CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAATG  >  SRR4302532.429261/1‑94 (MQ=60)

CGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CC‑TTATAAAAATGTTGCGCAATGTTAACTATAGTCAGCATGCAACAAATCACATTGCCTGAATCGGCTCATCTTTTATGCAGTCCTGCAGAATG  >  NC_000913/4013680‑4013864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`