Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,251,414 G→A A379T (GCA→ACA)  b1201 → putative sensor‑type regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,251,4140GA100.0% 837.9 / NA 215A379T (GCA→ACA) b1201putative sensor‑type regulator
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (114/101);  total (114/101)

Only 100 of 221 total aligned reads displayed.

CGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGA  >  NC_000913/1251324‑1251502
                                                                                          |                                                                                        
cgcAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACa                                                                                        <  2:2568658/93‑1 (MQ=255)
 gcAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAg                                                                                       <  1:1325499/93‑1 (MQ=255)
 gcAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAg                                                                                       <  1:2495322/93‑1 (MQ=255)
   aGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGt                                                                                     <  2:5867254/93‑1 (MQ=255)
   aGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGt                                                                                     <  2:3176407/93‑1 (MQ=255)
    gTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTc                                                                                    >  2:4743068/1‑93 (MQ=255)
      aGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCt                                                                                  <  1:3813144/93‑1 (MQ=255)
        cTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTta                                                                                >  2:2423537/1‑93 (MQ=255)
        cTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTta                                                                                >  1:5204696/1‑93 (MQ=255)
         tttCCTGTCCTGCTTTGTGGAGAAGAGGGGGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtat                                                                               >  1:5964526/1‑93 (MQ=255)
         tttCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtat                                                                               >  2:6358113/1‑93 (MQ=255)
         tttCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtat                                                                               <  2:5480615/93‑1 (MQ=255)
          ttCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtata                                                                              <  1:203313/93‑1 (MQ=255)
          ttCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtata                                                                              >  1:5645241/1‑93 (MQ=255)
           tcctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTatat                                                                             <  1:4482335/93‑1 (MQ=255)
            cctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATc                                                                            >  1:241006/1‑93 (MQ=255)
            cctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATc                                                                            >  1:3200640/1‑93 (MQ=255)
             ctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCg                                                                           >  1:91214/1‑93 (MQ=255)
             ctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCg                                                                           >  2:364382/1‑93 (MQ=255)
              tgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGc                                                                          <  1:4214064/93‑1 (MQ=255)
              tgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGc                                                                          <  1:3653616/93‑1 (MQ=255)
               gtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGcc                                                                         <  2:1141139/93‑1 (MQ=255)
                tcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCg                                                                        >  2:3517686/1‑93 (MQ=255)
                   tgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCa                                                                     <  1:5328533/93‑1 (MQ=255)
                   tgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCa                                                                     >  2:1795356/1‑93 (MQ=255)
                    gCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCaa                                                                    >  2:3113377/1‑93 (MQ=255)
                      tttGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAAtt                                                                  <  1:4649493/93‑1 (MQ=255)
                         gtgGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATtgtg                                                               >  2:6509850/1‑93 (MQ=255)
                         gtgGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATtgtg                                                               >  2:1354576/1‑93 (MQ=255)
                          tgGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGa                                                              >  1:5267270/1‑93 (MQ=255)
                          tgGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGa                                                              <  2:2245851/93‑1 (MQ=255)
                           ggAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAg                                                             <  1:3957194/93‑1 (MQ=255)
                           ggAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAg                                                             <  1:3005779/93‑1 (MQ=255)
                           ggAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAg                                                             >  2:2060291/1‑93 (MQ=255)
                            gagaAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGt                                                            <  1:2222258/93‑1 (MQ=255)
                              gaagaGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTta                                                          >  2:2837569/1‑93 (MQ=255)
                                agagGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTtata                                                        >  1:553363/1‑93 (MQ=255)
                                 gagGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTatat                                                       <  1:3317128/93‑1 (MQ=255)
                                       gTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAt                                                 <  2:5997876/93‑1 (MQ=255)
                                       gTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAt                                                 <  1:2066051/93‑1 (MQ=255)
                                         gggCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgc                                               <  1:3470719/93‑1 (MQ=255)
                                          ggCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgct                                              <  2:3436801/93‑1 (MQ=255)
                                          ggCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgct                                              <  1:6245067/93‑1 (MQ=255)
                                          ggCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgct                                              <  2:5712505/93‑1 (MQ=255)
                                             aaGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcg                                           >  1:155596/1‑93 (MQ=255)
                                             aaGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcg                                           >  1:3750220/1‑93 (MQ=255)
                                             aaGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcg                                           >  2:3250630/1‑93 (MQ=255)
                                              aGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcgc                                          >  2:5163127/1‑93 (MQ=255)
                                              aGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcgc                                          >  1:11025/1‑93 (MQ=255)
                                              aGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcgc                                          <  2:4101584/93‑1 (MQ=255)
                                              aGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCATTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcgc                                          >  1:6340629/1‑93 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                         <  2:3313130/93‑1 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                         >  1:3086347/1‑93 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                         >  2:2723489/1‑93 (MQ=255)
                                                 cACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTgg                                       >  1:54631/1‑93 (MQ=255)
                                                 cACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATACCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTgg                                       <  2:4380515/93‑1 (MQ=255)
                                                  aCTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGc                                      <  1:315106/93‑1 (MQ=255)
                                                  aCTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGc                                      >  2:3873495/1‑93 (MQ=255)
                                                   cTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCg                                     <  2:5235252/93‑1 (MQ=255)
                                                    tGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCgg                                    >  1:267196/1‑93 (MQ=255)
                                                     gCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGga                                   >  1:1241084/1‑93 (MQ=255)
                                                     gCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGga                                   >  1:2856180/1‑93 (MQ=255)
                                                      cTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaa                                  >  2:1299886/1‑93 (MQ=255)
                                                      cTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaa                                  <  1:2700273/93‑1 (MQ=255)
                                                       tAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaag                                 >  1:4093849/1‑93 (MQ=255)
                                                       tAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaag                                 >  1:1896075/1‑93 (MQ=255)
                                                        aaGTCAGGCACTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaaga                                >  1:3633691/1‑93 (MQ=255)
                                                        aaGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaaga                                <  2:2649451/93‑1 (MQ=255)
                                                          gTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAt                              >  2:1627996/1‑93 (MQ=255)
                                                            cAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAttt                            <  1:6582542/93‑1 (MQ=255)
                                                            cAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAttt                            >  2:6177008/1‑93 (MQ=255)
                                                            cAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAttt                            >  2:3448843/1‑93 (MQ=255)
                                                             aGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTa                           <  1:4854169/93‑1 (MQ=255)
                                                             aGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTa                           >  1:4885853/1‑93 (MQ=255)
                                                               gCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGTAGAATTTAtt                         <  2:3031007/93‑1 (MQ=255)
                                                               gCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTAtt                         <  1:5676375/93‑1 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt                      >  2:6057666/1‑93 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt                      >  1:4950178/1‑93 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt                      <  2:3675802/93‑1 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt                      <  2:1687414/93‑1 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGCGATGCTGCCCTGGCGGAAGAATTTATtggt                      >  1:4045225/1‑93 (MQ=255)
                                                                   ttCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggtg                     <  1:1442408/93‑1 (MQ=255)
                                                                   ttCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggtg                     <  1:6599370/93‑1 (MQ=255)
                                                                    tCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggtgg                    >  1:5133446/1‑93 (MQ=255)
                                                                    tCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGCGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggtgg                    >  1:5060521/1‑93 (MQ=255)
                                                                      aTAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCg                  <  2:2986171/93‑1 (MQ=255)
                                                                        aaTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAt                >  2:3407926/1‑93 (MQ=255)
                                                                         aTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATc               <  1:5428139/93‑1 (MQ=255)
                                                                          tGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCg              >  1:420148/1‑93 (MQ=255)
                                                                             aaGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCAc           <  1:4310251/93‑1 (MQ=255)
                                                                              agcgagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACg          <  2:5521395/93‑1 (MQ=255)
                                                                              agcgagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACg          >  2:636497/1‑93 (MQ=255)
                                                                              agcgagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATAGCACg          >  2:6634394/1‑93 (MQ=255)
                                                                                  agcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACa      >  2:1174840/1‑93 (MQ=255)
                                                                                   gcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACaa     <  1:6279443/93‑1 (MQ=255)
                                                                                   gcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACaa     >  2:3193638/1‑93 (MQ=255)
                                                                                    cgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAAt    >  2:1251935/1‑93 (MQ=255)
                                                                                      tgctacAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGa  <  1:3380108/93‑1 (MQ=255)
                                                                                      tgctacAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGa  >  2:1099703/1‑93 (MQ=255)
                                                                                      tgctacAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGa  >  1:1865345/1‑93 (MQ=255)
                                                                                          |                                                                                        
CGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGA  >  NC_000913/1251324‑1251502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAATG  >  NC_000913/1251323‑1251507
                                                                                           |                                                                                             
GCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACA                                                                                             <  SRR4302547.3724665/94‑1 (MQ=60)
  GCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGG                                                                                           <  SRR4302547.2545741/94‑1 (MQ=60)
  GCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGG                                                                                           <  SRR4302547.1352142/94‑1 (MQ=60)
       AGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTT                                                                                      <  SRR4302547.3890849/94‑1 (MQ=60)
       AGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTT                                                                                      >  SRR4302547.2101239/1‑94 (MQ=60)
        GCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTA                                                                                     >  SRR4302547.5311798/1‑94 (MQ=60)
         CTTTCCTGTCCTGCTTTGTGGAGAAGAGGGGGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTAT                                                                                    >  SRR4302547.6088224/1‑94 (MQ=60)
          TTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATA                                                                                   >  SRR4302547.5761765/1‑94 (MQ=60)
          TTTCCTGTCCTGCTTTGGGGAGAAGAGGGCGTGGGCAAAGGACTGCTTAGTCAGGCCATTTATAATGAAAGCGAGCGTGCTACAGGGCCTTATA                                                                                   >  SRR4302547.599833/1‑94 (MQ=60)
           TTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATAT                                                                                  <  SRR4302547.6466566/94‑1 (MQ=60)
           TTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATAT                                                                                  <  SRR4302547.207116/94‑1 (MQ=60)
            TCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATC                                                                                 >  SRR4302547.3264453/1‑94 (MQ=60)
            TCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATC                                                                                 <  SRR4302547.4574936/94‑1 (MQ=60)
            TCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATC                                                                                 <  SRR4302547.2726545/94‑1 (MQ=60)
            TCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATC                                                                                 >  SRR4302547.245518/1‑94 (MQ=60)
             CCTGTCCTGTTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCG                                                                                <  SRR4302547.5102291/94‑1 (MQ=60)
             CCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCG                                                                                >  SRR4302547.92909/1‑94 (MQ=60)
             CCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCG                                                                                >  SRR4302547.5431056/1‑94 (MQ=60)
              CTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGC                                                                               >  SRR4302547.4300599/1‑94 (MQ=60)
               TGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCC                                                                              <  SRR4302547.3728145/94‑1 (MQ=60)
               TGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCC                                                                              >  SRR4302547.4821553/1‑94 (MQ=60)
               TGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCC                                                                              <  SRR4302547.4300072/94‑1 (MQ=60)
                GTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCG                                                                             <  SRR4302547.322943/94‑1 (MQ=60)
                   CTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCA                                                                          >  SRR4302547.1306911/1‑94 (MQ=60)
                   CTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCA                                                                          >  SRR4302547.5264551/1‑94 (MQ=60)
                    TGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAA                                                                         <  SRR4302547.5438370/94‑1 (MQ=60)
                    TGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAA                                                                         >  SRR4302547.3605865/1‑94 (MQ=60)
                    TGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAA                                                                         >  SRR4302547.3828618/1‑94 (MQ=60)
                     GCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAAT                                                                        >  SRR4302547.6646045/1‑94 (MQ=60)
                       TTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTG                                                                      <  SRR4302547.4745807/94‑1 (MQ=60)
                       TTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTG                                                                      >  SRR4302547.3497272/1‑94 (MQ=60)
                       TTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTG                                                                      <  SRR4302547.5449245/94‑1 (MQ=60)
                        TTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGT                                                                     <  SRR4302547.3784502/94‑1 (MQ=60)
                        TTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGT                                                                     <  SRR4302547.2940539/94‑1 (MQ=60)
                         TGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTG                                                                    <  SRR4302547.1412509/94‑1 (MQ=60)
                          GTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGA                                                                   >  SRR4302547.5375774/1‑94 (MQ=60)
                            GGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGT                                                                 <  SRR4302547.4037690/94‑1 (MQ=60)
                            GGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGT                                                                 <  SRR4302547.3065555/94‑1 (MQ=60)
                             GAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTT                                                                <  SRR4302547.2267027/94‑1 (MQ=60)
                             GAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTT                                                                >  SRR4302547.6791971/1‑94 (MQ=60)
                              AGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTA                                                               <  SRR4302547.2928989/94‑1 (MQ=60)
                              AGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTA                                                               >  SRR4302547.6113567/1‑94 (MQ=60)
                                AAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATA                                                             >  SRR4302547.2111286/1‑94 (MQ=60)
                                AAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATA                                                             >  SRR4302547.563328/1‑94 (MQ=60)
                                AAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATA                                                             <  SRR4302547.2477878/94‑1 (MQ=60)
                                 AGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATAT                                                            >  SRR4302547.4220002/1‑94 (MQ=60)
                                  GAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATG                                                           <  SRR4302547.3384062/94‑1 (MQ=60)
                                  GAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATG                                                           <  SRR4302547.3436720/94‑1 (MQ=60)
                                   AGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGG                                                          <  SRR4302547.1932995/94‑1 (MQ=60)
                                    gggcgtgagaaagaaACTGCTAAGGCAGGCAATTGATAAAGAAAGCAAGCGTGCTAGAGATCATTATATCGCCGTCAATTGTGAGTTATATGGT                                                         <  SRR4302547.60745/79‑1 (MQ=37)
                                    GGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGT                                                         <  SRR4302547.2815936/94‑1 (MQ=60)
                                        GTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATG                                                     >  SRR4302547.112555/1‑94 (MQ=60)
                                        GTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATG                                                     <  SRR4302547.2107279/94‑1 (MQ=60)
                                          GGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCT                                                   <  SRR4302547.3541500/94‑1 (MQ=60)
                                          GGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCT                                                   >  SRR4302547.4127631/1‑94 (MQ=60)
                                           GGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTG                                                  <  SRR4302547.6374796/94‑1 (MQ=60)
                                           GGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTG                                                  <  SRR4302547.3147286/94‑1 (MQ=60)
                                            GCAAGGCGCTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGCCAATTGTGAGTTATATGGTGATGCTGC                                                 <  SRR4302547.4627602/94‑1 (MQ=60)
                                             CAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCG                                                >  SRR4302547.158449/1‑94 (MQ=60)
                                             CAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCG                                                >  SRR4302547.3826761/1‑94 (MQ=60)
                                             CAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCG                                                >  SRR4302547.524757/1‑94 (MQ=60)
                                             CAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCG                                                <  SRR4302547.3292812/94‑1 (MQ=60)
                                              AAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGC                                               >  SRR4302547.11225/1‑94 (MQ=60)
                                              AAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGC                                               >  SRR4302547.1983299/1‑94 (MQ=60)
                                              AAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGC                                               >  SRR4302547.4752798/1‑94 (MQ=60)
                                              AAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCATTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGC                                               >  SRR4302547.6472662/1‑94 (MQ=60)
                                               AGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCT                                              >  SRR4302547.3147591/1‑94 (MQ=60)
                                                GGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCCTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTG                                             >  SRR4302547.727615/1‑94 (MQ=60)
                                                 GCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGG                                            >  SRR4302547.1561207/1‑94 (MQ=60)
                                                 GCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGG                                            >  SRR4302547.55660/1‑94 (MQ=60)
                                                 GCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGG                                            <  SRR4302547.3997256/94‑1 (MQ=60)
                                                   ACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCG                                          >  SRR4302547.6311779/1‑94 (MQ=60)
                                                   ACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCG                                          <  SRR4302547.320981/94‑1 (MQ=60)
                                                   ACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCG                                          <  SRR4302547.6729910/94‑1 (MQ=60)
                                                    CTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGG                                         >  SRR4302547.4178216/1‑94 (MQ=60)
                                                    CTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGG                                         >  SRR4302547.6392341/1‑94 (MQ=60)
                                                    CTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGG                                         >  SRR4302547.272196/1‑94 (MQ=60)
                                                     TGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGA                                        >  SRR4302547.2913250/1‑94 (MQ=60)
                                                     TGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGA                                        <  SRR4302547.4509085/94‑1 (MQ=60)
                                                     TGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGA                                        >  SRR4302547.1266145/1‑94 (MQ=60)
                                                       CTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAG                                      >  SRR4302547.4177096/1‑94 (MQ=60)
                                                       CTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAG                                      >  SRR4302547.1933569/1‑94 (MQ=60)
                                                       CTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAG                                      <  SRR4302547.3708477/94‑1 (MQ=60)
                                                       CTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAG                                      <  SRR4302547.2754470/94‑1 (MQ=60)
                                                        TAAGTCAGGCACTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGA                                     >  SRR4302547.3707811/1‑94 (MQ=60)
                                                             CAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTA                                >  SRR4302547.4987067/1‑94 (MQ=60)
                                                             CAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTA                                >  SRR4302547.4964373/1‑94 (MQ=60)
                                                             CAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTA                                <  SRR4302547.6719616/94‑1 (MQ=60)
                                                              AGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTAT                               <  SRR4302547.5762733/94‑1 (MQ=60)
                                                              AGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTAT                               <  SRR4302547.4954742/94‑1 (MQ=60)
                                                               GGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATT                              >  SRR4302547.5372400/1‑94 (MQ=60)
                                                                GCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTG                             <  SRR4302547.1773982/94‑1 (MQ=60)
                                                                GCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTG                             <  SRR4302547.5172014/94‑1 (MQ=60)
                                                                GCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTG                             <  SRR4302547.5793584/94‑1 (MQ=60)
                                                                GCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTG                             <  SRR4302547.565782/94‑1 (MQ=60)
                                                                  AATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGT                           >  SRR4302547.5052675/1‑94 (MQ=60)
                                                                  AATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGCGATGCTGCCCTGGCGGAAGAATTTATTGGT                           >  SRR4302547.4127367/1‑94 (MQ=60)
                                                                    TTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGG                         <  SRR4302547.1471246/94‑1 (MQ=60)
                                                                    TTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGG                         <  SRR4302547.244673/94‑1 (MQ=60)
                                                                    TTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGG                         <  SRR4302547.6736744/94‑1 (MQ=60)
                                                                    TTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGG                         >  SRR4302547.5239219/1‑94 (MQ=60)
                                                                    TTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGG                         <  SRR4302547.4998065/94‑1 (MQ=60)
                                                                    TTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGCGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGG                         >  SRR4302547.5164964/1‑94 (MQ=60)
                                                                        TAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAT                     >  SRR4302547.5542082/1‑94 (MQ=60)
                                                                        TAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAT                     >  SRR4302547.5547964/1‑94 (MQ=60)
                                                                        TAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAT                     <  SRR4302547.4090002/94‑1 (MQ=60)
                                                                         AATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATC                    <  SRR4302547.1762933/94‑1 (MQ=60)
                                                                          ATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCG                   <  SRR4302547.5540375/94‑1 (MQ=60)
                                                                          ATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCG                   >  SRR4302547.427942/1‑94 (MQ=60)
                                                                             AAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCAC                >  SRR4302547.3416676/1‑94 (MQ=60)
                                                                              AAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACG               >  SRR4302547.262700/1‑94 (MQ=60)
                                                                              AAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACG               <  SRR4302547.4398916/94‑1 (MQ=60)
                                                                                GCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGA             <  SRR4302547.2318614/94‑1 (MQ=60)
                                                                                  GAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACA           >  SRR4302547.3784910/1‑94 (MQ=60)
                                                                                   AGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAA          <  SRR4302547.5592575/94‑1 (MQ=60)
                                                                                   AGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAA          >  SRR4302547.4287776/1‑94 (MQ=60)
                                                                                    GCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAAT         <  SRR4302547.6409909/94‑1 (MQ=60)
                                                                                      GTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGA       >  SRR4302547.5996046/1‑94 (MQ=60)
                                                                                      GTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGA       >  SRR4302547.1902184/1‑94 (MQ=60)
                                                                                      GTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGA       >  SRR4302547.3201389/1‑94 (MQ=60)
                                                                                       TGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAA      <  SRR4302547.3448797/94‑1 (MQ=60)
                                                                                        GCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAA     >  SRR4302547.3266418/1‑94 (MQ=60)
                                                                                         CTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAA    >  SRR4302547.5881027/1‑94 (MQ=60)
                                                                                         CTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAA    >  SRR4302547.4562448/1‑94 (MQ=60)
                                                                                         CTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAA    <  SRR4302547.371150/94‑1 (MQ=60)
                                                                                           ACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAATG  <  SRR4302547.6120319/94‑1 (MQ=60)
                                                                                           ACAGGGCCTTATATCGCCGTCCATTGTGAGTTATATGGCGATGGTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGGAAATG  >  SRR4302547.1777643/1‑94 (MQ=60)
                                                                                           |                                                                                             
GCGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAAAATG  >  NC_000913/1251323‑1251507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑