Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,790,609 G→A D239D (GAC→GAT)  htrL ← HtrL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,790,6090GA100.0% 815.9 / NA 209D239D (GAC→GAT) htrLHtrL
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (99/110);  total (99/110)

Only 100 of 213 total aligned reads displayed.

GCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGGTCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAAC  >  NC_000913/3790519‑3790698
                                                                                          |                                                                                         
gcGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATc                                                                                         >  2:2666400/1‑93 (MQ=255)
gcGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATc                                                                                         >  2:4254018/1‑93 (MQ=255)
gcGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATc                                                                                         >  2:6571830/1‑93 (MQ=255)
 cGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCa                                                                                        >  2:5148622/1‑93 (MQ=255)
  gAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCAt                                                                                       >  2:4017856/1‑93 (MQ=255)
   aaaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGatcatc                                                                                      <  2:4285560/93‑1 (MQ=255)
    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     >  2:1418431/1‑93 (MQ=255)
    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     <  1:5545247/93‑1 (MQ=255)
    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     >  2:3613941/1‑93 (MQ=255)
    aaCAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCg                                                                                     >  2:4909069/1‑93 (MQ=255)
      cAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTc                                                                                   <  2:731845/93‑1 (MQ=255)
        aaTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCca                                                                                 >  2:88264/1‑93 (MQ=255)
         aTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCcac                                                                                >  1:114066/1‑93 (MQ=255)
         aTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCcac                                                                                <  2:5218236/93‑1 (MQ=255)
         aTCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCcac                                                                                >  1:72275/1‑93 (MQ=255)
           cGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACaa                                                                              <  2:3168109/93‑1 (MQ=255)
            gAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAAt                                                                             >  1:5431623/1‑93 (MQ=255)
            gAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAAt                                                                             <  1:4292180/93‑1 (MQ=255)
              aCCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGt                                                                           >  1:2232407/1‑93 (MQ=255)
                cATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGtta                                                                         <  2:6010566/93‑1 (MQ=255)
                  ttttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatt                                                                       <  1:6309266/93‑1 (MQ=255)
                   tttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatta                                                                      <  2:657246/93‑1 (MQ=255)
                   tttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatta                                                                      <  1:2521151/93‑1 (MQ=255)
                   tttCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGttatta                                                                      >  1:4104958/1‑93 (MQ=255)
                      ccTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTAttt                                                                   <  2:3581926/93‑1 (MQ=255)
                      ccTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTAttt                                                                   >  2:1917546/1‑93 (MQ=255)
                       ctctCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTa                                                                  <  1:2681441/93‑1 (MQ=255)
                       ctctCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTa                                                                  >  1:6069910/1‑93 (MQ=255)
                         ctcCCCAGATAGTTTAGGTTGAAGATATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:5657134/93‑1 (MQ=255)
                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  2:1765766/93‑1 (MQ=255)
                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:136385/93‑1 (MQ=255)
                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:3248416/93‑1 (MQ=255)
                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                >  2:6213265/1‑93 (MQ=255)
                         ctcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgt                                                                <  1:1194117/93‑1 (MQ=255)
                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               <  2:2084111/93‑1 (MQ=255)
                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  1:1403200/1‑93 (MQ=255)
                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  2:5059193/1‑93 (MQ=255)
                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  1:2027143/1‑93 (MQ=255)
                          tcCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtg                                                               >  1:3041519/1‑93 (MQ=255)
                           ccccAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAgtgt                                                              >  1:635279/1‑93 (MQ=255)
                             ccAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTa                                                            <  2:6264398/93‑1 (MQ=255)
                             ccAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTa                                                            >  2:1968707/1‑93 (MQ=255)
                               aGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAtt                                                          <  2:3744724/93‑1 (MQ=255)
                                gATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAttt                                                         <  2:2211567/93‑1 (MQ=255)
                                  tAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAttttt                                                       <  1:3764956/93‑1 (MQ=255)
                                  tAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAttttt                                                       >  2:5536958/1‑93 (MQ=255)
                                   aGTTTAGGTTGAAGAGATCGGGGCGTTTGTACTAGCACATGACAAACATGCCCTGATCCTCGTCCACAATGTTATTATTTAGTGTTAtttttt                                                      >  1:1145672/1‑93 (MQ=255)
                                   aGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTAtttttt                                                      <  1:1600809/93‑1 (MQ=255)
                                    gTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTg                                                     >  2:3086810/1‑93 (MQ=255)
                                     tttAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGa                                                    <  1:4766559/93‑1 (MQ=255)
                                       tAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACt                                                  <  2:1050527/93‑1 (MQ=255)
                                       tAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACt                                                  <  1:6130138/93‑1 (MQ=255)
                                         ggTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACttt                                                >  2:2950921/1‑93 (MQ=255)
                                            tGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCa                                             >  2:3271236/1‑93 (MQ=255)
                                            tGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCa                                             <  1:5878025/93‑1 (MQ=255)
                                             gAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAg                                            >  1:6473256/1‑93 (MQ=255)
                                               agagATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGaa                                          >  1:1521644/1‑93 (MQ=255)
                                                 agaTCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACt                                        <  1:2934117/93‑1 (MQ=255)
                                                 agaTCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACt                                        <  2:842688/93‑1 (MQ=255)
                                                     cGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAtt                                    <  1:846326/93‑1 (MQ=255)
                                                      ggggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAttt                                   >  2:1647687/1‑93 (MQ=255)
                                                      ggggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAttt                                   <  2:5589869/93‑1 (MQ=255)
                                                       gggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTta                                  >  2:3510991/1‑93 (MQ=255)
                                                       gggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTta                                  >  2:470195/1‑93 (MQ=255)
                                                        ggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtat                                 >  1:3107048/1‑93 (MQ=255)
                                                        ggCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtat                                 >  2:3778803/1‑93 (MQ=255)
                                                         gCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtata                                <  2:6300552/93‑1 (MQ=255)
                                                         gCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTtata                                >  1:3567716/1‑93 (MQ=255)
                                                          cGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAg                               <  2:6386084/93‑1 (MQ=255)
                                                           gTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGa                              >  2:2281320/1‑93 (MQ=255)
                                                           gTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGa                              >  1:6216709/1‑93 (MQ=255)
                                                            tttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGaa                             >  2:1958572/1‑93 (MQ=255)
                                                            tttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGaa                             >  1:2391977/1‑93 (MQ=255)
                                                             ttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAt                            >  2:2532863/1‑93 (MQ=255)
                                                             ttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAt                            <  2:6514139/93‑1 (MQ=255)
                                                             ttGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAt                            >  1:3143980/1‑93 (MQ=255)
                                                                   tAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTc                      <  2:2588040/93‑1 (MQ=255)
                                                                   tAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTc                      >  1:3818147/1‑93 (MQ=255)
                                                                    aGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTcc                     >  1:2072004/1‑93 (MQ=255)
                                                                    aGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTcc                     <  2:2436754/93‑1 (MQ=255)
                                                                     gCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCa                    <  1:5038979/93‑1 (MQ=255)
                                                                     gCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCa                    <  2:1871097/93‑1 (MQ=255)
                                                                      cacaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAt                   <  2:2828940/93‑1 (MQ=255)
                                                                      cacaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAt                   <  2:6177171/93‑1 (MQ=255)
                                                                       acaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAtt                  >  1:4598860/1‑93 (MQ=255)
                                                                       acaTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAtt                  <  2:5931360/93‑1 (MQ=255)
                                                                         aTGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTa                >  2:4604432/1‑93 (MQ=255)
                                                                           gACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATg              <  2:3819125/93‑1 (MQ=255)
                                                                           gACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATg              <  2:69870/93‑1 (MQ=255)
                                                                            aCAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGc             >  1:2948873/1‑93 (MQ=255)
                                                                            aCAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGc             <  1:4837082/93‑1 (MQ=255)
                                                                             cAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCt            <  2:3951273/93‑1 (MQ=255)
                                                                             cAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCt            <  1:4959867/93‑1 (MQ=255)
                                                                             cAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCt            <  1:1706219/93‑1 (MQ=255)
                                                                                aaaTGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCtgtg         >  1:1446739/1‑93 (MQ=255)
                                                                                  aTGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGaa       >  1:2721068/1‑93 (MQ=255)
                                                                                  aTGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGaa       <  1:3411408/93‑1 (MQ=255)
                                                                                   tGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAAc      <  2:3992668/93‑1 (MQ=255)
                                                                                      ccTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACcaa   <  2:1001092/93‑1 (MQ=255)
                                                                                       cTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACcaac  <  2:583783/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGGTCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAAC  >  NC_000913/3790519‑3790698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGGTCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAATT  >  NC_000913/3790517‑3790702
                                                                                            |                                                                                             
CAGCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGAT                                                                                              <  SRR4302547.5154632/94‑1 (MQ=60)
CAGCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGAT                                                                                              >  SRR4302547.5508966/1‑94 (MQ=60)
 AGCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATC                                                                                             >  SRR4302547.1622083/1‑94 (MQ=60)
   CGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCAT                                                                                           <  SRR4302547.5102895/94‑1 (MQ=60)
   CGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCAT                                                                                           >  SRR4302547.2280268/1‑94 (MQ=60)
     AAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCG                                                                                         <  SRR4302547.5588243/94‑1 (MQ=60)
      AACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGT                                                                                        <  SRR4302547.5659673/94‑1 (MQ=60)
      AACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGT                                                                                        <  SRR4302547.4103810/94‑1 (MQ=60)
          AATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCAC                                                                                    <  SRR4302547.1470217/94‑1 (MQ=60)
          AATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCAC                                                                                    >  SRR4302547.73631/1‑94 (MQ=60)
          AATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCAC                                                                                    >  SRR4302547.116139/1‑94 (MQ=60)
             CGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAAT                                                                                 >  SRR4302547.5543915/1‑94 (MQ=60)
              GAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATG                                                                                <  SRR4302547.4380405/94‑1 (MQ=60)
              GAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCATGATCATCGTCCACAATG                                                                                >  SRR4302547.2255535/1‑94 (MQ=60)
               AACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGT                                                                               >  SRR4302547.2277404/1‑94 (MQ=60)
                 CCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTA                                                                             >  SRR4302547.3105647/1‑94 (MQ=60)
                    TTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTA                                                                          >  SRR4302547.4188410/1‑94 (MQ=60)
                    TTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTA                                                                          <  SRR4302547.6440439/94‑1 (MQ=60)
                     TTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTAT                                                                         <  SRR4302547.2572107/94‑1 (MQ=60)
                        CCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTA                                                                      >  SRR4302547.6195812/1‑94 (MQ=60)
                        CCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTA                                                                      >  SRR4302547.6215862/1‑94 (MQ=60)
                         CTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCCCAATGTTATTATTTAG                                                                     <  SRR4302547.1166986/94‑1 (MQ=60)
                         CTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAG                                                                     <  SRR4302547.2735286/94‑1 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGATATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   <  SRR4302547.5773910/94‑1 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   >  SRR4302547.360377/1‑94 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   >  SRR4302547.3102051/1‑94 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   >  SRR4302547.1431276/1‑94 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   <  SRR4302547.138845/94‑1 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   <  SRR4302547.3313309/94‑1 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   >  SRR4302547.2067512/1‑94 (MQ=60)
                           CTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTG                                                                   <  SRR4302547.1218218/94‑1 (MQ=60)
                            TCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGT                                                                  >  SRR4302547.647009/1‑94 (MQ=60)
                             CCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTT                                                                 <  SRR4302547.528721/94‑1 (MQ=60)
                             CCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTT                                                                 <  SRR4302547.3208899/94‑1 (MQ=60)
                              CCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTA                                                                <  SRR4302547.3186217/94‑1 (MQ=60)
                              CCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTA                                                                >  SRR4302547.3870022/1‑94 (MQ=60)
                              CCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTA                                                                <  SRR4302547.602177/94‑1 (MQ=60)
                                  GATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTT                                                            >  SRR4302547.4975705/1‑94 (MQ=60)
                                  AATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTT                                                            <  SRR4302547.1706336/94‑1 (MQ=60)
                                   ATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTT                                                           >  SRR4302547.2970887/1‑94 (MQ=60)
                                   ATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTT                                                           >  SRR4302547.276183/1‑94 (MQ=60)
                                   ATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTT                                                           <  SRR4302547.2704424/94‑1 (MQ=60)
                                    TAGTTTAGGTTGAAGAGATCGGGGCGTTTGTACTAGCACATGACAAACATGCCCTGATCCTCGTCCACAATGTTATTATTTAGTGTTATTTTTT                                                          >  SRR4302547.1168835/1‑94 (MQ=60)
                                    TAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTT                                                          <  SRR4302547.3841751/94‑1 (MQ=60)
                                    TAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTT                                                          <  SRR4302547.3649248/94‑1 (MQ=60)
                                     AGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTG                                                         <  SRR4302547.1632565/94‑1 (MQ=60)
                                      GTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGA                                                        <  SRR4302547.5053375/94‑1 (MQ=60)
                                       TTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGAC                                                       <  SRR4302547.4865311/94‑1 (MQ=60)
                                         TAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTT                                                     <  SRR4302547.6257297/94‑1 (MQ=60)
                                          AGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTT                                                    <  SRR4302547.2021843/94‑1 (MQ=60)
                                           GGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTC                                                   >  SRR4302547.3001521/1‑94 (MQ=60)
                                             TTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCA                                                 >  SRR4302547.1281982/1‑94 (MQ=60)
                                              TGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAG                                                <  SRR4302547.5999713/94‑1 (MQ=60)
                                              TGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAG                                                >  SRR4302547.6608043/1‑94 (MQ=60)
                                                AAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAA                                              >  SRR4302547.1551943/1‑94 (MQ=60)
                                                   AGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTA                                           <  SRR4302547.2992586/94‑1 (MQ=60)
                                                     ATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAAT                                         >  SRR4302547.1211180/1‑94 (MQ=60)
                                                       CGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTT                                       <  SRR4302547.862484/94‑1 (MQ=60)
                                                       CGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTT                                       <  SRR4302547.4389235/94‑1 (MQ=60)
                                                       CGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTT                                       >  SRR4302547.651710/1‑94 (MQ=60)
                                                         GGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTAT                                     <  SRR4302547.1657528/94‑1 (MQ=60)
                                                         GGGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTAT                                     >  SRR4302547.3168621/1‑94 (MQ=60)
                                                          GGCGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATA                                    >  SRR4302547.3640505/1‑94 (MQ=60)
                                                          GGCGTTTCTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATA                                    <  SRR4302547.1410201/94‑1 (MQ=60)
                                                            CGTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGA                                  >  SRR4302547.6345816/1‑94 (MQ=60)
                                                             GTTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAA                                 >  SRR4302547.2440433/1‑94 (MQ=60)
                                                              TTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAT                                <  SRR4302547.911389/94‑1 (MQ=60)
                                                              TTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAT                                >  SRR4302547.3206440/1‑94 (MQ=60)
                                                              TTTGTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAAT                                >  SRR4302547.4768237/1‑94 (MQ=60)
                                                                 GTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCT                             <  SRR4302547.2087772/94‑1 (MQ=60)
                                                                 GTAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCT                             <  SRR4302547.6451373/94‑1 (MQ=60)
                                                                  TAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTT                            >  SRR4302547.6775272/1‑94 (MQ=60)
                                                                  TAATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTT                            <  SRR4302547.3828266/94‑1 (MQ=60)
                                                                   AATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTT                           <  SRR4302547.5974967/94‑1 (MQ=60)
                                                                    ATAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTC                          >  SRR4302547.3895948/1‑94 (MQ=60)
                                                                     TAGCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCC                         >  SRR4302547.2113357/1‑94 (MQ=60)
                                                                       GCACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCAT                       <  SRR4302547.5143039/94‑1 (MQ=60)
                                                                        CACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATT                      >  SRR4302547.6327274/1‑94 (MQ=60)
                                                                        CACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATT                      >  SRR4302547.4694035/1‑94 (MQ=60)
                                                                         ACATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTT                     >  SRR4302547.2928000/1‑94 (MQ=60)
                                                                           ATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTAT                   <  SRR4302547.6388215/94‑1 (MQ=60)
                                                                           ATGACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTAT                   <  SRR4302547.5770190/94‑1 (MQ=60)
                                                                             GACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGC                 >  SRR4302547.3007601/1‑94 (MQ=60)
                                                                             GACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGC                 <  SRR4302547.4901558/94‑1 (MQ=60)
                                                                              ACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCT                >  SRR4302547.3374831/1‑94 (MQ=60)
                                                                              ACAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCT                <  SRR4302547.4937351/94‑1 (MQ=60)
                                                                               CAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTG               <  SRR4302547.5062503/94‑1 (MQ=60)
                                                                               CAAAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTG               <  SRR4302547.1739783/94‑1 (MQ=60)
                                                                                 AAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTG             >  SRR4302547.1475671/1‑94 (MQ=60)
                                                                                 AAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTG             >  SRR4302547.6332843/1‑94 (MQ=60)
                                                                                 AAAATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTG             <  SRR4302547.769664/94‑1 (MQ=60)
                                                                                  AAATGCCCTGATCATCGTCCACAATGTTATTATTTAGGGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTTCATTTATGCTGTGA            >  SRR4302547.3082223/1‑94 (MQ=60)
                                                                                   AATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAA           >  SRR4302547.2775712/1‑94 (MQ=60)
                                                                                   AATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAA           >  SRR4302547.1504340/1‑94 (MQ=60)
                                                                                    ATGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAAC          <  SRR4302547.3480857/94‑1 (MQ=60)
                                                                                     TGCCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACC         <  SRR4302547.4210452/94‑1 (MQ=60)
                                                                                       CCCTGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAA       <  SRR4302547.2483222/94‑1 (MQ=60)
                                                                                          TGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAA    <  SRR4302547.5735513/94‑1 (MQ=60)
                                                                                          TGATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAA    >  SRR4302547.4799113/1‑94 (MQ=60)
                                                                                           GATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAAT   <  SRR4302547.2166293/94‑1 (MQ=60)
                                                                                           GATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAAT   >  SRR4302547.4785612/1‑94 (MQ=60)
                                                                                            ATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAATT  <  SRR4302547.5047205/94‑1 (MQ=60)
                                                                                            ATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAATT  <  SRR4302547.5114806/94‑1 (MQ=60)
                                                                                            ATCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAATT  <  SRR4302547.1113926/94‑1 (MQ=60)
                                                                                            |                                                                                             
CAGCGAAACAAATCGAACCATTTTCCTCTCCCCAGATAGTTTAGGTTGAAGAGATCGGGGCGTTTGTAATAGCACATGACAAAAATGCCCTGGTCATCGTCCACAATGTTATTATTTAGTGTTATTTTTTGACTTTCCAGAACTAATTTATAGAATTCTTTCCATTTATGCTGTGAACCAACAATT  >  NC_000913/3790517‑3790702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑