Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,085,675 |
Δ1 bp |
intergenic (+38/+13) |
yiiG → / ← frvR |
hypothetical protein/putative frv operon regulatory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,085,675 | 0 | G | . | 99.6%
| 1081.4
/ ‑3.5
| 231 | intergenic (+38/+13) | yiiG/frvR | hypothetical protein/putative frv operon regulatory protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (129/101); minor base C (0/1); total (129/102) |
| Fisher's exact test for biased strand distribution p-value = 4.42e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 |
Only 100 of 248 total aligned reads displayed.
GCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA > NC_000913/4085587‑4085762
|
gCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCg < 1:6307771/93‑1 (MQ=255)
gCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCg > 1:6537572/1‑93 (MQ=255)
aTTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGa‑c > 2:1829550/1‑93 (MQ=255)
aTTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGa‑c > 2:4040739/1‑93 (MQ=255)
ttACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGa‑ca > 2:5953316/1‑93 (MQ=255)
ttACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGa‑ca < 2:5841884/93‑1 (MQ=255)
tACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGa‑cac > 1:4518558/1‑93 (MQ=255)
tACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTGGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGa‑cac < 1:518655/93‑1 (MQ=255)
gcgAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGt < 1:5083876/93‑1 (MQ=255)
gcgAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGt < 2:4724976/93‑1 (MQ=255)
gAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTc < 2:3185798/93‑1 (MQ=255)
gAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTc < 1:1881154/93‑1 (MQ=255)
aGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCa < 2:4338445/93‑1 (MQ=255)
aGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCa > 1:4361659/1‑93 (MQ=255)
gTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCAc < 1:2208262/93‑1 (MQ=255)
aCAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCAccc > 1:2033767/1‑93 (MQ=255)
cAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCAcccc > 1:5897289/1‑93 (MQ=255)
aaaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCAcccc < 2:4506619/92‑1 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCt < 1:3130107/93‑1 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCt > 1:981431/1‑93 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCt < 1:3842744/93‑1 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCt > 1:1043944/1‑93 (MQ=255)
aCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCtt > 2:5202054/1‑93 (MQ=255)
aCGAAATGGTTGATAACTATATTGGGCTGCGTTAAGCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCtt < 2:2693436/93‑1 (MQ=255)
cGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTtg > 2:4419419/1‑93 (MQ=255)
aaTGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGa > 1:4760881/1‑93 (MQ=255)
aaTGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGa > 2:3966546/1‑93 (MQ=255)
aTGGTTGATAACTATAATAGCCTGCGTTAAACT‑TTTTTGATGAAAAATGCAGTGTCGGATGCGGTGC‑ATCCGA‑CACAGTTCACCCCTTGTGaa < 2:2628137/93‑1 (MQ=255)
tGGTTGATGACTATCATAGCCTGCGTTAAACG‑TTTATGATGATAAATGCAGTGTCGGATCTGGCGC‑ATCCGA‑CACAGTTTACCCCTTGTGAAg > 1:2688717/1‑93 (MQ=255)
tGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAg > 1:2091958/1‑93 (MQ=255)
ggTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGt > 2:6233531/1‑93 (MQ=255)
gTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTa > 2:145259/1‑93 (MQ=255)
atgaCTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTc > 2:3163792/1‑93 (MQ=255)
atgaCTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTc < 1:4179310/93‑1 (MQ=255)
atgaCTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTc < 2:946175/93‑1 (MQ=255)
ttattataATAGCCTGC‑TTAAACGTTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ACCCGA‑CACAGTTCACCCCTTGTGAAGTAACTcc < 2:120258/89‑1 (MQ=255)
tgaCTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTcc > 2:1306738/1‑93 (MQ=255)
tgaCTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTcc > 2:414996/1‑93 (MQ=255)
tataATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATaa > 1:4249676/1‑93 (MQ=255)
ataataGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATaaa > 2:5872774/1‑93 (MQ=255)
ataataGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATaaa > 2:3695325/1‑93 (MQ=255)
taataGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAAt > 2:6006148/1‑93 (MQ=255)
taGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGcc > 1:6421044/1‑93 (MQ=255)
taGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGcc < 2:2645781/93‑1 (MQ=255)
taGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGcc < 2:4683219/93‑1 (MQ=255)
gCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTc < 2:5130522/93‑1 (MQ=255)
ccTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCa < 2:5015269/93‑1 (MQ=255)
cTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCat < 2:1839133/93‑1 (MQ=255)
tGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATGCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCata > 2:3477526/1‑93 (MQ=255)
gCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTACATAAATGCCTCatac > 2:3604957/1‑92 (MQ=255)
ttaaaaCT‑TTTTTAAGAAAAAATGCAGTGCCGGATGCGGC‑CCATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATcc < 1:249681/90‑1 (MQ=255)
gTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATcc > 2:4235776/1‑93 (MQ=255)
gTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGC‑CCATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATcc < 1:4379054/93‑1 (MQ=255)
ttAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCCCCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCt < 1:941687/93‑1 (MQ=255)
ttAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCt > 1:1442221/1‑93 (MQ=255)
ttAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCt > 1:1121190/1‑93 (MQ=255)
aaaCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGt < 1:553025/93‑1 (MQ=255)
aaCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGtt > 2:2284644/1‑93 (MQ=255)
aaCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGtt > 2:4645942/1‑93 (MQ=255)
aaCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGtt < 2:1708727/93‑1 (MQ=255)
aaCG‑TTTGTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGtt < 2:1720037/93‑1 (MQ=255)
aCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTa > 2:843825/1‑93 (MQ=255)
aCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTa > 1:4725258/1‑93 (MQ=255)
aCG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTa < 2:3300021/93‑1 (MQ=255)
cG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTaa > 1:4948251/1‑93 (MQ=255)
g‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAc > 1:617004/1‑93 (MQ=255)
g‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAc > 1:158005/1‑93 (MQ=255)
ttGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCgg < 1:3669949/93‑1 (MQ=255)
tgatgaTAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGc < 1:702539/93‑1 (MQ=255)
tgatgaTAAATGCAGTGTCGGAGGCGGCGC‑ACCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGc < 1:1252678/93‑1 (MQ=255)
gatgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa > 1:816611/1‑93 (MQ=255)
atgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaa > 2:1745408/1‑93 (MQ=255)
tgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaat > 2:5992870/1‑93 (MQ=255)
tgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaat > 2:5554050/1‑93 (MQ=255)
tgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaat > 1:234149/1‑93 (MQ=255)
atAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataa > 1:4486769/1‑93 (MQ=255)
atAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataa < 2:2894855/93‑1 (MQ=255)
tAAATGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataat > 1:3444184/1‑93 (MQ=255)
aaaTGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtc > 1:1939785/1‑93 (MQ=255)
aaaTGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtc < 2:6147906/93‑1 (MQ=255)
aaaTGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtc > 1:5205520/1‑93 (MQ=255)
aaaTGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtc > 2:4203277/1‑93 (MQ=255)
aTGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtctc > 1:5670990/1‑93 (MQ=255)
aTGCAGGGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtctc < 1:1794202/93‑1 (MQ=255)
tGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc < 1:4427291/93‑1 (MQ=255)
tGCAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc < 2:6511373/93‑1 (MQ=255)
gaaGTGTCGTATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg < 1:3527708/91‑1 (MQ=255)
cAGTGTCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAACCGGCAATAATCTccgc > 2:1338201/1‑93 (MQ=255)
tgtCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCgg < 2:2167549/93‑1 (MQ=255)
gtCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGa < 2:5395671/93‑1 (MQ=255)
tCGGGTGCGGCGC‑ATCCGACCACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGa < 2:1591103/93‑1 (MQ=255)
tCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAt > 1:2410279/1‑93 (MQ=255)
tCGGATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAt > 1:869216/1‑93 (MQ=255)
gATGCGGCGC‑ATCCGA‑CACAGTTTACCCCTTGTGCAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGcg > 2:4835437/1‑92 (MQ=255)
gATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt < 1:671244/93‑1 (MQ=255)
gATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt > 1:6002656/1‑93 (MQ=255)
gATGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt > 2:3399459/1‑93 (MQ=255)
aTGCGGCGC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTg < 1:317919/93‑1 (MQ=255)
gcggcgC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac < 2:1087221/93‑1 (MQ=255)
cggcgC‑ATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGaca < 2:3647043/93‑1 (MQ=255)
|
GCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACG‑TTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGA‑CACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA > NC_000913/4085587‑4085762
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > NC_000913/4085585‑4085768
|
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCC < SRR4302547.4319397/94‑1 (MQ=60)
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCC < SRR4302547.5510202/94‑1 (MQ=60)
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCC < SRR4302547.5918315/94‑1 (MQ=60)
AGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCG > SRR4302547.4151622/1‑94 (MQ=60)
AGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCG > SRR4302547.6673617/1‑94 (MQ=60)
AGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCAGCGC‑ATCCG > SRR4302547.348045/1‑94 (MQ=60)
GCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA > SRR4302547.1374738/1‑94 (MQ=60)
GCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGA < SRR4302547.6438914/94‑1 (MQ=60)
ATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACA < SRR4302547.677892/94‑1 (MQ=60)
TTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACAC > SRR4302547.4611903/1‑94 (MQ=60)
TTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACAC < SRR4302547.5260491/94‑1 (MQ=60)
TTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACAC > SRR4302547.6524721/1‑94 (MQ=60)
TACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTGGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACA < SRR4302547.528058/94‑1 (MQ=60)
ACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAG < SRR4302547.4413376/94‑1 (MQ=60)
GCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTT > SRR4302547.4920440/1‑94 (MQ=60)
GCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTT < SRR4302547.5188752/94‑1 (MQ=60)
GCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTT < SRR4302547.680510/94‑1 (MQ=60)
CGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTC > SRR4302547.829213/1‑94 (MQ=60)
GAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCA < SRR4302547.1918322/94‑1 (MQ=60)
GAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCA > SRR4302547.4451239/1‑94 (MQ=60)
ataaaacaaaagGGTTGATGACTATAATAGCCTGCGTTAAACTTTTTTGATAAAAAAGGAAGTGTCGGAGGCGGCGC‑ACCCGACACAGTTCACC < SRR4302547.3531027/82‑1 (MQ=38)
GTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACC < SRR4302547.5946062/94‑1 (MQ=60)
GTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACC < SRR4302547.2252654/94‑1 (MQ=60)
GTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACC > SRR4302547.2410394/1‑94 (MQ=60)
TACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCC > SRR4302547.2074286/1‑94 (MQ=60)
ACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCC > SRR4302547.6019409/1‑94 (MQ=60)
CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCT > SRR4302547.1064552/1‑94 (MQ=60)
CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCT < SRR4302547.317783/94‑1 (MQ=60)
CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCT > SRR4302547.1000527/1‑94 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCGGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTT < SRR4302547.3886981/94‑1 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTT < SRR4302547.921415/94‑1 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTT < SRR4302547.3921001/94‑1 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTT < SRR4302547.3192226/94‑1 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTT < SRR4302547.3698556/94‑1 (MQ=60)
ACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTG < SRR4302547.2198008/94‑1 (MQ=60)
ACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAAGGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTG < SRR4302547.444289/94‑1 (MQ=60)
GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCCCCCCTTGTG < SRR4302547.6639660/94‑1 (MQ=60)
GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTG > SRR4302547.4843696/1‑94 (MQ=60)
GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTG > SRR4302547.4802290/1‑94 (MQ=60)
GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTG > SRR4302547.4600689/1‑94 (MQ=60)
GAAAAGGTTGATGCTTATAATAGCCTGCTTTAAACGTTTTTGATAATAAATGCAGTGTCAGACGCGGCGC‑ATCCGACACAGTTCACCCCTTGTG < SRR4302547.3984396/94‑1 (MQ=59)
AAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGA > SRR4302547.4859520/1‑94 (MQ=60)
AATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAA > SRR4302547.1919152/1‑94 (MQ=60)
ATGGTTGATGACTATCATAGCCTGCGTTAAACGTTTATGATGATAAATGCAGTGTCGGATCTGGCGC‑ATCCGACACAGTTTACCCCTTGTGAAG > SRR4302547.2742689/1‑94 (MQ=60)
ATGGTTGATGACTATAATAGCCTGCTTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAG < SRR4302547.490098/94‑1 (MQ=60)
ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAG > SRR4302547.2117992/1‑94 (MQ=60)
ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAG > SRR4302547.5870083/1‑94 (MQ=60)
ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAG > SRR4302547.6113697/1‑94 (MQ=60)
ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAG > SRR4302547.2133651/1‑94 (MQ=60)
GGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATGCGACACAGTTCACCCCTTGTGAAGTA > SRR4302547.3588723/1‑94 (MQ=60)
GTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAA > SRR4302547.3194077/1‑94 (MQ=60)
TGATGACTATAATAGCCTGCGTTAACCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACT < SRR4302547.2605120/94‑1 (MQ=60)
TGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACT < SRR4302547.6194992/94‑1 (MQ=60)
ATGACTATAATAGCCTGCTTTAACCTTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCC < SRR4302547.2504859/94‑1 (MQ=60)
ATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTTACCCCCTGTGAAGTAACTAC > SRR4302547.8145/1‑94 (MQ=60)
ATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCC < SRR4302547.4264469/94‑1 (MQ=60)
ACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATA < SRR4302547.4471585/94‑1 (MQ=60)
CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAA > SRR4302547.4336619/1‑94 (MQ=60)
TATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAA > SRR4302547.1495941/1‑94 (MQ=60)
aaaaaagcctggttaaacggtttttgagaATAAATGCAGTGTCGGATGCGGCGC‑CCCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAAT < SRR4302547.3579866/65‑1 (MQ=60)
ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCC > SRR4302547.6554900/1‑94 (MQ=60)
TAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCT > SRR4302547.5294150/1‑94 (MQ=60)
TAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCT < SRR4302547.993129/94‑1 (MQ=60)
TAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCT < SRR4302547.3290681/94‑1 (MQ=60)
TGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATAT < SRR4302547.1851653/94‑1 (MQ=60)
GCTTTAAGCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATC < SRR4302547.1178693/94‑1 (MQ=60)
CGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCC < SRR4302547.701920/94‑1 (MQ=60)
ttaaaacttttttaagaaaAAATGCAGTGCCGGATGCGGC‑CCATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCT < SRR4302547.254354/75‑1 (MQ=60)
GTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCT > SRR4302547.1143799/1‑94 (MQ=60)
GTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCT > SRR4302547.1471058/1‑94 (MQ=60)
GTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGC‑CCATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCT < SRR4302547.4469072/94‑1 (MQ=60)
TTAAATGTTTTTGATGAAAAATGCAGTGCCGAATGCGGCGC‑ATCCCACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTG < SRR4302547.194863/94‑1 (MQ=60)
TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCCCCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTG < SRR4302547.959937/94‑1 (MQ=60)
TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTG < SRR4302547.5422716/94‑1 (MQ=60)
TAAACTTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGT < SRR4302547.208894/94‑1 (MQ=60)
TAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGaatgtcaagatcg < SRR4302547.4400178/94‑14 (MQ=60)
AAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTT < SRR4302547.4511151/94‑1 (MQ=60)
AAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTT > SRR4302547.2477108/1‑94 (MQ=60)
AAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTT < SRR4302547.562988/94‑1 (MQ=60)
AACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTA > SRR4302547.4823155/1‑94 (MQ=60)
ACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAA > SRR4302547.5050720/1‑94 (MQ=60)
CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC > SRR4302547.160901/1‑94 (MQ=60)
CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC > SRR4302547.628428/1‑94 (MQ=60)
GTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACC > SRR4302547.1424886/1‑94 (MQ=60)
TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCC < SRR4302547.5113102/94‑1 (MQ=60)
TTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGC < SRR4302547.3744794/94‑1 (MQ=60)
TGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA < SRR4302547.715523/94‑1 (MQ=60)
TGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA > SRR4302547.6401806/1‑94 (MQ=60)
TGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA > SRR4302547.832116/1‑94 (MQ=60)
TGATGATAAATGCAGTGTCGGAGGCGGCGC‑ACCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA < SRR4302547.1277950/94‑1 (MQ=60)
ATGATAGATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT > SRR4302547.4414067/1‑94 (MQ=60)
ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT > SRR4302547.238547/1‑94 (MQ=60)
ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT < SRR4302547.4564595/94‑1 (MQ=60)
GATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAA < SRR4302547.4155484/94‑1 (MQ=60)
GATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAA > SRR4302547.4579449/1‑94 (MQ=60)
ATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAT < SRR4302547.230614/94‑1 (MQ=60)
ATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAT > SRR4302547.3514399/1‑94 (MQ=60)
TAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC > SRR4302547.5312636/1‑94 (MQ=60)
TAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC < SRR4302547.5217570/94‑1 (MQ=60)
TAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC > SRR4302547.1978255/1‑94 (MQ=60)
AATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAGCCCGGCAATAATCTC < SRR4302547.1124424/94‑1 (MQ=60)
AATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTC > SRR4302547.5788085/1‑94 (MQ=60)
ATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC < SRR4302547.3675416/94‑1 (MQ=60)
ATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC < SRR4302547.2049031/94‑1 (MQ=60)
ATGCAGGGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC < SRR4302547.1829710/94‑1 (MQ=60)
TGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCG < SRR4302547.4518776/94‑1 (MQ=60)
GAAGTGTCGTATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGC < SRR4302547.3599739/94‑1 (MQ=60)
AGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCG > SRR4302547.563324/1‑94 (MQ=60)
AGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCG > SRR4302547.839384/1‑94 (MQ=60)
GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT > SRR4302547.2459077/1‑94 (MQ=60)
GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT < SRR4302547.888162/94‑1 (MQ=60)
GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT > SRR4302547.2749019/1‑94 (MQ=60)
GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT > SRR4302547.885861/1‑94 (MQ=60)
TCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATG < SRR4302547.1644781/94‑1 (MQ=60)
GGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT > SRR4302547.1645166/1‑94 (MQ=60)
GGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT > SRR4302547.4811349/1‑94 (MQ=60)
GGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT > SRR4302547.6127218/1‑94 (MQ=60)
GATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTG < SRR4302547.683598/94‑1 (MQ=60)
ATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGA < SRR4302547.323837/94‑1 (MQ=60)
TGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGAC < SRR4302547.5493274/94‑1 (MQ=60)
TGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGAC < SRR4302547.4301222/94‑1 (MQ=60)
TGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGAC > SRR4302547.6136312/1‑94 (MQ=60)
GCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA < SRR4302547.6486128/94‑1 (MQ=60)
GCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAA < SRR4302547.1837294/94‑1 (MQ=60)
CGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAAT > SRR4302547.447334/1‑94 (MQ=60)
CGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAAT < SRR4302547.1795904/94‑1 (MQ=60)
CATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > SRR4302547.2609773/1‑94 (MQ=60)
CATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > SRR4302547.5087083/1‑94 (MQ=60)
|
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > NC_000913/4085585‑4085768
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
