Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I0 R1
|
150 |
9496.0 |
7621532 |
98.4% |
7499587 |
136.2 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTCAATTC > NZ_CP022686/1819798‑1820094
|
AGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGTATTTCATTTA‑TTTTTTTTTAA > NB501016:372:H5LTGBGXK:1:13302:21649:18586/1‑151 (MQ=60)
GTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGCAATAGTTTTAAAAACTGTTCTTTTTATGATATTGACTGAGTGAGTTTTGATTCTTTTTCGCTTATCACTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTAAATATA > NB501016:372:H5LTGBGXK:3:13404:10021:5020/1‑151 (MQ=60)
GTTTTGATTCTTTTTCGCTTATCTCTTCATCATAATTATGCAATTGTTTTAAAATCTGTTCTATTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCTATTATCTCATCTTGATATTTATGTATGTAATTTA‑TTTTTTTTTAAATATA > NB501016:372:H5LTGBGXK:1:21210:19939:17566/1‑151 (MQ=60)
ATTCTTTTTCGCTTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTAATATTTCTGTATGTCATTTA‑TTTTTTTTTAAATATAATCTGG > NB501016:372:H5LTGBGXK:4:23403:10317:3825/1‑151 (MQ=60)
TTTCGCTTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTT < NB501016:372:H5LTGBGXK:2:21108:11096:10616/151‑1 (MQ=60)
CGCTTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCT > NB501016:372:H5LTGBGXK:2:11311:6795:3824/1‑151 (MQ=60)
TTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTG < NB501016:372:H5LTGBGXK:1:22111:22594:6160/151‑1 (MQ=60)
TCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGTATGTCATTTA‑TTTTTTTTTAAATATCATCTGGATATTTTTATTTTCTCACAA > NB501016:372:H5LTGBGXK:1:23202:20392:3725/1‑151 (MQ=60)
CTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTATTGTCTCACAAC > NB501016:372:H5LTGBGXK:3:11508:15300:14261/1‑151 (MQ=60)
ATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCTATATCATCTGGATATTTTTCTTGTCTCACAACATCGT > NB501016:372:H5LTGBGXK:2:23202:22176:7899/1‑151 (MQ=60)
ATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGT < NB501016:372:H5LTGBGXK:3:11605:16503:16816/151‑1 (MQ=60)
TATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGT > NB501016:372:H5LTGBGXK:3:13604:7993:15118/1‑151 (MQ=60)
ATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGA < NB501016:372:H5LTGBGXK:2:23308:15474:20280/151‑1 (MQ=60)
TGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATT < NB501016:372:H5LTGBGXK:3:12607:19835:20268/151‑1 (MQ=60)
ATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGTATGACATTTA‑‑TTTTTTTTCAATATCATCTGTATATTTTTCTTTTCTCACAACATCGATGTGATTTATT > NB501016:372:H5LTGBGXK:1:23108:14025:17672/1‑151 (MQ=60)
TTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTT < NB501016:372:H5LTGBGXK:4:21602:10072:10605/151‑1 (MQ=60)
TAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAA < NB501016:372:H5LTGBGXK:3:22602:14029:5159/151‑1 (MQ=60)
TTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTA < NB501016:372:H5LTGBGXK:1:12211:23182:7563/151‑1 (MQ=60)
TTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATGCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTATCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATT < NB501016:372:H5LTGBGXK:4:12602:14685:5828/151‑1 (MQ=60)
tgtataagagacagGCCTGAGTGAGTTTTGATGCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACC < NB501016:372:H5LTGBGXK:2:12205:2839:2103/137‑1 (MQ=60)
TTCTGATATTGCCTGAGTGAGTTTTGATTCATTTTCGCTTATCTCATCTTAATATTTATGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTAACAACATAGATGTGATTTATTATTGAAAGTTTAATTACATCT > NB501016:372:H5LTGBGXK:4:22411:11430:16030/1‑151 (MQ=60)
aataaTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAAAATCGTTGTGATTTATTTTTGAAAGTTTAATTACATCTTACTT > NB501016:372:H5LTGBGXK:1:21305:13485:17555/6‑151 (MQ=60)
GATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCT > NB501016:372:H5LTGBGXK:4:22601:11948:4097/1‑151 (MQ=60)
GATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACATATTCCT > NB501016:372:H5LTGBGXK:1:12101:5086:6851/1‑151 (MQ=60)
GATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTT > NB501016:372:H5LTGBGXK:1:21305:13499:17550/1‑151 (MQ=60)
GATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTT > NB501016:372:H5LTGBGXK:2:11308:10432:16861/1‑151 (MQ=60)
GATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACATATTCCTT > NB501016:372:H5LTGBGXK:1:21305:13496:17540/1‑151 (MQ=60)
ATTGCCTGAGTGAGTTTTGAATCTATTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTC < NB501016:372:H5LTGBGXK:1:23210:16911:15116/151‑1 (MQ=60)
GCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTT > NB501016:372:H5LTGBGXK:2:21301:5921:7238/1‑151 (MQ=60)
TGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTT < NB501016:372:H5LTGBGXK:3:23612:18562:3763/151‑1 (MQ=60)
TGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGC < NB501016:372:H5LTGBGXK:2:21302:19827:9778/151‑1 (MQ=60)
GTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACATCTTCCTTTTCTTTTTTTAGATCA > NB501016:372:H5LTGBGXK:1:11105:9669:19762/1‑151 (MQ=60)
acagCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGTATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAA < NB501016:372:H5LTGBGXK:4:21411:26771:7494/147‑1 (MQ=60)
acagCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAA < NB501016:372:H5LTGBGXK:4:21412:1084:7498/147‑1 (MQ=60)
ATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATA > NB501016:372:H5LTGBGXK:1:11107:5031:10601/1‑151 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:2:12109:21822:10883/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:4:13405:25214:12354/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:1:21102:9191:11707/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:3:13509:12750:9163/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:1:22202:23742:9379/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:2:11205:7307:5601/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:2:12308:7445:1924/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTAAGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATC < NB501016:372:H5LTGBGXK:4:21608:12554:5179/151‑1 (MQ=60)
TTCTTTTTCGCTTATCTCATCATCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:3:22507:3214:18607/151‑1 (MQ=60)
TCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:2:11209:20298:20078/151‑1 (MQ=60)
TCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:1:23307:10371:11697/151‑1 (MQ=60)
TCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:1:13309:5182:15557/151‑1 (MQ=60)
TCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:3:13604:9800:16376/151‑1 (MQ=60)
TCTTTTTCGCTTATCTCTTCATCATATTTCTGTATGTCATTTA‑TTTCTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:1:12111:13109:1918/151‑1 (MQ=60)
TCTTTTTCGCTTATCTCATCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:2:21104:13272:9367/151‑1 (MQ=60)
gtgtataagagacagCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTG < NB501016:372:H5LTGBGXK:4:23509:22644:8508/136‑1 (MQ=60)
CTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTATTTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCC < NB501016:372:H5LTGBGXK:1:21104:3629:2906/151‑1 (MQ=60)
TTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTC < NB501016:372:H5LTGBGXK:2:11310:6276:3304/151‑1 (MQ=60)
GCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGATCATTAATacggttacat > NB501016:372:H5LTGBGXK:4:12510:18221:4054/1‑141 (MQ=60)
GCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATA > NB501016:372:H5LTGBGXK:1:22102:25109:13350/1‑151 (MQ=60)
CTTCTCTCTTCTTCCTATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGGTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAA < NB501016:372:H5LTGBGXK:4:13506:6553:3192/151‑1 (MQ=60)
TATCTCTTCTTCATATTTCTGTATGTCATTTATTTTTTTTTTCAATATCATCTGGATATTTTTCTTTTCTCAGAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAA < NB501016:372:H5LTGBGXK:2:12208:8694:19731/151‑1 (MQ=60)
TATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTGTAGTCTCACAACATCGTTGTGATTTATTTTTGATAGTTTAATTAACTCTTCCTTTTCTTTTTTAAGCTCATTAATCCTGTTCAATAATA > NB501016:372:H5LTGBGXK:2:12309:8873:6627/1‑151 (MQ=60)
TATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTTAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTATTCCTGTTCAATAATA > NB501016:372:H5LTGBGXK:3:12508:17600:5998/1‑151 (MQ=60)
TATCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGATCATTAATCATGTTCAATAATA > NB501016:372:H5LTGBGXK:3:21401:12747:2606/1‑151 (MQ=60)
TCTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAA > NB501016:372:H5LTGBGXK:2:21309:16917:19627/1‑151 (MQ=60)
CTCTTCTTCATATTTCTGTATGTCATTTA‑‑TTTATTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTAATAAATGCTGTTCAATAATAAAA > NB501016:372:H5LTGBGXK:3:22510:16218:12405/1‑151 (MQ=60)
CTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAA > NB501016:372:H5LTGBGXK:4:22502:15262:8252/1‑151 (MQ=60)
CTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATACTGTTCAATAATAAAAA > NB501016:372:H5LTGBGXK:4:11401:20182:2273/1‑151 (MQ=60)
CTTCTTCATATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCATTTTCTTTTTTTAGATCATTAATACTGTTCAATAATAAAAAT > NB501016:372:H5LTGBGXK:4:11508:4733:9764/1‑151 (MQ=60)
TTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAAT < NB501016:372:H5LTGBGXK:1:23206:10307:14039/151‑1 (MQ=60)
cagTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATT > NB501016:372:H5LTGBGXK:1:12310:8404:13313/4‑151 (MQ=60)
TCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTG > NB501016:372:H5LTGBGXK:1:21203:18896:11962/1‑151 (MQ=60)
ATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTT > NB501016:372:H5LTGBGXK:3:21601:24892:5233/1‑151 (MQ=60)
TATTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTT > NB501016:372:H5LTGBGXK:3:21607:11281:16921/1‑151 (MQ=60)
TTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTTTCTTTTCT > NB501016:372:H5LTGBGXK:1:21107:15165:15854/1‑151 (MQ=60)
TTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCT > NB501016:372:H5LTGBGXK:3:12405:18961:17191/1‑151 (MQ=60)
TTTCTGTATGTCATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACAACGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAAATGTCTTTTCT > NB501016:372:H5LTGBGXK:4:23602:26431:9621/1‑151 (MQ=60)
TGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCTTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATAT < NB501016:372:H5LTGBGXK:4:23502:2113:5256/151‑1 (MQ=60)
CATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGAT < NB501016:372:H5LTGBGXK:2:21108:7402:4983/151‑1 (MQ=60)
CATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGAT < NB501016:372:H5LTGBGXK:2:13110:12578:13430/151‑1 (MQ=60)
ATTTA‑‑TTTTTTTTCAATATCATCTTGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATT < NB501016:372:H5LTGBGXK:1:13207:22539:14720/151‑1 (MQ=60)
ATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATT < NB501016:372:H5LTGBGXK:2:21111:17538:8382/151‑1 (MQ=60)
ATTTA‑‑TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATT < NB501016:372:H5LTGBGXK:4:22402:8314:4434/151‑1 (MQ=60)
aatttaTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGAT < NB501016:372:H5LTGBGXK:1:12207:16786:15899/145‑1 (MQ=60)
TTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATCGTCTTTTCTTAAATATAGATT < NB501016:372:H5LTGBGXK:4:23608:14119:17084/151‑1 (MQ=60)
TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTC < NB501016:372:H5LTGBGXK:2:12308:1815:5995/151‑1 (MQ=60)
TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTC < NB501016:372:H5LTGBGXK:1:23201:16200:2241/151‑1 (MQ=60)
TTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCAATTCTTTTTTTAGCTCATTAATCCTGATCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTC < NB501016:372:H5LTGBGXK:1:22104:2574:1160/151‑1 (MQ=60)
TTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTCAATTC < NB501016:372:H5LTGBGXK:2:23106:1096:11529/151‑1 (MQ=60)
TTTCAATATCATCTGGATATATTTCTTGTCTCACAACATCGGTGTGATTTATTTTTGAAATTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAAACCTGATCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTCAATTC < NB501016:372:H5LTGBGXK:2:23107:26658:11525/151‑1 (MQ=60)
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AGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTATGCAATTGTTTTAAAATCTGTTCTTTTTCTGATATTGCCTGAGTGAGTTTTGATTCTTTTTCGCTTATCTCTTCTTCATATTTCTGTATGTCATTTA‑TTTTTTTTTCAATATCATCTGGATATTTTTCTTGTCTCACAACATCGTTGTGATTTATTTTTGAAAGTTTAATTACCTCTTCCTTTTCTTTTTTTAGCTCATTAATCCTGTTCAATAATAAAAATTGTCTTTTCTTAAATATAGATTTAGTCAATTC > NZ_CP022686/1819798‑1820094
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
