Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,461,221 |
T→G |
15.4% |
intergenic (‑30/+5) |
CIW80_RS17335 ← / ← CIW80_RS17340 |
tRNA‑Leu/tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,461,221 | 0 | T | G | 15.4%
| 146.2
/ 4.5
| 117 | intergenic (‑30/+5) | CIW80_RS17335/CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base T (30/60); new base G (15/3); total (48/69) |
| Fisher's exact test for biased strand distribution p-value = 1.27e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 118 total aligned reads displayed.
AGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGG‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGAC > NZ_CP022686/3461085‑3461358
|
ctaaaGTATGTAACTATAATTGGTGCGCGGGGGGCG‑ACTGGACCCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGt < 3:444157/138‑1 (MQ=18)
aGAAAGGAAGTAAATATAATTGGGGCGCGGGGGGGC‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCCCGt < 2:463441/140‑1 (MQ=21)
cacaGGACGTAAATAAAATTGGTGCGAGGGGGGGG‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCg < 7:703625/135‑1 (MQ=255)
caaaGCAAGTAAAGATAATTGGTGCGAGGGGGGGG‑ACTTGAACCCCCACGGCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGtt < 2:618272/139‑1 (MQ=255)
taataaaaGATATTTGGTGCTCGGGGGGTG‑AATTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 1:755596/135‑1 (MQ=18)
ccagaacaGAAAATGGGGGCGGGGGGGTGG‑ACGTGACCCCCCACGGACTTAAGAACACTC‑AAACCTGCAGCTAGCGCGTCTACAAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 4:680237/133‑1 (MQ=255)
cattaaaaGATAATGGGGGGGCGGGGGGGGCATTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGt < 5:109685/135‑1 (MQ=18)
attAAAGATAATTGGTGCGAGGGGGGGG‑AATTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCg < 2:851968/138‑1 (MQ=255)
aaacgATTATTGGTGCGCGGGGGGTG‑CCTGGCACCCCCACGTCCGTAACAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAg < 4:999878/136‑1 (MQ=21)
aaaataaaaTTGGTGCGAGGGGGGTG‑ACTTCAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAAATCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAg < 2:572036/133‑1 (MQ=21)
aaaataaaTGGGGGCGAGGGGGGGT‑CCTTCCCCCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgg < 3:237240/134‑1 (MQ=21)
caataTTGGGGCGAGGGGGGGG‑ACTCGACCCCCCACGGCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg < 5:445017/136‑1 (MQ=21)
ttGGTGCGAGGGGGGGG‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACGTT‑CGCAGAGTCATTATTCTTTTTTTGATATCGACGCGCTTGGGGCGAtgggtggtcc > 1:112223/1‑137 (MQ=14)
ttGGTGCGAGGGGGGGG‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATGGAAGCGGTGGGTGGGAgggggggg > 7:200924/1‑138 (MQ=17)
ggggcttgggggggg‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGGCTACCAATTCCGCCACCTT‑CCCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACtt < 2:1178750/133‑1 (MQ=255)
cGAGGGGGGGG‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGAAGCGGTTGGGGCGAGGGGTGGGCATTGAAc > 1:230752/1‑140 (MQ=18)
ggg‑ACTTGAACCCCCACGTCCGTAAGACCACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACACGCAGCTTACTTTTATAGATTTCGACGCACTGGGTGGGAGGCGGGGGCCTTGCACCCCCACgg > 3:519792/1‑139 (MQ=14)
gtccacccccaACGTCCGAAAGACCCCTC‑ACACCTCACGCTCGCGCGTCAACAAATTCCGCCACATT‑CTCACAGGCATATTACTTTTTTTTATATCCCCTGTTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTcc < 8:215032/132‑1 (MQ=16)
ccagcgccGAAATAAAACTA‑ACACATGACTCAAGAGCTTATACCAATTCCGCCACCTT‑CGCAAAGTCATCTTACTTTTTTTGATTTAGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAaca < 8:815829/132‑1 (MQ=21)
ccACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAGCTTACTTTAAAAGATATCGACGCGCTTCGTGCGAGGCGTGGGGCTTGCACCCACTCGTCCTGAAGAacaca > 5:231453/1‑139 (MQ=17)
ccACGTCCGTAACAACAATA‑AAACCTCAAGCTAGCCAGTATACCAATTCCGCCACCTA‑CCCACAGTAATCTAACTTTTTTTTATATCCCCTCTTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 4:759123/140‑1 (MQ=21)
ccACGGCGGTATCAACACAA‑ACACCTTAAGCTACGGCGTCTACAAATTCCGCCACCTT‑CGCACAGTCATGTTATTTTTTTTGATATCGCCTCTTTTGGTGCGTGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACt < 3:910868/140‑1 (MQ=25)
ccACGGCCGTAACAACACTA‑CAACCTGAAGATATCTCGTATACCAATTCCGCCACCAT‑CCCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 4:514525/140‑1 (MQ=37)
aggTCCGTATTAACCCTA‑CCCCCTGACGCTAGCGCGTCTACCAATTCCGCCACTTT‑CCCAATGGCATCTTACTTTTTTTGATTTCGACTCTTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa < 2:220446/138‑1 (MQ=21)
acttCCGTAATAACACAA‑ACACCTGAAGCTACCGCGTCTACCAATTCCGCCACGTT‑CCCACAGTCATCTTCCTTTTTTTTATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa < 2:729018/137‑1 (MQ=37)
aCGGCCGTTAGATCCCTA‑CAACTTGACGCTACCTCGTATCCCAATTCCGCCACCTA‑CGCACAGGCATAATACTTTTTTTGATATCCCCTCCTTTGGCGCGAGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACt < 8:114065/138‑1 (MQ=16)
ctgTAATAACAATA‑ACACATGAAGATACCGCGTATACCAATACCGCCTCTTT‑CCAACAGTCAGCTTTCTTTTTTTGATATCTCCTTTTTTGGTGCGTGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAaca < 8:267972/136‑1 (MQ=16)
ccGTAAGACCACTATACA‑CTGAAGCTTCTTCTTCAACCTATTCCGCCACCTT‑CGCACAGTCATCTTAATTTTTTTGATTTCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAacacg < 2:681470/140‑2 (MQ=21)
ccGTAAGAACACTT‑AACCATGAAGATTTCTAGTATACAAAATCCGCCACTTA‑CGAACAGTCAACTTACTTTTTTTGATATCTCCTATTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACAcc < 4:831309/140‑1 (MQ=12)
cTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAACTTACTTTTATTGATATCGGAGCGGTTGGTGCGAGGGGTGGGACTTTCACCCCCACGTCCGTAAGAACACAACCCCATGACGCTAg > 7:209658/1‑138 (MQ=21)
tA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTATTTGATATCGCCTCGTGTGGTGCGAGGGGGGGGACTTGAACCACCACGTCCGTAAGAAAACATACGCCTGAAGCTAccgc > 1:558986/1‑140 (MQ=37)
tA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATATTACTTTAATTGATATCGAAGCGGTTGGTGCGAGTGGTGGGACTTGCACCCCCTCGTCATTATGAAAAATAACACCTTAAGCTAgcgc > 2:381970/1‑140 (MQ=21)
tA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCAAACTCAGCTTACTTTTTTTGATATCGGCGCGTTGGGTGGGAGGGGGGGGGCTTGCAGCCGCTCGTCAGTAATAACACAACCACATCAAGCTAgggc > 6:1083846/1‑140 (MQ=16)
acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAGCTTACTTTTTTAGATATCGCCCCGGGTAGTGGGAGGGGGGGGAGTTGCACCCCCACGTCCCTAAGAACACATCCGCCTGAAGCTAggtcct > 2:672386/1‑135 (MQ=21)
acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAGCTTACTTTATTTGATATCGCCGCTGTTGGTGCGAGGCGGGGGACTTGCACCCAAACGTCAGTAATAACAATAACCCCTAACGCTAgcgcct > 4:278651/1‑138 (MQ=21)
acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCAAAGTCATCTTACTTTTTTTGAAATCGCCACGGTGGGTGCGAGGGTTGGGCCTTGAAGCCCCTCGTCCATAATAACACATACACCTCAATCTacggg > 7:434988/1‑134 (MQ=21)
ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCCCAGTCATCTTACTTTTTTTGATATCGCCTCGTGTGGGGCGAGGGGGGGGACTTGAACCAGCACGTCCGAAAGAACTCAAACACCTGAAGCTAGCGATTCTa > 6:291374/1‑140 (MQ=37)
ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCAGAGTCATCTTACTTTTTTTGATTTGGACTCGGGGGGTGCGAGGGGGGGGACTTGCACCGCCACGTCCGTAGGAACACATACACCGCGAGCTAGCTCGTCTa > 6:388681/1‑140 (MQ=21)
tGAAGCTACCGCGTCAACAAATTCCGCCACCTA‑CCAACATGCATATAAATTTTTTTTATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAcc < 3:493265/140‑1 (MQ=18)
gatgCTCGCGCGTATACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCCCCTCGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCa < 2:1096853/137‑1 (MQ=25)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCAGATTACTTTTTTAGAGATCGGCTCTGTGGGTGCGAGGGGTGGGTCTTGAACCCCCACGTCCGTAATAACAAAACCACATAACGCTAAAGCGTCTACCa > 6:568885/1‑140 (MQ=19)
aGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCGTACTTTATTTGATATCGCCTCGTGTGGTGCGAGGGGGGGGTCTTGACCCCCCACGTCCGTAAGACCACTAACACCTGACGCTAGCGCGTcgagca > 7:815805/1‑133 (MQ=25)
aGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCTTCTTACTTTTTTTGATTTCGGCGCGGTGTGTGCGAGGGGGGGGCCTTTCACCCCCACGTGCTTAAGAACAAAAACACATGAAGGTAGATCCTCTACAAAttacc > 6:263713/1‑137 (MQ=255)
gcgcGGCTACCCATTCCGCCACCTT‑CTCACCGTCATCTTACATTTTTTGAACTCCCCTCTTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:833254/140‑1 (MQ=18)
ccccggcTACCAACACCGCCACCCA‑CCCACAGGCAACTAACATTTTTTGATATAGCCCCGGTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAATCCGc < 5:819159/134‑1 (MQ=14)
cgcgTCTACCAATTCCGCCACCTT‑CGCACAGGCAGAATACTTTTTTTGATATGGGCGCGGGGGGTCGGAGGGGGGGGGCTTTCACCGCCACGTCCGTAGGAACAATACCACCTGAGGCTAGTGCGTGTAACAAttaccac > 6:451888/1‑135 (MQ=255)
gTCTACCCTTTCCGCCCACTT‑CGCACCGTCATCTTACTTTATTTGATATCTCCGTGTTGGGGGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCa < 8:164398/138‑1 (MQ=17)
ctaTTCCGCCACATT‑CGCACATTCATATTACTTTTTTTGATATCCCTTCTTTTGGTGGGTGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 5:717326/138‑1 (MQ=18)
catttCCGCCACCTT‑CCCACAGGCATCTTATTTTTTTTGATATCGCCTCGTGGGTGGCGCGGGGGGGGAATTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGAGCGTCTACCAATTCCGCCACCTTCGcc < 1:794152/137‑1 (MQ=18)
cAATTCCTCGACCTT‑CCAACATTCATCTTACTTTTTTTTATATAGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 4:869410/140‑1 (MQ=17)
cAATTCCGCCAGCTTACGAATTGT‑ATCTTACTTTTTTTGTTTTAGGGTAGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 2:187475/140‑1 (MQ=14)
cAAATCCGCCACCTT‑CCCCAAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 3:418161/140‑1 (MQ=18)
atatcccGCCCCCTT‑CCCACAGTCATCTTACTTTTTTTGAATCCGCGCCGTTGGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 7:911461/133‑1 (MQ=17)
aaaatCCGCCACGTT‑CCAACAGTAATCTAAATTTTTTTTATTTCTCCTCTTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 6:173041/136‑1 (MQ=14)
aaaTTCCGCCACCTT‑CCCACAGTCATCTTAATTTTATTTATATCGCCTCGTTTGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 8:490283/137‑1 (MQ=18)
aaaTTCCGCCACCTA‑CGCACATGCTTATTACTTTTTTTTATCTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 8:1008516/137‑1 (MQ=17)
aaaTTCCGCCACCTA‑CGCACAGTCATCATACTTTTTTTGATTTCCCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 6:270839/139‑1 (MQ=18)
aaaTTCCGCCACCTA‑CCCACAGGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 2:898386/139‑1 (MQ=255)
aaaTTCCGCCACATA‑CCCAAATTCATATAAATTTTTTTTATCTCCCCTCTTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 1:789605/139‑1 (MQ=14)
aaaTTCCGCAACCAT‑CACAAAGTAATCTTACTTTATTTGATTTACCATCTTTTGGGCCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 7:459973/137‑1 (MQ=14)
aaaTTCCCCCACCTA‑CGCACAGTCAACTAACTTTTTTTGAAATCCCCACGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 6:35788/139‑1 (MQ=17)
tCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTTATATCGCCTCGGTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTACCACCTGAAGCTAGCGCGTCTACCAATTACGACACCTTCGcaaacg > 6:705565/1‑135 (MQ=18)
cGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGGCTTGAACCCCCACGTCCGTAAGAACACTAACACCTGACGCTAGCGCGTATACCAATTCCGCCCCCTTCGCCCAGTgg > 5:765937/1‑139 (MQ=255)
gCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGAGCGTCTACCAATTCCGACACCTTCGCACAGGGCg > 1:735405/1‑140 (MQ=255)
gCCACCTT‑CGCACAGTCAGATTACTTTTTTTGATATCGCCGCGTGTGGTGCGAGGGGTGGGCCTTGCACCCCCACGTCCGTAATAACACTACCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcacacgacg > 2:242783/1‑135 (MQ=17)
gCCACCTA‑CTAACATTCATCTAACTTTTTTTGATATCCCCTTTTTTGGGGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 2:82054/140‑1 (MQ=17)
ccACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGCACCCCCTCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCCTCTAACAATGACGCCACCTTCGCACAGTGCGa > 4:651756/1‑140 (MQ=21)
ccACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTGTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACACTGcca > 4:540170/1‑138 (MQ=255)
ccACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGGTTGGTGCGAGGGGGGGGACTTGCACCACCACGTCCGTAATAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCGTCGCACAggggga > 4:901376/1‑135 (MQ=18)
ccACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGACTCGTTTGGTGGGAGGGGGGGGACTTGAACCCCCACGTCCGGAAGAACACTAACACAGGAAGCTAGAGCGTCTACCAATTCCCCCCCCTTCGACAAGTGCGa > 5:1002897/1‑140 (MQ=21)
ccACCTT‑CGCACAGTCATCTTAC‑TTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTAAGCCCAGAGCGac > 3:794597/1‑139 (MQ=18)
ctccTA‑CGCACAGTCTACTTACTTTTTTTGATATCTCGTCTTTGGGCGAGTGGGGGGTGACTTCAACCCCCACGTCCGTAAGAACACTCTCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 1:1155630/138‑1 (MQ=17)
cACCTT‑CTTAAAGTAATCTTACTTTTTTTTATTACTCCTCGTTTGTTTCGTGGGGGGGGACTTTAACCCCCACTTCCGTAACAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 8:815805/138‑1 (MQ=17)
cACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 6:173143/140‑1 (MQ=255)
cACCTT‑CCAACAGTCAAGTAACTTTTTTTTATATCGCCTCTTTTGGTGCGTGGGGGGGTACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 2:1001566/140‑1 (MQ=17)
cACCTA‑CCCACAGTCAAGTAACTTTTTTTGATATCCCCTCCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 3:720060/140‑1 (MQ=17)
cACCAT‑CCCACATGCATATAAGTTTATTTGATATCGCGACGTTTGGGGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 1:1185533/140‑1 (MQ=14)
t‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACAAACACCTGAAGCTAGAGCGTCTACCAATTCCGACACCTTCGCCCACTGCGAGAAata > 2:11247/1‑140 (MQ=21)
t‑CGCACAGTCATCTTACTTTTTTTGATATCGCCGCGTGTGGTGCGAGGGGGGGGACTTGAACCCCCACGGCCGTATGTACACTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCAACCTTCGCCCACTGCGAGCTatt > 1:991189/1‑139 (MQ=18)
gCACAGTAATCTTACTTTTTTTGATATCGCCACCATTGGTGCGAGGGGGGGTACTTGAACCCCCACGTACGTAAGAACACTAACACAAGAAGCTAGCGCCTCTACCAATTCCCCCACCATCCCCGAGGGCGAgatata > 8:894626/1‑133 (MQ=255)
ccttaaTCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 3:211082/135‑1 (MQ=255)
gTCAACTTACTTTTTTTGTCATCGCCGTGCTTGGTGGGTGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGt < 2:219257/140‑1 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGTGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAATGCGAGAAATATAAACgag > 1:521697/1‑138 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCCGTGCGAGCTATATCAACGtt > 4:20831/1‑139 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGtt > 4:66133/1‑139 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTg > 1:216155/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAAGtt > 6:949163/1‑139 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATAAACGTg > 4:763208/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGACAGAAATATAAACGtt > 5:769556/1‑139 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCACACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTTCGCCCACTGCTAGAAATATAAACGTg > 3:1033686/1‑140 (MQ=18)
cATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg > 2:894581/1‑42 (MQ=255)
ataatttttttGATATCGACTAGTTTGGTGCGTGGGGGGGTATTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtt < 8:310849/134‑1 (MQ=18)
cTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCCAGCAATATAAACGTGGTTTTTgg > 4:50262/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCAAGTGAGATCAATATAAACGTGTTTTTTGGTg > 1:170735/1‑140 (MQ=18)
ttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc > 7:347493/1‑105 (MQ=255)
ttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGc < 8:347493/105‑1 (MQ=255)
ttgtGATATCGCTTCGTGTGGGGCGTGGGGGGGGACATGAACCCCCACGTCCGTAAGAACACTACCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCCGTGCGAGCAATATCAACGTGGTTTTTGGTGCg < 6:467375/137‑1 (MQ=18)
tGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACTGCGAGCAATATCAAAGAGTTTATTCGTGCGa > 8:502932/1‑138 (MQ=18)
aacccccTGGTTGGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTTAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAggggg < 5:291374/135‑1 (MQ=18)
tCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCAAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGaa > 8:400031/1‑137 (MQ=255)
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AGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGG‑ACTTGAACCCCCACGTCCGTAAGAACACTA‑ACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTT‑CGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGAC > NZ_CP022686/3461085‑3461358
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
