Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,461,223 |
G→T |
16.9% |
intergenic (‑32/+3) |
CIW80_RS17335 ← / ← CIW80_RS17340 |
tRNA‑Leu/tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,461,223 | 0 | G | T | 16.9%
| 162.7
/ 2.2
| 120 | intergenic (‑32/+3) | CIW80_RS17335/CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base G (55/38); new base T (5/21); total (61/59) |
| Fisher's exact test for biased strand distribution p-value = 3.39e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
AGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGA > NZ_CP022686/3461085‑3461362
|
acacaGGAACTAAAGAAAATTGGGGCGCGGGGGGGGACTTTACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGt < 5:1028120/136‑1 (MQ=18)
caaaGGAAGTAACTAAAATTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCg < 4:1069204/137‑1 (MQ=255)
agaaaaGATAATTGGGGCGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 4:777036/135‑1 (MQ=255)
gTAAACATATTTTGTGGGTTGTGGGGTACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTACCGCGTCTACAAATTCCGCCACCTTCTCACAGTCATCTTACTTTTTTTGATATCTCCTATTTTGGTGCGa < 6:566455/140‑1 (MQ=18)
caTACTTGGGGCTCGGGGGCGGCCTGCAACCCCCACGGCCGTAAGAACACTAACACCTGAAGCTAGCGCTTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggggg < 7:325738/139‑1 (MQ=21)
caTAATGGGGGCGGGGGGGTGTACTTGACCCCCCACGGCCGTAAGAACACTACCACCTGCAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACATTTTTTGATATCGCCTCGTTTGGTGCGAggggg < 6:505929/139‑1 (MQ=21)
aaTAATGGGTGCGAGGGGGGGTCCTTCCACCCCCACGTCCGTTAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATTTCGCCTCGTTTGGTGCGAggggg < 5:1049638/139‑1 (MQ=21)
atatTTGGGGCGTGGGGGGGGCCTTCAACCCCCACGTCCGTAAGAACACTAACACCTGCAGCTCGCGCGTCTACCAATTCCGCCACCTTCGCACAGGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg < 2:308271/140‑1 (MQ=21)
aaTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCAAAGTCATAATACTTTATTTGATATGGTCGCGGGTAGGGGGAgggggggg > 5:668076/1‑140 (MQ=14)
aaTTGCGGCGCGGGGGGCGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGCAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg < 3:1090645/138‑1 (MQ=21)
ggggCGAGGGGGGGCACTCTACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACtt < 7:915490/137‑1 (MQ=21)
tgctcggggggggAGTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGa < 7:404226/135‑1 (MQ=255)
gcgctggggggggACTTGACCCCCCACGGCCGTAATACCACAAACACCTGAAGCTATCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGa < 5:9494/135‑1 (MQ=21)
gctaGGGGGGGCATTCGAACCCCCCCGTCCGTAATACCACTACCACCTGAAGCTAGCGCGGCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGAAATCGCCTCGTTTGGTGCGAGGGGGGGGACTTg < 4:129057/135‑1 (MQ=21)
cGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGATTACTTTATATGATATAGACTCGTGGGGGCCGAGGGGGGGGAGTTGAAc > 5:718917/1‑140 (MQ=17)
aGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCTGCTTACTTTATTTGATTTGGGCGCGGTTGGGGGGATGGGGGGGGCTTGCAccc > 8:43420/1‑140 (MQ=14)
caaCCCCCACGTCCGTAACAACACTAAAACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCATCCCACATACATCTTACTTTTTTTGATATCGCCACGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 8:857233/139‑1 (MQ=25)
ccACGTCCGTTATAACCCTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCCAACAGTCATCTTACTTTTTTTGATTACGCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 2:684965/140‑1 (MQ=25)
ccGTTAGAACACTTAAACCTGATGCTAGCTCTTCTACAAATGCCGCCACCTTCGCACATTCATCTAACTTTTTTTGATATCCCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAaca < 4:25130/138‑1 (MQ=21)
ccGTAAAAAAACTACAACCTGCCGCTAGCGCTTCTACAAATTCCCCCACCTTCCCTCAGTAAAGTTACTTTTTTTTTTATCGCCTTTTTTGGTGCGTGGGGGGGTACTTTAACCCCCACGTCCGTAAGAACACTAACAcc < 2:335670/140‑1 (MQ=16)
cGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGATTACTTTATTAGATTTCGCCCCAGTGGGGGCCAGTGGGGGGACTTGAACCCCCTCGTCCATAAGAACACATACACCt > 8:567476/1‑140 (MQ=18)
tAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAACTTACTTTATTAGATATAGACTCGTGTGGTGGGAGGCGGGGGGATTTAACCCCAACGTCATTACTAAAACTAACCCCtca > 5:249132/1‑138 (MQ=12)
aGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATGGCCACTGGTGGTGCGAGGGGGGGGGCGTGAACCCCCCCGAACGAAAGAACACAAACACCTGa > 4:373579/1‑138 (MQ=21)
cacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTTTTTTATTTCGGCGCGGTTGGGGCGAGGGGGGGGAGTTTCACCACCACGTCCGTAGTTAAACTAACACCTGACGCTat > 1:346591/1‑139 (MQ=21)
acTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTATTTGATATCCACTCTTTTGGTGCGAGGCGGGGGACTTTCACACACACGTCCATAAGAACACAACCACCTGAAGCTAga > 5:97662/1‑139 (MQ=25)
tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACACTCAGCTTACTTTTATTGATATCGACGCGTGTGGTGCGAGGGGTGGGCCTTTAACCCCCACGTCCGTAATAACAATAACTCCTGACGCTAgcgg > 2:544131/1‑139 (MQ=25)
aaCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGAATACTTTTTTTGATATCGAAACGTTTCGTGCGAGGCGGGGGCGTTGAACCCCCTCGTCCTTAATAACAATACCACCTTAAGCTAgagcc > 5:28451/1‑139 (MQ=21)
acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTAGATATCGAAGCGTGTGGGGCGAGGGGGGGGCCTTGAACCCCCACGTCCTGACGAACAATTACCCCGAAATCTAGCGCGt > 2:317206/1‑140 (MQ=21)
acacCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGATTACTTTATATGATATCTCCTCGTCTGGTGGGAGGCGGGGGACGTGCACCACCGAGTACGTAAGAACACTAACACCTGCAGCTAgatc > 4:964818/1‑135 (MQ=21)
acCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGACATCTTACTTTTTTTGATATCGTATCTGTTAGTGCGATGCTGGGGCAGTGAACCACCACGTCCATAATAAATAATACACCTGAATCTAGCTCGt > 4:290719/1‑138 (MQ=16)
ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTATTAGATATCGCCGCGGTGGGGGCGAGGGTGGGGACTTGCACCCCCACGTCCTTAAGAACACTACCCCATGTAGCTACCTCGTCTa > 7:59170/1‑140 (MQ=25)
ccTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCAAAGTCTGATTACTTTTATTGATTTGGAAGCGGTGAGGGGGAGGGGGGGGACTTGCACCGCCACGTCCGTAAGTACACAAACACATGAATGTAGCTCGTCTa > 8:371377/1‑140 (MQ=16)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTAATCTTACTTTTTTTGATTTCGGCTCGGTTGGTGGGAGGGGGGGGACTTGCACCACCACGTCCGTAAGAACTCATACCCCTTACGCTATCGCGTGTACCa > 5:1033777/1‑140 (MQ=25)
aGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCGCGTTTGGTGCGAGGGGGGGGTCTTGAACCACCACGTCCGTAAGAACACAAACTCCTTAAGCTAGCGCCTCTAcaa > 3:507271/1‑136 (MQ=25)
aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCg > 7:1041190/1‑140 (MQ=255)
aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTTATTGATTTGGACTCTGTTGGTGCCAGGGGGGGGGCTTGCACCCGCACGTCCGTAAGAACACTAACACCTGACGCTACCGCGTCTACCAATTCCg > 8:337567/1‑140 (MQ=18)
aGCGCGTCTACCAATTCCGCCACCTTCGCACAGACAGATTACTTTTTTAGATATAGCCTCGAATCGGGCGAGGGGGGGGCCTTGAACCACAACTTCCTTAAGAACACTAACACATGACGCTAAAGGCTCTAACAATTCCg > 2:132490/1‑140 (MQ=19)
aGCGCGTCTACCAATTCCGCCACCTTCGCAAAGTCATATTACTTTTAATGATATCGACTCGATGTGGGGGAGGGGTGGGAATTGAAACAACTCGTCCGTAAGTACACAAACACATAAAGCTAAAGCGTCTACCAAttacc > 6:1082020/1‑137 (MQ=255)
gctcggcTACCAATTCCGCCACCTTCCCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 5:670527/134‑1 (MQ=255)
gcgcGTCTACCAATTCCGCCACCTTCCCACAGTCATCTAACTTTTTTTGATATCGCCTCTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:981209/140‑1 (MQ=255)
gcgcGTAAACCAATTCCGCAACCTTCGCACAGTCATCTTACTTTTTTTGAAATCGCCTCTTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 1:732460/140‑1 (MQ=21)
cggcgTCAACCAATCCCGCCACCTTCCCACATTCAACTAACTTTATTTTATTTCCCCCCGTTTGGTGCGCGGGGGGGGACTGGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTcc < 3:776285/136‑1 (MQ=17)
cgccgTCTACCAATTCCGCCACCTACCCACAGTCATCTAACTTTTTTTGATATCTCCTCGTTTGGGGCGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 6:475025/137‑1 (MQ=21)
cctcgTATACCAATTCCGCCACCTTCGAACAGTCATCTTACTTTTTTTTAATTCGCCTCTTTTGGTGCGAGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 8:911428/137‑1 (MQ=18)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGGCCGTAAGAACACAAACCCCTGAAGCAAGCGCGTCAACCAATTccc > 3:43476/1‑137 (MQ=25)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATAGAATCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTTACACCTGAAGCTAGCGCGTCTACCAATTACg > 4:923594/1‑138 (MQ=21)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATATTACTTTTTTTGATTTCGAAGCGTTTGGTGCGAGGGGGGGGTATTTCACCACAACGTCATTAATAACACTAACACCTAAAGCTAGATCGTCTACCAATTCCgac > 2:780809/1‑138 (MQ=21)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATATTACTTTTATTGATTTCCACACGGTTGGTGCGAGGGTGGGGAATTGCACCGCCACGTCCGTAATAAAAATAACACAGGACTCTAGAGCCTCTACCAATTCCgac > 8:361311/1‑138 (MQ=16)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCAACTTACTTTTTTTGATATCGGCTCGTTTTGTGCGAGGGGGGGGCCTTGAACCCCCACGTCAGTAAGAAAACTAACACCTGACGCTACAGCGTCTACCAATTCCg > 4:552713/1‑138 (MQ=25)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCAACTTACTTTTTTTGATATCGCAGCGGTTTGGGCGAGGGGTGGGACTTGCACCACCCCGTCCGTAAGAACAAAAACCCCTGAAGCTACCTCGACATCCAAATCCg > 3:839038/1‑138 (MQ=255)
cgcgTCTACCAATTCCGCCACCTTCGCACAGACAACTTACTTTATTTGATATCGCAGCGTGGGGTGCGAGGGGGGGGGATTGCACCGCAACGTCCGTAAGAACAAATAGACCTGAAGGTAGCTCCTGTACCAAttacccc > 6:575506/1‑135 (MQ=255)
cgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTATTATTGATATCGACGCGTGTGGTGCGAGGGGGGGGACATGAACCCCCAAGTCCGGAAGAACACGAACACCTGAAGCTAGCGCGTCTACCTATTCCGcc > 3:589296/1‑138 (MQ=21)
cgTCTACCAATTCCGCCACCTTCGCACAGTCATCTAACTATTTTTGAAATCGCCGCGTGTGTTGCGAGGGGGGGGACAGGAACCCCCCCCTCGGTACGAACACTTACCCCTGAAGCGAGCGCGTCTACCAATTCCGcc > 3:589297/1‑138 (MQ=21)
tCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATAGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCt > 5:484802/1‑140 (MQ=255)
tACCAATTCCGCCACCTTCGCACAGTCAACTTACTTTTTTTGATATCGCCGCGGTGGGTGCGAGGGGGGGGCCTTGACCCCCCACGTCCGTAGGAACAATTACACCTGAGGCTAGCGCCTCTACCAATTACGCCCCCt > 3:1020426/1‑138 (MQ=21)
tACCAATTCCGCCACCTTCGCACAGTCAACGTACTTTTTTTGATATCGCCTCGTTTTGTGCGATGCGGGGGCCTTGAAGCACCACGTCCGTACGAACACTAAGCCATGAAGCTAGCGCGTCTTCCCATTGCGCCACCt > 4:303919/1‑138 (MQ=21)
cAATTCCGCCACCTTCCCACAGTCATCATAATTTTTTGTAAATCGCCAGGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCg < 4:280247/138‑1 (MQ=17)
cAATTCCGCCACCTACCCCCAGTCATCTAAGTTTTTTTGATATCCCGTGGTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 6:856887/140‑1 (MQ=17)
tCCGCCACCATCGCACAGTCATCTAACTTTTTTTTATATCGCCTCTTTTGGGGCGAGGGGGGGGACTTCACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt < 1:577167/140‑1 (MQ=18)
cccGCCACCTACGCACAGGCAACTCACTTTTTTGGCACTCGCCTCTTGGGGGGCGCGGGGGGGGACTTCAACCCCCACGGCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt < 5:167452/139‑1 (MQ=14)
accGCCACCTACGCACAGTCATCAAACTTTTTTTGATATCGCCGGTTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt < 2:562010/139‑1 (MQ=17)
accGCCACCTACCCACAGTCAACTTACTTTTTTTGATATCGCCTCTTTTGGGGCGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGt < 2:988934/139‑1 (MQ=18)
ccGCCACGTTCGAACAGTCAGTTAATTTTTTTTTATATGCCCGCTGTTGGTGCGGGGGGGGGTACTTGAACCCCCACGGCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg < 5:182495/140‑1 (MQ=14)
ccGCCACCTTCCCACAGCAATCATACTTTTTTTGATATCCCCCCTTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg < 4:510038/138‑1 (MQ=17)
ccGCCACCTTCCACCATTCATCTTACTTTTTTTGATCTCCCCTCGTGTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg < 4:515512/138‑1 (MQ=17)
cacaTTCGCACAGTCATATTACTTTTTTGGATATCCCCTCGTTTGGTGCGCGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 1:966665/140‑1 (MQ=18)
cACCTTCGCACAGTCATCTTACTTTTTTTTATATCGCCGGGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 3:276703/138‑1 (MQ=255)
cACCTTCGCACAGTCATCATACTTTATTTGATATACCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCTCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 7:620385/140‑1 (MQ=18)
cACCTTCCCACAGTCATCTTACTTTTTTTGATATCGCCTGGTTTGGGGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 4:367530/138‑1 (MQ=255)
cACCTACGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGGGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCg < 4:1121162/138‑1 (MQ=255)
cACCTACCCACAGGAATCATAATTTTTTTGAAATCCCCTCTTTTGGGGCGCGGGGGGGGACTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 7:1023788/140‑1 (MQ=17)
attCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTAGCCCAGTGCGAGCaa < 1:15641/139‑1 (MQ=255)
ttCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGAATAAAAATTACTCCACCAACGCCCACTGCGAGCAat > 1:734115/1‑140 (MQ=21)
catccATCTTACTTTTTTTGAAACCCCCTCGTGTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 1:247840/136‑1 (MQ=18)
catccATCTAACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 6:274545/136‑1 (MQ=255)
caGTCATCTTACTTTTTTTGATTTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 2:136982/140‑1 (MQ=255)
caGTCATATTACTTTTTTTTATATTCCCGCTTTGGGCGCGGGGGGGGGGATTTTCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 1:136086/140‑1 (MQ=17)
ttCATATTAATTTTTTTGATATCGCCTGTTTTGGGGCGTGGGGGGGTACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGt < 1:387938/139‑1 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTTGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAAAACTAACACCAGAAGCAAGCGCGTATACCAATTCCGCCACCTTCTCCCAAATCCAGCAATATAAAAGTg > 1:1142119/1‑140 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGCGGGGGGGGACTTGAACCCCCCCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTACGCCACCTTCGCCCAGACACAGCAATATAAACgat > 6:357083/1‑138 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGCCTTGAACCACCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGGGCGATCAATATAAACggg > 2:855281/1‑138 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGCGAGAAATATCAACGTg > 2:1117006/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTGCGAGCAATATAAACGTg > 1:502042/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCAAAGCACGAGATATATAAACgat > 8:555100/1‑138 (MQ=17)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAAAACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGACAGCAATATCAACGTg > 5:334144/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTACGTAAGAACACGAACACCTGAACCTAGCGCGTCTACCCATGACGCCACCTTCGCCCAGTGCGATCAATATCCACGTg > 6:44805/1‑140 (MQ=21)
taaCTTTGTTTGAAATCCCCTCGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGGCCGTAAGCACACTAACACCTGAAGCTAGCGCGGCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGGGGtttt < 8:737440/138‑1 (MQ=18)
atACATTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGtttt < 8:737439/139‑1 (MQ=255)
cTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGAGAGCAATATCAACGTGGTTTTTgg > 7:1025035/1‑140 (MQ=255)
cTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGATGAGGGCGACCAATATAAACGGTGTTTTTgg > 6:62556/1‑140 (MQ=17)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGCCTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg > 7:580681/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGACCACTAACACCTGAAGCTAGCGCGTCTACCAATTACGCCACCTTCGCCCACTGCGAGAAATAACAACGTGTTTTTTGGTg > 2:875882/1‑140 (MQ=18)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCTATATCAACGATGTTTTTGGTg > 5:884809/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg > 8:227343/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAAGTGGTTTTTGGTg > 6:585507/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGAATTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGTTTTTTGGTg > 5:813288/1‑140 (MQ=255)
ttttgtatatCGCCTCGTTTGGCGCG‑TGGGGTGGATTTGACCCCCCACGTCCGTAAGAAAACTAACACCTGACGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCATTGCTAGCAATATCAACGTGGTTTTTGGTg < 3:432890/132‑1 (MQ=18)
ttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCg > 3:711382/1‑138 (MQ=255)
acacGCCTCTTATGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGGAATAACACTAACACCTGAAGCTCGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCTAGCAATATCAACGTGGTTTTTGGTGCGAggggg < 7:790671/137‑1 (MQ=18)
ccTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCCCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCAGCCACCTTCGCCCAGACGGAGCAATATAAACGAGATTATTGGAGCGAggggggtgca > 2:648405/1‑136 (MQ=17)
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AGAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGA > NZ_CP022686/3461085‑3461362
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
