Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F2 I0 R1
|
233 |
6461.8 |
9239822 |
98.3% |
9082745 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,461,223 |
G→T |
10.1% |
intergenic (‑32/+3) |
CIW80_RS17335 ← / ← CIW80_RS17340 |
tRNA‑Leu/tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,461,223 | 0 | G | T | 10.1%
| 213.9
/ 3.3
| 146 | intergenic (‑32/+3) | CIW80_RS17335/CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base G (56/65); new base T (3/19); total (61/85) |
| Fisher's exact test for biased strand distribution p-value = 4.30e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 146 total aligned reads displayed.
GAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGAC > NZ_CP022686/3461086‑3461358
|
aaaaGTAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGtt < 3:849110/139‑1 (MQ=255)
aaaGCAAGTAAAGATAATTGGTGCCAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGttt < 2:832685/140‑1 (MQ=255)
accaaaaaGAAACTGGGGGCGAGGGGGGGCACGTCAACCCCCACGTCCGTAAGACCACTAACACCTGAAGCTAGCGCTTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 8:245769/135‑1 (MQ=18)
attacaGATAATTTGGGCGCGGGGGGGGCACTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTg < 5:927866/133‑1 (MQ=18)
caTAATTGGCGCGGGGGGGGCCACTACAACCCCCACGTCCGTAAGAACCCTACCACCTGAAGCTAGCGCGTCTACCCATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAggg < 5:219178/137‑1 (MQ=21)
aaTAATGGGTGCGGGGGGGGGGCCATCACCCCCCACGTCCGTAAGAACCCTACCACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATCTCGCCTCGTTTGGTGCGAggg < 6:177987/137‑1 (MQ=21)
atactgggTGCCTGGGGGGGGCCTCCCCCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAgggggg < 2:198296/134‑1 (MQ=21)
aaTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCGGACTTTTTTTGATATCGCCTAGTTTGGTGCGAgggggggg > 2:960465/1‑140 (MQ=255)
gtcgcggggtgtgACTTGAACGCCCACGTCCGTTTGACCCCTAACCCCTGAAGCTAGCGCGTCTACCAATTCCGCCACCGTCGCACAGTCATCTTACTTTTTTTTTTCTCGACTCGTTTGGTGCGAGGGGGGGGACtt < 5:58611/133‑1 (MQ=18)
ggcgcGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGGCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGa < 4:762221/139‑1 (MQ=255)
ggcccgggggggtACTTGAACCCCCACGTCCGTAATAACACAAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCATCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGa < 1:934570/135‑1 (MQ=25)
gctcgggggtgtACTTTCACCCCCACGTCCTTAATAACACAAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGaa < 2:48073/136‑1 (MQ=21)
cGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCCCCTTCGCCCAGTCCTCGTACTTTGTTTGCTATCGCCGGGGTTGGTGGGAGGGGGGGGCCTGGAAc > 3:354638/1‑140 (MQ=14)
gtgtccTTCAACCCCCACGGCCGTAATAACACTAACACCTGAAGCTACCGCTTCAACCAATTCCGCCACCTACGCACATTCATCTTACTTTTTTTGATATCGCCGCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACg < 4:132227/135‑1 (MQ=25)
gggttcTTGAACCCCCACGTCCGTAACAACAATAACACCTGAAGCTCCCCCGTCTACCAATTCCGCCACCATCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACg < 4:471866/135‑1 (MQ=25)
ggACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATAGCCGCGTTTGGTGCGAGGGGGGGGACTGGCACCCCCACg > 5:553378/1‑138 (MQ=255)
ggACTTCACCCCCCCCGGCCGAAAGACCCCAAACCCCTGACGCTAGCGCGTCTACCAATGCCGCCCCCTTCCCACAGGCATCTAACTTTTTTTTATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc < 4:681396/140‑1 (MQ=25)
gcatggcaaCCCCCACGTCCCTAACAACACAAACCCCTTCAGATCGCCCGTCTACAAATACCCCCACCTTCGCACAGTCATCTTACTTTTTTTTAACTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTc < 2:969089/133‑1 (MQ=25)
cttcaccccccACGTCCGTAAGAACACTAAACCCTGAACCTAGCGCGGCTACAAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCGCGTTTGGTGCGAGGGGGGGGACTGGAACCCCCACGTcc < 6:652057/132‑1 (MQ=25)
ccccccccACGGCCGTAAGACCACTAACACCTGATGCTAGCGCGTCTACCAATTCCGCCACCTTCGAACAGGAAACTTACTTTTTTTGATATCGCGTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 8:802046/137‑1 (MQ=25)
cacccccccCGTCCGTAAGAACAATAACACCTGATGCTAGCGCGTATACCAATTCCGCCACCTTCTCACAGGCATCTAACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 4:1002422/137‑1 (MQ=37)
caccccccACGTCCGTAAGAACACTAACACATGAAGCTAGCGCGTCAACCAATCCCTCCACCTTCGCACCGGCATCATCCTTTTTTTTATATCGCCTCGTTTGGGGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 8:760170/137‑1 (MQ=21)
caccccccACGACCCTAACAACACTAACACCTGAAGCTCGCGCGCCTCCCAATACCGCCACCTACCCCCAGACATCTTACTTTTTTGCATATCGCCTCGTTGGGTGCGAGGGGGGGGACTTGACCCCCCACGTCCGTAAg < 3:31265/137‑1 (MQ=21)
caaCCCCCACGTCCGAAAGAACACACACACCTGCAGCTAGCCCGTCTACCAATTCCGCCACCATCCCACAGCCACCTTCCTTTTTTTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAg < 8:1086233/139‑1 (MQ=25)
ccACTTCGGTACGACCCCTCACACCTGAAGCTAGCGCGTCTACCAATCCCGCCACCTTCGCACATTCATCTTACTTTTTTTGATCTCGCCGCTTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 4:687960/140‑1 (MQ=25)
aCGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTATTTGATATATCCACCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa > 1:1188267/1‑140 (MQ=25)
aCGTCCGTAACAACACTAAAACATTAAGCTTGGGCGTATACCAATTCCGCCACCTTCCCACAGTCATCTAACTTTTTTTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACt < 6:574003/138‑1 (MQ=37)
aCGTCCGAAACAACACTAACACATGACGCTAGCCCGTATACCCATTCCGCCACCTTCCCACAGTCATCTTACTTTTTTTGATTTCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTaa < 4:460466/140‑1 (MQ=37)
gTAATAACACTAACACCTTATGCTAGCGCGTCTATCTAAGCCGCCACATTAGCACAGTAATCTTACTTTTTTGTTTATCTCCGCGTTTGGTGCGTGGGGGGGGAGTTGAACCCCCACGTCCGTAAGAACACTAACACCtt < 8:823797/140‑2 (MQ=18)
gTAAGAACACTAACACCTGAAGCTAGCGCGTATACCAATTCCGCCACCTTCGCACAGTGTTCTTACTTTTTTTGATATGGCATCGATTGGTGCGAGGGGGGGGACTTGCACCACCTCGTCCTTAAGTACACGAACACATg > 4:508524/1‑140 (MQ=21)
acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTATTAAGATATCGCATCTGTGGGTGGGAGGGGGGGGGCTTGCACCCCCACGTCCGTAATAACACGACCACCTGAAGcaa > 4:137136/1‑138 (MQ=21)
tAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCTGCTTACTTTTTTTGATATCGGCGCGGGTGGGGCGAGGGGGGGGAGTTTCACCGCCACGTCCTTAGTAAAAAAAACACCTGTCGCTAga > 6:442661/1‑137 (MQ=16)
aaCACATTAAGCTCTCGCGTCAACCAATTCCGCCCCCTTCCCACATTCATCTAAATTTTTTTGAAATCCCCTCTTTTGGTGCGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAgcg < 5:1108626/138‑1 (MQ=18)
tGAAGCAAGCGCGGCTCCCCAATCCCCCCCCTTCGACCAGGCATCTCACTTTTTTTTAAATCGCCTCTCTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTa < 6:860441/138‑1 (MQ=17)
tcagctagctCTTCTACAAATACCGCAACCTTCCCACATTCCTCTACCTTTTTTTGATTTCGCCTCTTTTGGTGCGCGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTAc < 6:351998/136‑1 (MQ=17)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCACGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGTAAACATCCCCCTGAAGCTAGAGGCTCTACCa > 4:779840/1‑140 (MQ=37)
gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCAAACTCATATTACTTTTATTGATATAGGCGCGTTGTGGGCGAGGCGAGGGCATTGCACCACAACGTCAAAAAGAACAGAACCACCTAAAGCTACGGCGTCTACCa > 4:271114/1‑140 (MQ=12)
tAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTTTTTGATATCGGCTCGGTTGGTGCGAGGGGGGGGCGTTGAACCAGCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCGACCAATTcc > 3:486229/1‑140 (MQ=25)
tactcggcTACCAATTCCGGCACGTTCTCACAGGCATCTATCTTTTTTTGATCTCCCGTAGTTGTGGGCGAGGGGGGGTTCTTGACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCg < 2:841412/133‑1 (MQ=9)
aGCGCGTCTACCAATTCCGCCCCCTTCGCACACGCATCTTACTTTTTAAGAGATCGCAGCTGGTGGGGCGAGGGGGGGGACTTGCACCCCAACGTCCGTACGAACAAAAACACCTGACGCTAGGGCGTCGACCAATTccc > 8:974704/1‑139 (MQ=16)
aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCATACTTTAATTGAAATCGACGCGGTTGGGGCGAGGCGTGGGGATTGAACCACAACGTCCTTAAGAACACAACCACCTTACGCTAGATCGTCTACCAATTACg > 2:534196/1‑140 (MQ=255)
aGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTATTAGATTTGGCAGCGGGTGGTGCGAGGCGGGGGACTTGCACCCCCACGTCCTTAATAACAAAAACACCTAAAGCTAAAGCGTCTACCAATTCCg > 4:1125985/1‑140 (MQ=16)
tcccgTCAACCAATTCCGCCACCTACTCACAGTCATCAAACTTTTATTGATATCGCCTCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 4:1144740/137‑1 (MQ=18)
ccgcgTCTACCAATTCCGCACCCTTCCCCCTGCCATCTAACTTTTTTTTATATCCCCTCGTTCGGTTCGAGGGGGGGCACTTCACCCCCCAAGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 7:131538/139‑1 (MQ=18)
ccgcgTCTACAAATTCCGCCACCATCCCACATTCATCTTACTTTTTTTGATTTCCCCACGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 2:894622/139‑1 (MQ=18)
ccgcgACAACCAAGTCCCACACCTTCCCAAAGTCCACTATCTTTATTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGCACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGc < 7:662417/139‑1 (MQ=14)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCTTCTTACTTTTTTTGATTTCGGCGCGGTTGGGGGGAGGGGGGGGGCTTGCACCCCCACGTCCGTAAGAACAGTAACGCCTGAAGCTAGATCGTCTACCAATTCCGcc > 2:1091248/1‑140 (MQ=21)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTTCTTTTTTTGATATCGCCTCGTTTGGTGGGAGGGGGGGGAGTTGCACCCCCACGTCCGTAAGAAAACATACCCCAGAAGCTAGCGCGTCTACAAAtgacccc > 2:619136/1‑134 (MQ=25)
cgcgTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTACGcc > 3:781890/1‑140 (MQ=255)
cgcgTCTACCAATTCCGCCACCTTCGCAAAGGCAGCTTACTTTTTTTGATTTCGGAACGGGTGGGGCGAGGGGTGGGACTTGCACCCCCACGTCCTTAAGAACACATCCACCTGACGCTAGAGCGTCTACAAATTCCGcc > 2:267737/1‑140 (MQ=16)
cgTCTACCAATTCCGCCACCTACGCACACTCAACATACTAATTTTGATTTCGCAGGCTGTCGTGGGAGGCGAGGGGAATGAACCCCCACGTCAGTAAGAAAACATCGCCCTCTAGCTAGCAGGTCTAACAATTCCGcc > 6:407348/1‑138 (MQ=255)
ttatACCAATTCCGCCACCATCCCACACTCATCTAACTTTTTTTGATCTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCa < 6:275797/135‑1 (MQ=18)
ttCTACCAATTCCGCCACCTTCGCACAGTCATATAACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc < 4:534671/139‑1 (MQ=255)
gacatacAATTCCGCCACCATCCCACAGTCATCTTACTTTTTTTTATATCCTCTCTTTTGGGGCGCGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc < 2:1004602/134‑1 (MQ=18)
gTCTCCAAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCCCCTCTTTTGGTGCGAGGGGGGGTACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCAcc < 7:93785/140‑1 (MQ=21)
tCTACCAATTCCGCCACCTTCGCACAGTCAGCTTACTTTTTTTGATATCGCCTCGGTTGGTGCGAGGGGGGGGGCTTGAACCCCCACGTCCGTAAGAACACTACCACCTGACGCTAGCGCGTCTACCAATTACGCCaacg > 1:1179878/1‑137 (MQ=21)
ccAATTCCGCACCCTTCGCCCCGTCTTCATACTTTTTTTGATATCGGCTCGTTTGGGGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTc < 6:310801/138‑1 (MQ=17)
cAATTCCGCCACCTTCCCACATTCATCTTACATTTTTTGAAATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 8:1002412/140‑1 (MQ=18)
cAATTCCGCCACCTTCCCACAGGCATCTTACATTTTTTGATATCGCCTCGTTTGGTGCGCGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 8:723579/140‑1 (MQ=255)
cAATTCCGCCACATTCGCACAGGCATTTTACTTTTTTTGATATGTCCTATTTGGGTGCGAGGGTGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 2:615705/140‑1 (MQ=17)
cAATTCCGCCAATTACCCACAGTCATCTTACTTTTTTTGATATCCCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 4:13268/140‑1 (MQ=18)
cAAGTCCGCCCCCACGGCCCAGTCATATTACTTTTTTTTATAGAGCCTAGTTGTGTGCGAGGGGGGGTAATATAACCCCCACGTCCGTAATAACACTAACACCTGAAGCTTGCGCGTCTACCAATTCCGCCACCTTCGcc < 7:544879/140‑1 (MQ=9)
acaTTCCGCCACTTACCCACAGTCATATAACTTTTTTTTAACCGGCCTCGTTTGGGGCGTGGGGGGGTACTTTACCCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 7:119916/138‑1 (MQ=14)
aaaTTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGTGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGcc < 2:276547/139‑1 (MQ=255)
tCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATTTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTATAGCGTCTACAAATTACGCGCCCTTCGCCAAgg > 4:264066/1‑139 (MQ=21)
ccGCCACCTTCCCACATGCATCAAACTTTTTTTGATATCCCCTCCTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg < 6:16563/138‑1 (MQ=17)
ccGCCACCTACCCACAGGCATCTTACTTTTTTTTATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTg < 3:132497/140‑1 (MQ=255)
ccGCCACATTCCCCACGTCATCTAACTTTTTTTGATCTCGCCTCTTTGGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAg < 6:202006/138‑1 (MQ=17)
ccACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGGTTGGGGCGAGGGGGGGGCCTTGCACCCCCACGTCAGTAAGAACACTACCACCTGAAGCTACCGCCTCTACCAATTCCGCCACCTACGccaactaa > 6:677239/1‑132 (MQ=18)
ccccTTCGCAATGTCTTATTACTTTTTTTGAATTCGCCTTGTTTGGTGCGTGGGGGGGGACTTTAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 1:960465/138‑1 (MQ=17)
cACCTTCGCACAGTCATCTTACTTTTTTTGATCTCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 4:901198/140‑1 (MQ=255)
cACCTTCCCACATTCATCTTACATTTTTTGATTACGCCACTTTTGGTGCGAGGGGGGTGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 8:318950/140‑1 (MQ=17)
atccTACGCACAGTCATATTACTTTTATTGAAAGCGCGTGTGTTGGGGCGAGGGGGGGTACTTTAACCCCCACGTCCGTAATAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAg < 8:939125/138‑1 (MQ=14)
aCCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCgc > 5:310801/1‑137 (MQ=255)
tCGCACAGTGATCTTACTTTTTTTGATATCTCCTCGTTTGGTTCGAGGGGGGGGTCATGAACACACACGTACGTTAGCACACTAACACCTGAAGCTAGAGCGTCTAACAATTCCGCCCCCTTAGCCCAGTGCGAACAatt > 2:405372/1‑139 (MQ=18)
tCGCACAGTCATCTTACTTGTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACCCTAACACCTGAAGCTAGCGCCTCAACCAATTCCGCCCCCTTCGCCCAGGGCGAGGAatt > 2:148156/1‑139 (MQ=18)
cacaGTCATCTTAATATTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGAAAGAACACAAACACCAGAAGCTAGAGCGTCTACCAATACCGCCACCTTCGCCCAGGgcgcgctcaaa > 6:823229/1‑133 (MQ=18)
caGCCATCTTACTTTATTTGAAATCCCCCCGTTTGGGGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAAc < 2:504158/140‑1 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGGGCGAGCACTATCAACGTg > 4:902683/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGCGAGCAATATCAAAGTg > 4:892957/1‑140 (MQ=255)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACTGACATCAATATAAACgat > 1:777621/1‑138 (MQ=18)
tCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCAGCCACCTTCGCCCAGTGCGAGAAATATAAACgat > 8:191690/1‑138 (MQ=255)
tCTTACTTTTTTTGATATCTCCTCGTTTGGAGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAAATCCGCACCCTTCGCCCACTGACAGCAATAAAAACGTAGtt > 2:987138/1‑140 (MQ=17)
tCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCACAGAGACCAATATAAAAGTGGtt > 8:4259/1‑140 (MQ=18)
cTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGAGCGAGATATATAAAAGTTGttt > 2:322095/1‑140 (MQ=18)
aatACTTTATTTGATACAGCCTCGTTTGGTGGGTGGGGGTGGACTGGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGttt < 8:170408/138‑1 (MQ=18)
ttttttGATATCGCCTCGTTTGTTGCGAGGTGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCTCGTATACCAATTCCGCCACCTTCGCCCAGACCGATCAAAATCAACGTGCTATTAGGTg > 8:586435/1‑140 (MQ=17)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGATAAATATCAACGAGGTTGTTGGTg > 2:460393/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg > 7:223123/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg > 1:413918/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCATCGCCAAGTGCGAGCAATATCAACGTGGTTTTTGGTg > 7:828141/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCAAGTCCGTAAGAACACTAACACCTGAAGCTAGCGCTTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTg > 1:1129207/1‑140 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGA‑GGGGGGGACTTGAACCCCCACGTcc < 6:795887/53‑1 (MQ=255)
ttttttGATATCGCCTCGTTTGGTGCGA‑GGGGGGGACTTGAACCCCCACGTcc > 5:795887/1‑53 (MQ=255)
ttttGATATCGCCTCGATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGAGAGCAATATCAAAGTAGTTTTTGGTg > 5:950573/1‑138 (MQ=255)
ttttGATATAGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCCCGTCCGTAAGAACAATAACACCTGAAGCTAGCGCGGCTAGCAATTCCGCCACCTTCGCCCAGAGAGCGGACTATCAACGTGGTTTTTGGTg > 6:878949/1‑138 (MQ=17)
tttgGATATGCCCTTGTTTGGTGGGTGGGGGGGCACTTGAACCCCCCCGTCCGGAAGAACACTAACACCTGAAGCTACCGCGTCAACCAATTCCGACACCATCGCCCCGTCCGAGCAATAACAACGTGTTTTTTGGTGCg < 2:435949/140‑1 (MQ=17)
tttGAAATCGCGGCGGGTGGGGCGTTGGGGGGGACTTCGACCCCCACGTGCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCTACGTGGTTTTTGGTGc < 6:251591/138‑1 (MQ=17)
ccTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGACAGCTATATAAACGTGGTGATTGCTCCGAggcggtggcc > 8:65242/1‑138 (MQ=14)
ccTCGGTGGGTGCGCGGGGGGGGACTTCAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTACCGCCTCTACCAAATCCGCCACCTTCGCCCCGTGCGAGCAATATCAACGTGGCTTTTGGTGCGAgggggggg < 6:553378/138‑1 (MQ=18)
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GAAAGGAAGTAAAGATAATTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCACAGTCATCTTACTTTTTTTGATATCGCCTCGTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGAACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGAC > NZ_CP022686/3461086‑3461358
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
