Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F13 I0 R1 230 5035.0 9125430 98.4% 8979423 135.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP022686 4,615,712 G→T 49.4% G122C (GGT→TGT)  CIW80_RS23065 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0226864,615,7120GT49.4% 11.5 / 31.0 64G122C (GGT→TGT) CIW80_RS23065hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (15/17);  new base T (29/3);  total (44/20)
Fisher's exact test for biased strand distribution p-value = 3.11e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTAA  >  NZ_CP022686/4615574‑4615775
                                                                                                                                           |                                                                
ttCTGTGTTTTTATATATGGATTTGATTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAAAATTT‑AATATgg                                                                 >  1:723889/2‑140 (MQ=11)
  cTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTCTATTCTGG‑AATATGGtt                                                               >  4:274687/1‑139 (MQ=12)
    gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTAATTTGG‑AATATTGttaa                                                             >  1:1163175/1‑137 (MQ=11)
    gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATTATATGG‑TATATTGttaa                                                             >  1:1168635/1‑137 (MQ=11)
    gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATATTG‑AATATgtttat                                                             >  2:372642/1‑135 (MQ=11)
    gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATATGG‑AATATTGTaaa                                                             >  6:1037733/1‑139 (MQ=255)
    gtgtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGGTTTTTCTAATCTGG‑AATATTGTaac                                                             >  6:894991/1‑139 (MQ=12)
      gtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGAc                                                           <  3:26247/140‑1 (MQ=32)
      gtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATCTGG‑AAAATGGTaaa                                                             >  8:187435/1‑137 (MQ=12)
      gtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATTATATGG‑ATTATTGttat                                                             >  7:147679/1‑135 (MQ=11)
      gtTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTATTTTTTCTAAACAGG‑AATATTGTaat                                                             >  8:455386/1‑137 (MQ=255)
         tttATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTTATCTTG‑AATATGGTAAGACa                                                          >  8:909927/1‑138 (MQ=12)
               tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATTTAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTTATATTG‑AATATTGTTTGTCAAAAattat                                                  >  5:410975/1‑140 (MQ=11)
               tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAattat                                                  <  4:1120243/140‑1 (MQ=32)
               tttGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAattat                                                  <  4:1046355/140‑1 (MQ=32)
                 tGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTTATCTTG‑TATATTGTTAGAaaaaaaattt                                                  >  7:1036484/1‑134 (MQ=11)
                 tGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATAAGG‑TATATGTTTATACAAAAATTAttt                                                >  1:785774/1‑140 (MQ=11)
                   gATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTTATATGG‑GATATTGTTAGACAAAAATTAttttt                                              >  2:997476/1‑140 (MQ=11)
                       ggCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATAATG‑AAATTTGTTAGACAAAAATAATTTTTTTaa                                          >  1:490595/1‑140 (MQ=11)
                         cTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATATGG‑AAATAGGTAATAAAAAAAATATTTTTGTatgt                                        >  4:1075981/1‑137 (MQ=11)
                          ttttGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAag‑ag                                      <  2:1007659/140‑1 (MQ=32)
                             tGATCATAATAGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTCGGTGTTTTTTTATTTTTTATACACTGTCGTTTTTTTTCTACTCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAag‑aga                                     <  8:716642/138‑1 (MQ=255)
                               aTCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTCTAATCTGG‑AATATGGTTAGACAAAAATTTTTTTTGTAAG‑TGAGc                                   >  7:178347/1‑138 (MQ=255)
                                  aTAATCGTAATCCACTTGTTAAGAATTACTTGATCTATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATAAACTGTCGTTTTTTTTTTAATATGT‑AATATTTTTAAAAAAAAATTATTTTTTTAAT‑ATAGGttttt                              >  5:745189/1‑140 (MQ=11)
                                  aTAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCTTGTTTTTTGATATATGG‑TATATGGTTAGAAAAAAAATATTTTTTTTAT‑AACGCttttt                              >  5:553502/1‑140 (MQ=11)
                                  aTAATCGTAATCCACTTCTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAAATAGG‑GAAATGTTAAAAAAAAAAATAATTTTTTAAT‑AGATCctttt                              >  5:176119/1‑140 (MQ=11)
                                   tAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGGTTTTTTTTATATTG‑TATATTGTAAGAAAAAAAATATTTTTTTTTG‑AGAGGtttttt                             >  1:278786/1‑140 (MQ=11)
                                    aaTCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATCTGG‑TATATTGTATGACAAAAATTATTTTTTTTAT‑AGAGCatttt                              >  8:855945/1‑138 (MQ=11)
                                    aaTCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTAGTATATGG‑TATATGGTTATACCAAAATTATTTTTGTTAG‑AGAGCttttt                              >  8:36212/1‑138 (MQ=11)
                                      tCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATCTGG‑AATATTGTTATAAAAAAATTTTTTTTTTAAT‑AGATCttttttt                            >  7:984382/1‑138 (MQ=11)
                                         tAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTTAACTGGTATTATTGTATAAAAAAAATT‑TTTTTTTAAT‑AGAGGgttttttaatcc                       >  1:390498/1‑135 (MQ=2)
                                         tAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTAATCTTG‑GATATTGTTATAAAAAAATTATTTTTTTTAG‑AGACCTGATTTTaaaac                       >  6:178768/1‑138 (MQ=11)
                                         tAATCCACTTGTTAAGAATTACTTGATCGATATAGCATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAAACTGG‑TATATTGTAATAAAAAAAATATTTTTTTAAG‑AGAGCTTTTTTTAAAcc                       >  4:132492/1‑140 (MQ=11)
                                           aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATATTG‑GATATTGTTATAAAAAAATTATTTTTTTAAT‑ATAGCTTTTTTTaaaacaa                     >  5:312089/1‑136 (MQ=11)
                                           aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATATGG‑AATATTGTAAGACAAAAATTATTTTTTTAAT‑TGAGATTTTTTTaaaaaaa                     >  5:912393/1‑136 (MQ=11)
                                           aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATTATCTGG‑AATATTGTTAGACAAAAAATATTTTTTTTAGAAAAGGTTTTTTTAAAc                        >  8:592369/1‑138 (MQ=11)
                                           aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTTTTATATGG‑AATATTGTTTTACAAAAAATTTTTTTTTAAG‑AGGTCTTTTTTTTAAccaa                     >  5:636426/1‑138 (MQ=11)
                                           aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATATGG‑CATATGGGTAGACAAAAATTTTTTTTTTTTT‑AGAGCGTTTTTTGAACCTa                     >  6:258202/1‑140 (MQ=11)
                                           aTCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAAAATGG‑TATATTGTTAGACAAAAATTATTTTTGTAAG‑AGAGCGTTTTTTCAAccaa                     >  4:1049656/1‑138 (MQ=11)
                                            tCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCt                      <  7:659033/138‑1 (MQ=32)
                                             ccACTTGTTAAGAATTACTTGATCGATATAGTATGGTATTTAGGTGTTGTTTTATTTTTTATACAATGTCGTGGTTTTTCTAAACAGG‑CATATTGTAAGAACAAAAATATTTTTTTAAC‑AAAGAATTTTTTaaaaaaa                     >  7:325488/1‑134 (MQ=2)
                                              cACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑ACTATTTTATCACAAAAATAATTTTTGTTAG‑ATCGCTTTTTTTGAACCAaaaa                  >  6:842044/1‑140 (MQ=11)
                                               aCTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑TATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTaaaaa                 <  2:1086328/140‑1 (MQ=17)
                                               aCTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTaaaaa                 <  3:214586/140‑1 (MQ=32)
                                                cTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTTTAATATGG‑CATTTTGTTATAAAAAAATAATTTTTTTAAA‑AGTGCGTTTTTTTAAACAAAAAAt                >  6:988031/1‑140 (MQ=11)
                                                cTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATATTG‑TATATGGTAAGACAAAAATTATTTTTTTAAG‑AGAGCTTTTTTTAAACCTaaaaaa                >  2:42307/1‑139 (MQ=11)
                                                cTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATTAATTGG‑GATATGGTTAGACAAAAAGTTTTTTTTTTCT‑AGAGCTTTTTTTTAACCTAAAAAt                >  6:680613/1‑140 (MQ=11)
                                                   gTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGGTTTTTATAATCTGG‑AATAAGGGAATACAAAAATTTTTTTTTTATA‑ATAGAGTTTTTTCAACCaaaaaaaa               >  7:867094/1‑136 (MQ=11)
                                                      atgAATTAGTTGATCGATCTAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGGTTTTTTTCTAATCTGG‑AATTTGGTAAGACAATAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAATAATAAAACt          <  1:961615/138‑1 (MQ=11)
                                                      aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACt          <  6:1107023/140‑1 (MQ=32)
                                                      aaGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACt          <  2:482345/140‑1 (MQ=32)
                                                       aGAATTCCTTGATCGATATAGTATGGTGATTAGGTGTTGTTTTATTTTTTATACACTGACGTTTTTTTTCTTATCTGG‑AATATGCTAAGACATATATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAATCTa         <  2:374727/140‑1 (MQ=11)
                                                       aGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAAACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTa         <  4:176642/140‑1 (MQ=17)
                                                           ttACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATTCACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTATAAATAAAACTAAGGt     <  3:1082854/140‑1 (MQ=17)
                                                           ttACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGACGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGt     <  2:1134738/140‑1 (MQ=17)
                                                             aCTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTGTAATATGG‑AATATTGTAATACAAAAAATATTTTTGTTTA‑GGCGCTTTTTTTAAACAAAAAAAAAAAAAAAAGGTTa   >  2:400263/1‑140 (MQ=11)
                                                             aCTTGATCGATATACTATGGTTTTTAGGTGTGGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATTGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTa   <  2:904699/140‑1 (MQ=12)
                                                              cTTGATCTATATAGTTGGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGGTTTGTTTCTAATCTGG‑AATATTGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  3:490048/140‑1 (MQ=11)
                                                              cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGtt    <  8:1080293/138‑1 (MQ=32)
                                                              cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTGTAATATGG‑AATTTTGTTATACAAAAATTATTTTTTTAAT‑AGATGTTTTTTTAAACCTAAAAATAAAACTAATGTTaa  >  2:377310/1‑140 (MQ=11)
                                                              cTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATAATCTGG‑AATATTGTTAGACAAAAAATATTTTTTTTAG‑AAAGCTTTTTTTGAACCTAAAAAAAAAAAGAAGGTTaa  >  4:960265/1‑140 (MQ=11)
                                                              cTTGATCGATATAGTATGGTGTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTCATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAggga    <  7:658245/138‑3 (MQ=12)
                                                              attGATCGTTATAGTATGGGTTTTATGGGTGGTTTTATTGTTTATAGAGTGTAGTTTTTTTTCTAATCTGT‑AATATTGTAATTCAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTaa  <  1:712149/139‑1 (MQ=11)
                                                                tGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTATAATATGG‑AATATTGTTAGAAAAAAATTATTTTTGAAAT‑TGAGCATTTTTTCAACCAAAAAATAAAACAAAgggtta  >  8:166301/1‑134 (MQ=11)
                                                                tGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTGTTTTTTATTTTGTTG‑ATTATGTTTATACAAAAATTTTTTTTTTAAT‑ATAGCGTTTTTTAAACCAAAAAAAAAAAAAAATGTTaa  >  7:997810/1‑138 (MQ=2)
                                                                tGATCGATATAGTATGGTTTTTAGGTGTTGATTTATTTTTTATACACTGTCGTGTTTTTTTTTAAATGG‑TATAAGGTTATGAAAAAATATTTTTTTTTTG‑AGTGCGTTTTTTTAAACTAAAAATAAAACAAAAGGTaa  >  8:392231/1‑138 (MQ=2)
                                                                                                                                           |                                                                
ATCTGTGTTTTTATATTTGGATTGGCTTTTGATCATAATCGTAATCCACTTGTTAAGAATTACTTGATCGATATAGTATGGTTTTTAGGTGTTGTTTTATTTTTTATACACTGTCGTTTTTTTTCTAATCTGG‑AATATGGTAAGACAAAAATTATTTTTGTAAG‑AGAGCTTTTTTTCAACCTAAAAATAAAACTAAGGTTAA  >  NZ_CP022686/4615574‑4615775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A