Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F12 I0 R1
|
158 |
5737.7 |
7407908 |
98.3% |
7281973 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,503,300 |
A→C |
15.5% |
K364T (AAG→ACG) |
rlmKL → |
bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,503,300 | 0 | A | C | 15.5%
| 189.4
/ 6.0
| 115 | K364T (AAG→ACG) | rlmKL | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| Reads supporting (aligned to +/- strand): ref base A (62/30); new base C (4/16); total (66/49) |
| Fisher's exact test for biased strand distribution p-value = 1.29e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 117 total aligned reads displayed.
CGAACCGGCGCTGATTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGAAGTGGGCT > NZ_CP022686/4503163‑4503439
|
cGAACCGGCGCTGATTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAgg > 2:659400/1‑140 (MQ=255)
caCCGGCGCTGATTGCGCTGCATAGTCTGCTGGGCCGAAGCATGAAAAACCAGTTCGGTGGCTGGAATCTCGCGATGGTTAGTGCCTCGCCGGAGCTGCTAAGCTGCCTGCCGCTCCGTGCAGACCAACAGTACACgg > 7:519380/2‑138 (MQ=255)
ccGGCGCTGATTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCg > 7:100054/1‑138 (MQ=255)
cGGCGCTGATTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGATTCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGaaa > 5:749386/1‑140 (MQ=255)
gcgcTGTTTGCGCTGAATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTGGGTGGCTGTAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCGGCAGCTGCGTGCAGACAAACAGTACAAGGCTaaaaa < 6:174439/140‑1 (MQ=255)
cgcTGATTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGCATCTGTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACCAACCGTCCAAGGCGAAAAAc > 4:374911/1‑140 (MQ=255)
gcggtttGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTATCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTTCAGACAAACAGTACAAGGCGaaaaa < 8:504182/133‑1 (MQ=255)
gcTGATTGCGCTGCATAGTCTGCTGGGCCTAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACACGGCGAAAAACg < 6:165199/140‑1 (MQ=255)
gcTGATTGCGCTGAATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAAGCTCTATTTGTTTAGGGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCATACAAAAATTACAAGGCGaaaaa < 7:769449/138‑1 (MQ=255)
gcTGATTGCGCGGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTTGTCCCGCGCCGGATCTGCTAAGCTGCCTGCCGCTGCGTGCAGACAAACAGTACACGGCGaaaca < 8:149292/138‑3 (MQ=255)
gcTGAGTGCGCGGCATAGGCTGCGGGGCCGAATCCTGAAAAACCAGGTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGAGCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACTGTACAAGGCGaaaaa < 8:79944/138‑1 (MQ=255)
tGATTGCGCTGCTTAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTACGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGc < 6:406586/140‑1 (MQ=255)
gATTGCGCTGCAAAGTCTGCTGGGCCGAATCATGAAAAACCAGTGCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGcc < 4:910161/140‑1 (MQ=255)
aTTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCGCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCATCTGCGTGCAGACAAACAGTACAAGGCGAAAAACTGccc > 3:52014/1‑140 (MQ=255)
aTTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGGGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACACGGCGAAACACGGcac > 3:77693/1‑138 (MQ=255)
tggcgcTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCg < 4:941134/138‑1 (MQ=255)
gcTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTgg > 3:110651/1‑140 (MQ=255)
cTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGGGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGa < 3:659465/140‑1 (MQ=255)
cTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCCGGATTCTCTCTGTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGACTGCAGCTGCGTGCAGACAAACAGTACAAGGCGACATACGGCCCGCTg > 7:721226/1‑138 (MQ=255)
gCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGCCAAACAGTACAAGGCGAAAACCGGCCCGCTGGACt > 3:697241/1‑140 (MQ=255)
aTAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGc > 4:402843/1‑140 (MQ=255)
tAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCTGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTg > 8:81746/1‑138 (MQ=255)
tCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTAc > 3:705776/1‑140 (MQ=255)
tCTGCTGGGACGAATCAAGAAAAACCAGGTCGGTGGCTGGAATCTCTGTTTGTTTACTTCCTCGCCGGAACTGCTAAGCTGCCTGCAGCTGCGAGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGCACTGCGTAc > 5:324461/1‑140 (MQ=255)
tgctgGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTCCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAg < 2:592831/140‑1 (MQ=255)
tgcggGGCCGAATCATGAAAAACCAGTGCGGTGGCTGTAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCCGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAg < 1:783234/140‑1 (MQ=255)
gctgGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGCCTGCGTACAGa > 5:229396/1‑140 (MQ=255)
gctgGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGa > 1:90260/1‑140 (MQ=255)
tgGGCGGAAGAATGAAAACCCCGTTAGGTGGCTGGAATCTCTCTTTGTTTAGTGCATCGACGGATGTGATAAGCTGACGGCAGATGCGTGCAGAAAAACATTACAAGTCGAAACACGGCCCGCTGGACTTCGTACAGaaa < 4:491243/140‑1 (MQ=255)
tgGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGaaa > 2:673197/1‑140 (MQ=255)
tgGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTCCTAAGCTGCCTGCAGCAGCGTGCAGACAAACAGTACAAGGCTAAAAACGGCCCCCTGGACTCCGTACAGaaa > 5:680024/1‑140 (MQ=255)
tgGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGAGCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGCGTGCGTACAGaaa > 2:435811/1‑140 (MQ=255)
ggCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGcaaaa > 5:419669/1‑140 (MQ=255)
ccGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTTCATCGCCGGATCTGCTAAGCAGCCAGCAGCTGCGTGCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACAGCGTACAGAAAAAca > 3:250913/1‑139 (MQ=255)
ccGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAATCAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAACCt > 2:840949/1‑140 (MQ=255)
ccGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGaaaaa > 8:725485/1‑138 (MQ=255)
aaTCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTAcc > 1:746433/1‑140 (MQ=255)
aaTCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGAGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTAcc > 6:824618/1‑140 (MQ=255)
aaTCATGAAAAACCAGTTCGGTGGATGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTTCAAGGCGAAAAACGGCCCGCTGGACTGCGAACAGAAAAACTAcc > 2:781201/1‑140 (MQ=255)
tCATGAAAAACCAGATCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCAGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAACCCTAcc > 8:283991/1‑138 (MQ=255)
cATTAAAAACCAGTTCGGTGGCTGGAATCGCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTAAAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATg < 2:823393/140‑1 (MQ=255)
cATGAAAAACCAGTTGGGGGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATg < 6:558798/140‑1 (MQ=255)
aattaaaaaCCAGTTCGGTGGCTGTAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATg < 6:474253/136‑1 (MQ=255)
aaTGAAAAACCAGTTCGGTGGCTGGAATATCTGTTTGTTTTGTGCCCCGCCGTAGCTGCTAAGCTGCCTGCTGCGGCGTGCAGAAAAACAGTACAAGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCa < 7:148764/137‑1 (MQ=255)
aaaaaCCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGTATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGc > 6:852989/1‑140 (MQ=255)
aaaaaCCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGc > 3:462827/1‑140 (MQ=255)
aaaaaCCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGAGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCAGGACTGCGTACAGAAAAACTACCATGTTGc > 5:617013/1‑140 (MQ=255)
atcctgTTGGGTGGGTGTAATCTGTATTTGTTTATGGCCGCGCCGGATCTGCTACGGGGCGGGCTGGTGCGTGCAGACAAACAGTACACGGCTAAACACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGa < 1:9644/135‑1 (MQ=255)
aaCCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCGGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGa < 1:32213/140‑1 (MQ=255)
cctgTTCGGTGGCGGTAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGAAAAACAGTACACGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGaaa < 5:170894/137‑1 (MQ=255)
ccAGTTCGGGGGCTGGAAGCTCTCTTTGTTTAGTGCCGCGCCGGAGCTGCTAAGCTGCCGGCCGCTGCGGGCAGACAACCCTTCCAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGaaa < 6:139284/140‑1 (MQ=255)
gTTCGGTGGCGGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCGGCGTCCAGAAAAACTTTACACGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGca < 3:777397/140‑1 (MQ=255)
gTTCGGTGGCGGGAATCTCTCTTTGGTTAGTGCCTCGCCGGATCTGCTACGCTGCCTGCCGCTGCTTGCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGca < 1:458155/140‑1 (MQ=255)
gcGGTGGATGTAATCTCTCTTTGTTTAGTGCCTCCCCGGATCTGATAAGCTGCCTGCAGCTGCGTGCAGACAAACCTTACACGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGcaca < 1:223771/139‑1 (MQ=255)
gggATTCTCTATTTGGTTAGTGCCTCGCCGTATCTGATAAGGTGCCGGCTGCTGGGTGCATACAATCATTACACGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAg < 4:346558/139‑1 (MQ=255)
ggAATCTCTATTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCTCTGGACTGAGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGc > 5:54807/1‑140 (MQ=255)
taaTCTCTTTTTTTTTCGTGCCTCGCGGTATCTGATATGTGGCTTGCTGGTGCGTGAATAAAAAAATTAAATGGCTAAAAACGGCCCGCTGGACTGCGTACATAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCa < 4:288106/139‑1 (MQ=255)
taaTCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCa < 2:563199/139‑1 (MQ=255)
cattctatcTTGTTTTAGTGCATCGCCGGATCTGCTATGCTGCTTGCAGTTGCTTGCAGACAAACCGTAAATGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAATACTACCATGTTGCCGAAAGCACACCAGACAGCa < 2:571489/137‑1 (MQ=255)
actctctgTTTGTTTTGTGCCTGGCGGGAGCTGCTACGCTGCCTGCTGCTGGGTGCAGACAAAAAGTACACGGCGAAACACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCaa < 5:653199/138‑1 (MQ=255)
aaTCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCCGCTGCGTGCAGACAAACAGTCCAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCAGGTTGCCGAAAGCACACCAGACCGc > 7:407513/1‑138 (MQ=255)
atgtatctTTGTTTTGTGCCTCGCCGGATCTGCTAAGCTGCCTTCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCaaa < 2:890099/135‑1 (MQ=255)
tctTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAGAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGt > 4:98090/1‑140 (MQ=255)
tGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGCCAGCAAACCGGTAATg > 4:402401/1‑140 (MQ=255)
tagCCGCGCCGGATCTGCAAATCTGCCGGCAGCTGCGTCAAGACAAAATGAAAACTGCGAAACACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAACCACACCAGACAGCAAACCGGTAATGGCAg < 7:862311/136‑1 (MQ=255)
gCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCg > 7:807433/1‑138 (MQ=255)
cTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGa < 8:724194/138‑1 (MQ=255)
cGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACCCCAGACAGCAAACCGGTAATGGCAGCGGAAGAc > 1:429715/1‑140 (MQ=255)
cGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGAc > 6:531062/1‑140 (MQ=255)
cGCCGGATCTGCTAACCTGCCGGCCGCTGCGTGCACACAAACCTTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGAc < 4:137516/140‑1 (MQ=255)
tGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCCGCGGAAGACTACGCCAAc > 4:654363/1‑140 (MQ=255)
cacgCTGCCTGCAGCTGCGTCCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCgg < 6:210123/137‑2 (MQ=255)
aaaGCTGCCTGCAGCTGCGTGCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAAcc < 7:75032/137‑1 (MQ=255)
aacctgcctgcCGCTGCGGGCACACAAACAGAACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTc < 3:797442/137‑1 (MQ=255)
aaGCTTCCTGCAGCTGCGTGCTTACAAACTGAAAAAGGCTAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACTCCAACCGTc < 4:159014/140‑1 (MQ=255)
aaGCTGCCTGCAGCTGCGTGCAGAAAAACAGTACAAGGCTAAACACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTc < 6:153931/140‑1 (MQ=255)
gcctgcAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCACCCGTCTGc > 8:294052/1‑138 (MQ=255)
cctgcAGCTGCGTGCAGACAAACAGTACACGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGca < 3:406378/86‑1 (MQ=255)
cctgcAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGca > 4:406378/1‑86 (MQ=255)
cctgcAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTa > 3:378675/1‑140 (MQ=255)
cctgcAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTa > 3:209057/1‑140 (MQ=255)
ctgcAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGATAAACTACAATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGt > 7:125583/1‑138 (MQ=255)
tgcAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATCGCAGCGGAAGACTACGCCAACCGTCTGCGTAAg > 1:602565/1‑140 (MQ=255)
cgcggCGTGCATACAAACAGCACAAGCCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGa < 8:786859/134‑1 (MQ=255)
aGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGACAACCGTCTGCCTAAGAAc > 4:262419/1‑140 (MQ=255)
cGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCaa > 6:714951/1‑140 (MQ=255)
cGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTAAGCCAACCGTCTGCGTAAGAAACTCaa > 3:70083/1‑140 (MQ=255)
cGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACAACAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCaa > 4:855042/1‑140 (MQ=255)
cGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTAGCCGAAAGCACACAAGACAGCAAACCGGTAATGGCAGAGGAAGACTACTCAAACCGACTGCGTAAGGACCTCaa > 1:513169/1‑140 (MQ=255)
tGCAGACAAACAGTACAAGGCGAAAACCGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGTTAATGGCAGCGGAAGACTACGCCAACAGTCTGCGTAAGAACCTAaaaa > 5:826041/1‑140 (MQ=255)
tGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCaaaa > 1:287368/1‑140 (MQ=255)
tGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCGGCGTAAGATCCTCaaaa > 3:935849/1‑140 (MQ=255)
cAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCaaaa > 8:45125/1‑138 (MQ=255)
cAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGaa > 6:254593/1‑140 (MQ=255)
cAGAACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGaa < 5:586185/140‑1 (MQ=255)
tACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGAAGTg > 4:66437/1‑140 (MQ=255)
cAAGGCGATAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCCACCGTCTGCGTAAGAACCTCAAAAAATTCCAGAAGTggg > 3:489231/1‑140 (MQ=255)
cAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGAAGTggg < 6:670469/140‑1 (MQ=255)
aGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGAAGTGGGCt > 4:797543/1‑140 (MQ=255)
aGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGAAGTGGGCt > 3:339762/1‑140 (MQ=255)
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CGAACCGGCGCTGATTGCGCTGCATAGTCTGCTGGGCCGAATCATGAAAAACCAGTTCGGTGGCTGGAATCTCTCTTTGTTTAGTGCCTCGCCGGATCTGCTAAGCTGCCTGCAGCTGCGTGCAGACAAACAGTACAAGGCGAAAAACGGCCCGCTGGACTGCGTACAGAAAAACTACCATGTTGCCGAAAGCACACCAGACAGCAAACCGGTAATGGCAGCGGAAGACTACGCCAACCGTCTGCGTAAGAACCTCAAAAAATTCGAGAAGTGGGCT > NZ_CP022686/4503163‑4503439
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
