Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F2 I0 R1
|
252 |
7301.5 |
9636800 |
98.5% |
9492248 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,736,586 |
A→C |
15.3% |
Y183S (TAC→TCC) ‡ |
rffA → |
dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,736,586 | 0 | A | C | 15.3%
| 500.2
/ 30.7
| 248 | Y183S (TAC→TCC) ‡ | rffA | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| Reads supporting (aligned to +/- strand): ref base A (175/28); new base C (2/42); total (177/71) |
| Fisher's exact test for biased strand distribution p-value = 3.62e-26 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 250 total aligned reads displayed.
ACCATTATGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGATA > NZ_CP022686/2736447‑2736723
|
tGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGTCTGCTTTAGCTTCCATGAAACCAAAAACTACAcggcg > 7:828506/1‑140 (MQ=255)
ggCGTTGGCGAAGAAGAATAATCTGTTTGTGGTGTATGTTGCCGCTCTGGGCGTGATGCCCAATTAAAATGGGCGGGGGCGGGTAACCATTT‑TT‑AATTTTGGCTGATTTAGCTACCTTCAAACCAAAAACTACAcggcgg < 8:678471/140‑1 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 6:101981/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 5:294192/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 8:238245/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 7:545541/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCAACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTTCTTTAGCTTCCATGAAACCAAAAACTACACAGCtggtgg > 6:270406/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCAACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGAGTTAGCTTCCATGAACCCAAAGACTACACGGCGggttg > 7:877432/1‑138 (MQ=255)
ggCGAAGAATCATAATGTGTTTGTGGTGGAAGCTGCCGCTCAGGGACTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCTTTG‑GT‑CATATTGGATGCTTTAGCTACCATGAAAACAAAAACTACCCGGGGGgtggtg > 5:509770/1‑140 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 1:166069/1‑138 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGgtggtg > 4:1201109/1‑140 (MQ=255)
cGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAACAACTACACGGCGGgtggtg > 1:504779/1‑138 (MQ=255)
gaagCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGATCCCAAAAACTACACGGCGGGTGGTGAAggcg > 7:705201/1‑140 (MQ=255)
agCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAggcggc > 6:602238/1‑140 (MQ=255)
gCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACATGGCGGGTGGTGAAggcgg > 2:1007198/1‑138 (MQ=255)
aTAATTTTTTTGGGTTGTCAGATGCTGCTAAGGGTTTGATGACCACTAACATCGGGCGTGCGCTGGGAACCTTTG‑GA‑CATATGGGCTGCTTTTCATTCAATCAAACAAAAAACACCACGGCGGGTGGTGAAGGCGGcgcg < 4:523972/140‑1 (MQ=255)
ttCTTTTTGGGGTGCTAGTTGCCGCTCCGGGGGTTATGTCCATTTACACGGGGCGTGCGCGGGCAACCTTGG‑GT‑CATTTTGGCTGCTTTCGATCCCATGAAACCAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGa < 2:238017/137‑1 (MQ=255)
ttCTGTTTGGGGTGGATTTGGCCGCTCGGGGCGTGATGTCAAATTACAACGGGGGGGGGTGGTAAACCTTTG‑GT‑AATATTGGCTTCTTTAGCTTCAATTAAACAAAAAACACCACGGCGGGTGGTGAAGGCGGCGCGACg < 8:623981/139‑1 (MQ=255)
aTCTGTTTGGGGGGCCAGATGCCGCGCCGGGCGTGATGCCCACTTACAACGGGGGTGCGCTGGGAACAATTG‑GT‑CATATTGGCTGCTTTAGCTGCCTCTAAACCAAAAACAACACGGCGGGTGGTGAAGGCGGCGCGACg < 4:181904/140‑1 (MQ=255)
tttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAt > 6:348397/1‑140 (MQ=255)
tttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAt > 5:130726/1‑140 (MQ=255)
ttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAtt > 8:1060621/1‑140 (MQ=255)
ttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAtt > 6:202058/1‑140 (MQ=255)
ttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAtt > 8:36850/1‑140 (MQ=255)
gggtggtgTAAGATCCCGCTACGGGCGTGAGGCCCACTTAAAATGGGCGTGCGC‑GGGTAACATTGTGT‑AATTTTGGGTGCTTTAGCTGACATAAACCCAAAAACCCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGAtt < 6:749961/138‑1 (MQ=255)
tgtgGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAt > 1:391459/1‑138 (MQ=255)
gcacgaggCCGCTCAGGGCGTGTGGTCCACTTACAACGGGCGTGCGCGGGGAACCATTG‑GG‑AATATTGGCTGCTTTAGCTTCCATGAACCCAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATa < 4:1042361/133‑1 (MQ=255)
aaGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAGCCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATaaa > 5:917516/1‑140 (MQ=255)
tGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGt > 6:300128/1‑140 (MQ=255)
ccGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGCCGCTGATTAACGATAAAGCGt > 2:1118760/1‑138 (MQ=255)
cGCTCAGTGCGTGATGTCAACTTACAAAGGGAGTGAGCTGGGAACCATTG‑TT‑AATATTGTCTGATTTAGCTTCCATGAACCCAAAAACTAAACGTCGGTTGGTGAAGGCTGCTCGACGCTGATTAACGATAAAGCGttta > 6:1126887/1‑138 (MQ=255)
gCTCTGGGGGTGATGTCCAATTACAATGGGCGGGCGCTGGGAACAATTG‑GT‑CATATTGGCTGCTTTAGCTACCATCAAACCAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGAt < 4:959143/140‑1 (MQ=255)
cTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGa > 2:309306/1‑138 (MQ=255)
cTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATc > 3:647758/1‑140 (MQ=255)
cAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATc > 1:629797/1‑138 (MQ=255)
cgggCGGGAGGCCCACTAACAACGGGCGTGCGCTGCGAACC‑TTG‑GTGCATATGGGCTGCTTTCGCCTCCATTCACCCAAAAACTCCACGGCGGGGGGTGAAGGAGGCGCGACGCTGATTTACGATAAAGCGTTGATCGaa < 4:678069/139‑1 (MQ=255)
ggCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGCAAACAAAAACTACACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTACCGATAAATCGTTGATAGAACg > 8:554683/1‑140 (MQ=255)
gtttaTGTCACCTTACCATGGGCTGGGGTTGGTAACCTTTG‑GG‑AATTTTGGCTGCTTATCCGTCCAGCAACCCAAAAACCACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAg < 8:1148039/136‑1 (MQ=255)
ggggATGTCCACTAACAACGGGCGGCGGCGGGGACCCATTG‑GA‑CATATTGGCTTCTTTAGCTCCCATCAACCCAAAACCAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAg < 6:1052761/137‑1 (MQ=255)
ggTGAGGTCCACTTACAACGGGCGGGCGCTGGTACCCATGG‑GT‑AATATTGGCTGCTTTAGCTTCCATCAAACAAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACg < 2:676107/137‑1 (MQ=255)
gATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGAGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCg > 4:994604/1‑140 (MQ=255)
ccACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGCCGCTGATTAACGATAAAGGGTTGATCGAACGAGCCGCGatc > 7:150908/1‑140 (MQ=255)
ccACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGatc > 4:427479/1‑140 (MQ=255)
cACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGatca > 3:777854/1‑140 (MQ=255)
aCTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGatc > 1:196699/1‑138 (MQ=255)
cTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGCCGCTGATTAACGATAAAGCGTTGATCGCACGAGCCGAGatca > 1:1200680/1‑138 (MQ=255)
ttACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATcc > 7:969538/1‑140 (MQ=255)
ttACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACAACACTGCGGGTGGTGAAGGAGGCGCGACGCAAATTAACGATAAAGCATTGCTAGAACGAGCCCAGATCATcc > 6:123520/1‑140 (MQ=255)
aCAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACCCGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATcc > 2:908179/1‑138 (MQ=255)
aCAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATAGAACGAGCCGAGATCATCCgg > 3:878999/1‑139 (MQ=255)
aaGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGaa > 8:1000581/1‑140 (MQ=255)
gggCGTGCGCTGTTAACCTTTG‑TT‑AATATTGGCTGTTTTAGCTTCCTTTAAACAAAAAACAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGaaaa < 4:126909/140‑1 (MQ=255)
cGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAgg > 4:226115/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACATGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAgg > 2:1131741/1‑138 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTTCAGGCGGCGCGACGCTGCTTAACGATAATTCGTTGATCTAACGAGCCGAGATCATCCGTGAAAAAGGca > 7:492225/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGCTCATCCGTGAAAAAGGca > 3:473881/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 3:1177728/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 3:255461/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 4:610105/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATCAAACCAAAAACTACACGGCGGGTGGTGACGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGCGCCGAGATCATACTTGAAAAAGGca > 7:80080/1‑140 (MQ=255)
tGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCATCCATGAAACCAATAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 3:1101725/1‑140 (MQ=255)
ggggcTGGGAACATTTG‑GT‑AATTTTGGTTGCTTTCGCTACAATTAAACCAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca < 6:724353/137‑1 (MQ=255)
gggAACCATTT‑GT‑AATTTGGGCTGCTTACGCTTCCATCAAACCAAAACCAACACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACaaa < 2:329183/138‑1 (MQ=255)
ggAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCg > 4:761419/1‑140 (MQ=255)
gAACAATTG‑GT‑CATATAGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGACCCGAGATCATACGTGAAAAAGGCACAAAcc > 2:70336/1‑138 (MQ=255)
aacatttG‑GT‑AATTTGGGCTGCTTTATCTTCCTTGAAACCAAAACAACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCa < 8:83881/135‑1 (MQ=255)
aaCCATTG‑GT‑AATATGCGCTGCTTTCGCTTCCATCAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCa < 4:1022905/140‑1 (MQ=255)
tG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGCCGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAACCCGCAGCCAGt > 4:909354/1‑140 (MQ=255)
tG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGCTCATCCGTGAAAAAGGCACAAACCGCAGCCAGt > 5:847476/1‑140 (MQ=255)
tG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAATAGGCACAAACAGCAGCCAgg > 8:157539/1‑139 (MQ=255)
g‑gT‑AATATGGGCTGCTTTTGCTTCAATCACACCAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGGTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAg < 1:954256/138‑1 (MQ=255)
gT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCGGATTAACGATAAAGCGTTGATCGAACGCGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGttc > 3:377285/1‑140 (MQ=255)
atTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACAcggcgg < 8:318234/43‑1 (MQ=255)
atTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCg > 5:535776/1‑140 (MQ=255)
gtttatttAGCTACCATCAAACAAAAAACACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGt < 3:589415/135‑1 (MQ=255)
gctgctTTTCCCTCCAATAAACAAAAACCAACACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGt < 5:769312/140‑1 (MQ=255)
gctgctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGAGAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGt > 7:1047714/1‑140 (MQ=255)
gctgctTTAGCACCCATAAAACCAAAACCACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGt < 3:1201109/140‑1 (MQ=255)
gtgatttAGATTCCATGAAACCAAAAACACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTgg < 1:657089/134‑1 (MQ=255)
ctgctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGTGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTc > 3:193909/1‑140 (MQ=255)
tgctTTAGCTTCAATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGACGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGt < 4:860370/102‑1 (MQ=255)
ctTTAGCTTCCATGAAACCAAAAACTACCCGGCGGGGGGTGAATGCGGCGCGCCGCTGATTAACGAGAAAGCGTTGATCGCACGAGCCGAGAGCCTCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTGACGTGGGCAgg > 7:283982/1‑140 (MQ=255)
ctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGATCGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTATTCCGTGGTCa > 2:175086/1‑138 (MQ=255)
ctTTAGCTTCCATGAAAACAAAAACTACACGGCGGGTGGTGAAGGAGGCGCGACTCTGATTAACGATAAAGCGTTGATCTAACGAGCCGAGATAATACGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCa > 2:505797/1‑138 (MQ=255)
ttctcTTCCATGAACACAAAACCTCCAAGGCGGGTTGTGAAGGCGGCGCGACGCTGATTAACGATAACGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc < 6:517640/136‑1 (MQ=255)
ttAGCTTCCATGAAACCAAAAACTACACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGACGAGATCATCCGTGAAAAAGGCACAACCCGCAGCCAGTTCGTCCGTGGTCAgg > 2:1219110/1‑138 (MQ=255)
ttAGCTTCCATCAAACCAAAAACACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc < 7:399534/140‑1 (MQ=255)
tacctaccATCAAACCAAAAACTCCACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCg < 5:655167/134‑1 (MQ=255)
tAGCTTCCTAGAAACCAAAGAAACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCg < 5:1075703/140‑1 (MQ=255)
tAGCTTCCATGAAACCAAAAACTACATGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGt < 1:1131741/138‑1 (MQ=255)
tAGCTCCCATCAAACAAAAACAAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGt < 2:391459/138‑1 (MQ=255)
aGCTTCCATGCAACCAAAAACACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc < 2:820369/138‑1 (MQ=255)
aGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc > 2:752289/1‑138 (MQ=255)
accATCAAACAAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATaaa < 5:202058/139‑1 (MQ=255)
cATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 3:798631/1‑140 (MQ=255)
cATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 3:865992/1‑140 (MQ=255)
aCCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTg > 4:273240/1‑140 (MQ=255)
aacaaCTTCACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATAAACCTgg < 1:887430/135‑1 (MQ=255)
aaaaCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAAAGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAACGGCACAACCCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcgg > 7:1121381/1‑139 (MQ=255)
cTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGata < 6:922937/140‑1 (MQ=255)
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ACCATTATGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTG‑GT‑CATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGATA > NZ_CP022686/2736447‑2736723
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
