Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F13 I0 R1
|
235 |
6960.4 |
9135780 |
98.4% |
8989607 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,736,586 |
A→C |
13.1% |
Y183S (TAC→TCC) ‡ |
rffA → |
dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,736,586 | 0 | A | C | 13.1%
| 514.8
/ 17.2
| 255 | Y183S (TAC→TCC) ‡ | rffA | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| Reads supporting (aligned to +/- strand): ref base A (180/35); new base C (2/37); total (182/73) |
| Fisher's exact test for biased strand distribution p-value = 5.16e-22 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 258 total aligned reads displayed.
ACCATTATGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGATA > NZ_CP022686/2736447‑2736723
|
acCATTATGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTa > 2:402291/1‑140 (MQ=255)
acCATTATGGCGTAGGCGAAGAAGCATAATCTGTTTGAGGTGGAAGATGCCGCTCAGGGCGTGATGACCCCTTACAAAGGGCGGTCGCTGGGCACCATTGGTCATATTTGCTGATTTAGCTTCCATGCAACCAAAAACTa > 8:132368/1‑140 (MQ=255)
tGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACAcggcg > 8:752824/1‑140 (MQ=255)
tGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCAATGGTCATATTGGCTGCTTTAGCTTCCATGAACACAAAAACTACAcggcg > 2:1154895/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGCTGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCGTCCCTGAAACCAAAAACTACACGGCgggggg > 1:1088181/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGACCCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 5:679440/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACCCGGCGggtgg > 6:941975/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 7:869340/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 6:564560/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 6:250792/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 5:119225/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 2:945915/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 2:842356/1‑140 (MQ=255)
ttGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAAACATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 1:127370/1‑140 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGATGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGgtggtg > 8:909256/1‑140 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 4:987902/1‑138 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 3:969283/1‑138 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGggtgg > 3:674321/1‑138 (MQ=255)
ggCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTAAGCTGACATGAAACCAAAAACTACACGGCgggggg > 4:411707/1‑138 (MQ=255)
cGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGgtggtg > 4:1083376/1‑138 (MQ=255)
agCATAATATGTTTGTGGTGGAAGATGCCGCTCAGGGCGTCATGTCCACTTACAAAGGGCGTGCGCTGGCAACCATTGGTAATATTGGCTCCTATAGCTTCCATGAAACCAATAACTACGCGGAGGCTGGTGCAggcg > 4:226327/1‑138 (MQ=255)
aTCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACg > 1:662149/1‑140 (MQ=255)
tGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTg > 5:630511/1‑140 (MQ=255)
tttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAt > 8:549706/1‑140 (MQ=255)
ttGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCGTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAtt > 2:768995/1‑140 (MQ=255)
gtggAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGa > 2:641208/1‑140 (MQ=255)
aaGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATa > 3:424876/1‑138 (MQ=255)
tGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGt > 8:170164/1‑140 (MQ=255)
tgggCGTTTTGTCCAATTACAATGGGCGTGCGGGGGTAACCATTGGTAATTTTGGCTGCTTTCGCCTCCATCAAACAAAAAAAAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTCGATCg < 4:712400/137‑1 (MQ=255)
cgggCGTTATGTCCAATAACAACGGGCGTGCGCGGGGACCAATTGTTCATATTGGCTTCTTTAGCTGCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCg < 3:795606/137‑1 (MQ=255)
ggCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACg > 5:412142/1‑140 (MQ=255)
gATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGGCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGCCGCTGATTAACGATAAAGCGTTGATCGCACGAGccc > 2:536988/1‑139 (MQ=255)
caaCTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTATAGCTTCCATGAAACCAAAAACTACCCGGCGGGTGGTGAAGTCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGCACGAGCCgagcac > 5:231510/3‑137 (MQ=255)
aaGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGCCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGaa > 6:662567/1‑140 (MQ=255)
gggggggcgcTGGTACCTATTGTTCATTTTGCGTGCTTTAGCTTCCATTAAACCAAAAAATCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGaaaa < 5:1065152/134‑1 (MQ=255)
ggCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGCCGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGCGATCATCCGTGataaa > 5:181017/1‑140 (MQ=255)
ggCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCTTGaaaaa > 2:193930/1‑140 (MQ=255)
ggCGTGCGATGGGAACCATTGGTCATATTGGCTGCTTTATATACCATCAAACCAAAAACTACCCCGCGTGTGGTGAAGGCTGCGCGCCGCTAATTAACGATATAGCGTTGATCGAACGCGCCGACTTCATCAGTGaaaca > 7:303332/1‑138 (MQ=255)
cGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAgg > 8:30558/1‑140 (MQ=255)
tGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAgg > 4:460343/1‑138 (MQ=255)
tGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGcc > 2:899794/1‑139 (MQ=255)
tGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 8:417069/1‑140 (MQ=255)
tGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 6:860815/1‑140 (MQ=255)
gcgcGGGTAACCATTGGTAATTTTGGCTGATTTAGCTTCCATCAACACAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGcac < 6:988566/140‑1 (MQ=255)
cgcTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 4:309481/1‑138 (MQ=255)
cgcTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGca > 4:904272/1‑138 (MQ=255)
cgcTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCAAGAACCCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGAATAACGATAAAGCGTTGATCGAACGAGCGGACATACTCCGTGAAAAAGTcaca > 1:726299/1‑140 (MQ=255)
cgcTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTACATGAAACCAAAAACTACACGGCGGGGGGTGAAGGCGGCGCGCCGCAGATTAACGATACAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGcc > 4:648532/1‑137 (MQ=255)
cgcTGGGAACCATTGGTCATATTGGCTGCTGTAGCTTCCATGAAACCAAACACTACCCGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGCTAAAGCGTTGCTCGAACGAGACGAGATCATCCGTGAAACAggaa > 4:663169/1‑136 (MQ=255)
gggAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAAcc > 1:82525/1‑140 (MQ=255)
acccATTGGTCATGTTGGCTGGTTTAGCTTCCATGAAACAAAAACATCCACGGCGGGTGGTGAAGGCGGCGCGACGCGGATTAACGATTAAGCGTTGATCGAACGAGCCGAGAGCATCCGTGAAAACGGCACAAACCGCa < 7:653887/138‑1 (MQ=255)
aaCAATTGGTCATATTGGCTGCTTTAGCTCCCATAAAACAAAAAACAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCa < 6:836794/140‑1 (MQ=255)
caaTTGGACTTATTGGATGATTTAGCTTCCATGAACCAAAAAACAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGc < 6:1092996/138‑1 (MQ=255)
atatgtgTCATTTTGGCTGCTTACGATACAATCAAACCAAAAAGTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGc < 5:447650/134‑1 (MQ=255)
aTTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACTAGCCGAGATCATACGTGAAAAAGGCACAAACCGCAGCCa > 8:450786/1‑140 (MQ=255)
ttGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGcc > 4:546530/1‑138 (MQ=255)
cATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTTGTCAAGGCGGCGCGACGCTGATTAACGAAAAAGCGTTGATCGAAAGAGCCGAGATCATCCGAGAAAAAGGCACAAACCGCAGCCAGttc > 4:1005986/1‑138 (MQ=255)
cATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGttc > 4:965092/1‑138 (MQ=255)
ttttGGCTGCTTTCGCTACCATCAAACAAAAACCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTcc < 8:732212/138‑1 (MQ=255)
tttggggtgctTTAGCTTCCATGAAACCAAACACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTcc < 2:1081287/133‑1 (MQ=255)
tGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCg > 3:6155/1‑138 (MQ=255)
ggCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTTATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCAACCGTGAAAAAGGCACAAACCGCAGCCATGTCTTCCTTgg > 5:90276/1‑140 (MQ=255)
gctgctTTAGATCACAACAAACCAAAAACAACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGt < 5:267522/140‑1 (MQ=255)
gtttttttGCTTCAATTAAACAAAAAATTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTc < 7:549706/136‑1 (MQ=255)
ctgctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGCTCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTc > 1:483796/1‑140 (MQ=255)
ctgctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTc > 6:966017/1‑140 (MQ=255)
tgctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGCACGAGCCGAGATCATCCGTGAATAAGGCACAAACCGCAGCCAGTTCTTCCGGGGTcg > 6:157142/1‑139 (MQ=255)
ctTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGATCGCGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCa > 4:349933/1‑138 (MQ=255)
ttAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCTCGACGCTGATTAAGGATAAAGCGTTGAACGAACGATCCGAGATCATCCGTGAAACAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAgg > 3:260420/1‑138 (MQ=255)
ttAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc > 1:378603/1‑140 (MQ=255)
ttAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGGGGTCAGGTc > 8:197978/1‑140 (MQ=255)
ttAGCTTCCATGAAAAAAAAAAATACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc < 8:662668/140‑1 (MQ=255)
ttAGCTTCCATCAAACCAAAAACTCCCCGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc < 2:307443/140‑1 (MQ=255)
ttAGCTTCAATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAAAGCGCCGAGATCATCCTTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTc > 8:283962/1‑140 (MQ=255)
tcgattCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCg < 6:352464/136‑1 (MQ=255)
acccTTCCATCAAACAAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGt < 3:53798/135‑1 (MQ=255)
tgCTACCATTAAACAAAAAACACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGa < 1:314540/139‑1 (MQ=255)
cgCTTCCAAGAACCAAAAATCTACTCGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTTATCGAACGAGCCGAGTTAATCCGTGAAAAAGGCACAAACCGCATCCAGTTCTTCCGTGGTCAGGTc < 4:805751/137‑1 (MQ=255)
cgCTGCCATGAACCCAACACCCACACGGCGGGTGGGGAAGGCGGCGCGACGCTGATTAACGATAAAGCGCTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGa < 6:745/139‑1 (MQ=255)
tCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGCGCCGAGTTCATCCGTGAAAAAGGCACAAACAGCAGCCAGTTCTTCCTTGGTCAGGTCGATaaa > 5:374256/1‑140 (MQ=255)
ccgattaaaCCAAAAACTACACGGCGGGGGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATaaa < 7:183880/134‑1 (MQ=255)
caattcaaCCAAAAACTCCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATaa < 4:110891/132‑1 (MQ=255)
caacgacaCCAAAACCACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAat < 7:1083222/133‑1 (MQ=255)
cATGAAACCAACAACTACACGGCGGGTGGTGAAGGCGTCGCGACGCTGATTAACTATAAAGCGTTGCTCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAActa > 1:269117/1‑140 (MQ=255)
cATGAAACCAAAACCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGCTCGAACGCGCCGAGATCATCCGTGAAAAAGGCACACACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 8:347915/1‑140 (MQ=255)
cATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGCGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 7:164678/1‑140 (MQ=255)
cATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 1:622839/1‑140 (MQ=255)
cATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 5:317023/1‑140 (MQ=255)
cATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 2:101442/1‑140 (MQ=255)
tGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 4:261531/1‑138 (MQ=255)
tGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 3:498791/1‑138 (MQ=255)
tGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAata > 3:13932/1‑138 (MQ=255)
aaaacCTACACGGCTGGGGGTGAAGGCGGCGCGACGCTGATTAACTATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcg < 1:873144/140‑1 (MQ=255)
aaaacCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTgg < 4:127309/138‑1 (MQ=255)
aaaacCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcg < 5:802324/140‑1 (MQ=255)
aaaaaCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcg < 6:406909/140‑1 (MQ=255)
aaaaaCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcg < 5:979478/140‑1 (MQ=255)
aaaaaCTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcg < 2:158834/140‑1 (MQ=255)
aaaaaCACCACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTgg < 3:193802/138‑1 (MQ=255)
aaaaATACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGgcgc < 7:755120/140‑1 (MQ=255)
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ACCATTATGGCGTTGGCGAAGAAGCATAATCTGTTTGTGGTGGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCGCTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGTGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTGATCGAACGAGCCGAGATCATCCGTGAAAAAGGCACAAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGATA > NZ_CP022686/2736447‑2736723
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
