Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F35 I0 R1
|
157 |
6985.9 |
8006972 |
98.3% |
7870853 |
134.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,331,897 |
G→T |
16.6% |
S303* (TCG→TAG) |
ybhR ← |
ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,331,897 | 0 | G | T | 16.6%
| 272.9
/ 5.4
| 139 | S303* (TCG→TAG) | ybhR | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (77/27); new base T (2/28); total (79/60) |
| Fisher's exact test for biased strand distribution p-value = 1.65e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 141 total aligned reads displayed.
GCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGT > NZ_CP022686/4331766‑4332035
|
gCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTaa > 8:410491/1‑140 (MQ=255)
cacaAACTATTCCACACAATATCCAGCCTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTaa > 4:408491/1‑138 (MQ=255)
acaAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAAc < 5:190920/138‑1 (MQ=255)
caAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAAc > 1:801119/1‑137 (MQ=255)
caAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGGTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAAc < 2:801119/137‑1 (MQ=255)
aaaCTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGTTAATGTCAGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGACACATTGGCATGTTTTACACCGGCGAACCGAAACCg > 4:767063/1‑138 (MQ=255)
aCTATTCCCCACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCAACCGGCGAAACGTAACCGGa > 3:225821/1‑138 (MQ=255)
cacacaATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGCCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCggagaggaga > 5:809308/1‑138 (MQ=255)
acacaATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATg > 7:408712/1‑140 (MQ=255)
caATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATgg > 1:168496/1‑138 (MQ=255)
caATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATgg > 6:502128/1‑138 (MQ=255)
atatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCg < 2:1025710/138‑1 (MQ=255)
tatCCAGACTCGCATCCTTCAACTAAATCTGCTTGGTAATGTCCGTACAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCgg < 5:877079/138‑1 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCgg > 6:691765/1‑138 (MQ=255)
aatCCAGACTCGCTTCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCgg < 6:143759/137‑1 (MQ=255)
tCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGc > 4:639087/1‑138 (MQ=255)
aGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGGTAATCAACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAACCGTAACAGGAACTGAGAAGGGCGGGcagc > 2:985136/1‑136 (MQ=255)
gACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGTAGAATGGCGGGCATCATa > 7:452867/1‑140 (MQ=255)
cTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATaaa > 7:772844/1‑140 (MQ=255)
tCGCATCCTTCAAATAAATCTGCTTGGTAATGTACGTAAAGTGTCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATaa > 4:127615/1‑138 (MQ=255)
cATCCTTCAAATACATCTGCTTTGTAATGTGAGTAAAGTGGAGAATAGGGTAAATCCACGTCAGATTTTGAAGCCACAGAGCCAAGTTTTCCACCGGCGAAACGTATCCTCAAATGAGAATGGAGGGCATCATAAAGACa > 7:429908/1‑140 (MQ=255)
cATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGTCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTACCCGGAAAGGAGAATGGCGTGCATCATAAAGa > 2:350769/1‑138 (MQ=255)
cATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCg < 3:705945/110‑1 (MQ=255)
cATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGa > 1:651404/1‑138 (MQ=255)
cATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACAGGCGAAACGTAACCg > 4:705945/1‑110 (MQ=255)
tCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACa > 5:123735/1‑138 (MQ=255)
tCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCAACGTCAGATTTTGCAGCAACATTGGCATGTTTTCCACCGGCGAAACGTAAACCGAAAGAAGACTGGCGGGCATCATAAAGACa > 3:328402/1‑138 (MQ=255)
ccTTCAAATAAATCTGCTTGGTAATTTCCGTAAAGTGGAGAATAGGGTTTATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGTAGAATGGCGGGCATCATAAAGACaa > 6:748725/1‑138 (MQ=255)
ttCAAATAAGTCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCCCGTCAGATTTTGCAGCCACATTGGCATGTTTTCCAACGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAATCAAacac > 8:116028/1‑140 (MQ=255)
cAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAATCGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGc > 7:101291/1‑140 (MQ=255)
cAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAacac > 2:118989/1‑138 (MQ=255)
cAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGCTTAATCCACGTCAGATTTTGCAGCCACATTGTCATGTTTTCCACCGGCGAAACGTAACCTGAAAGGATAATGGCGGGCATCAAAAAGACAAACACGc > 7:881447/1‑140 (MQ=255)
tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATaa > 4:182438/1‑138 (MQ=255)
tGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAATGAGAATGGCGGGCATCATAAAGAGAAACACGCCGATAAAc > 6:88516/1‑138 (MQ=255)
tctgggTAATGTCCTTAAATTGGGTAATTGGGTTAACACCGGTCAGATTTTGCAGACACATTGGCATGTTTTCCACCGGCGACACGTACCCGCAAAGGAGAATGGCGGGAAACATAAAGACAAACACGCCGATAAACg < 4:98928/134‑1 (MQ=255)
gcgtGGTAATGACCGTAATGTGGCGAATTGGTTAAATCCACTTATGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCTAAACGTAACCGTAAAGGTTAATGGCGGGAATCTTAAAGAAAAACACGCCGATAAACGcc < 8:714453/137‑1 (MQ=255)
cTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCCCATTGGCATGTTTTCCCCCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGCCAAACACGCCGATAAACGCct > 8:642853/1‑140 (MQ=255)
cTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCct > 7:810098/1‑140 (MQ=255)
ttatgttCCGTAAAGTGTCTAATAGGGTTAATCCCCGTCATATTTTGCAGCCACATTGGCTTGTTTTCCACCGGCTAAACGTACCGGGAAAGTACATTGGCGGGAATCATAAATACAAACACGCCGATAAACGCctgc < 6:725577/132‑1 (MQ=255)
ttAATGTCCGTAAAGTGGCGAATTGGGTTAATCCACGTCCTTTTTTGCACCCACATTGCAATGTTTTCCACCGGCTAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAACGACAACCACGCCGATAAACGCctgctg < 8:439170/139‑1 (MQ=255)
ttAATGCCCGTAATGGGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCTAAACGTAACCGGAACGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCctgc < 4:357016/137‑1 (MQ=255)
tttGTCCGTACTGTGGCTATTTGGTTTAATCCAGGTAATATTTTGACGCAACATTGGCATTTTTTCCACGGGATAATCGCAACCGGAAAGTAGATGGGGGGGCATAATCAATACAAACACGCCGATAAACGCctgctg < 6:508105/136‑1 (MQ=255)
aaTGTCCGTAAAGTGGCGAATAGGTTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTACCCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCctgctg < 2:434593/138‑1 (MQ=255)
ccGTAATGGGGCGAATAGGGTTAATCCACGTCATATTTTGCAGCCACATTGGCATGTTTCCCACCGGCTAACCGTAACCGCAAAGGATAAGGGCGGGAAACATAAAGACAAACACGCCGATAAACGCCTGCtgttgtg < 1:736040/138‑1 (MQ=255)
cGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGATAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAACCGCCTGCtgttgtgt > 6:136072/1‑138 (MQ=255)
cGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgt > 3:368411/1‑138 (MQ=255)
cGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgt > 1:980768/1‑138 (MQ=255)
tAAAGTGGCTAATAGGGTAAATCCACGTCAGATTTTGCCGCCAAATGGGCATGTTTTCCCCCGGCGAAACGTACCCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgttg < 4:483871/138‑1 (MQ=255)
aaatgTGCCGAATTGGTTAAAACCAGGTCATATTTTGCAGCAACTTTGGATTGTTTACCACCGGCTAAACGTAACCGTAAAGTATAATGGCGGGATTCAAAAATACAAACACGCCGATAAACGCCTGCTGTTGTGTTGaa < 8:466400/136‑1 (MQ=255)
aaactgggCTAATCGGGTTAATCCCCGTCAGATTTTGCAGCCACTTTGGCATGTTTACCCCCGGCTAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGaa < 8:897732/134‑1 (MQ=255)
atgcggCGAATAGGGTAAACCCACGGAACATTATGAACCCACATTGGCTGGTTTTCCACCGGCCAAACGAACCCTGAAAGGTGAAGGGCGGGCATCAAAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACa < 8:106834/136‑1 (MQ=255)
aaGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGaa > 3:702049/1‑138 (MQ=255)
aGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGatc > 1:530884/1‑136 (MQ=255)
tGGCGAATAGGGTTAATCCACCTCAGATGTAGCAGCCACAATGGCATGTTTTCCACCGGCGAAACTTAAACTGAAAGGAGAATGTCAGGCATCATAAAGAAAAAAACGACGATAAACGCATGATGTTATGATCAACagat > 8:492855/1‑139 (MQ=255)
gcttaTAGGGTTAATCCCCGCCATTTTTTGCAGCCACATGGGCATGTGTTCCACGGGCGATACGTCACCGGAAAGGTTACTGGCGGGCATCATAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACagag < 6:750029/134‑1 (MQ=255)
gCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACagag > 2:968553/1‑138 (MQ=255)
gCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACagag > 1:625638/1‑138 (MQ=255)
gCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAAACGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGACGATAAACGCCTGCTGATGTGTTGAACagag > 2:498794/1‑138 (MQ=255)
cGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACCCCGCTAAACGCCTGCTGTTGTGTTGAACAGAGt > 5:471827/1‑138 (MQ=255)
aaTAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTACCCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtga > 3:63037/1‑138 (MQ=255)
ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGCACAGAGTGATGAAATc > 6:975379/1‑138 (MQ=255)
ccACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAg > 5:825269/1‑138 (MQ=255)
ccACGTCAGATTTTGCAGACACATTGGCATGTTTTCAACCGGCGAAACGTCACCGGAAATGAGAATGGCGGGCAGCATAAAGACACACACGCCGATAAAAGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCATCAg > 5:635431/1‑138 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCTAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATACACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 8:431696/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTaa > 8:605993/1‑49 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTaa < 7:605993/49‑1 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAAcagacaga > 7:51146/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 8:664304/1‑140 (MQ=255)
tCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTaa > 6:720881/1‑47 (MQ=255)
tCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTaa < 5:720881/47‑1 (MQ=255)
tCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCgc > 6:852282/1‑137 (MQ=255)
tCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 3:234355/1‑138 (MQ=255)
tCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 4:102868/1‑138 (MQ=255)
agtttttGCACCCAAATTGGAATGTTTTCAACCGGCTAAACGTAACCGGAAAGTAGAATGGGGGGCATAATAAAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAAt < 2:521568/135‑1 (MQ=255)
ttttGCAGCCACATTGGCATGTTTTCCACCGGCTAAACGACACCGTAAAGGAGACTGGCGGGCATCATAAAGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATccc < 4:606022/138‑1 (MQ=255)
ttttGCACCCAATTTGGCATTTTTACCCCCGGCGAAACGTAACCTTAAAGGAGAAGGGCGGGAATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATccc < 1:205011/138‑1 (MQ=255)
ttttGACGCCAATTTGGCATGTTTTCCACCGGCTAAACGTAACCGTAACGGATATTGGCGGCCATCAAAACTACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATccc < 5:166715/138‑1 (MQ=255)
tttGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCcca > 3:53779/1‑138 (MQ=255)
tGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAg > 7:102050/1‑140 (MQ=255)
tGCAGCCACATTGGCATGTTTTCAACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATTAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCcaaccat > 7:267287/1‑139 (MQ=255)
cAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAg > 3:166736/1‑138 (MQ=255)
cccattttGTCATGTTTGCCCCCGGCTCAACTTACACGGACCGTAGATTGGCGGGCTTCTTAATGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGAt < 7:247374/134‑1 (MQ=255)
ccaatttGGAATGTTTTCCACCGGCCAAACTTAACCGTAAAGTAGAATGGCGGGCATCAAAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATa < 7:663828/135‑1 (MQ=255)
ccACATTGGAATGTTTTCCACCGGCTAAACTTAACCGGAAAGTAGAAGGGCGGCCATAATAAACCAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGa < 1:819567/138‑1 (MQ=255)
acagacagTTTTCCACCGGCTAAACGTAACCGCAAAGGATAAGGGCGGCCATCATAAACCCAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCg < 8:842794/133‑1 (MQ=255)
gatttCCAACGGCTCAACGTAACCGGAAAGGAGAATGGCGGGAATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGAGGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAac > 2:277769/3‑138 (MQ=255)
ttttCCTCCGGCCAAACGTACCGGGAAAGGACAATGGCGGGCTTCATAATTACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAacc < 4:113764/138‑1 (MQ=255)
ttttCCAGCGGGTAAACTTAACCGGAAAGGATAATGGGGGTCATAAAATATACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAacc < 1:563869/138‑1 (MQ=255)
ttgcACCGGCGAAAGGAACCCTGATCGGTGAAGGGGGGGCATCAAAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAAccacca < 8:393741/137‑1 (MQ=255)
ccccGGCTAACCGTACCTGGAATGGAGAATGGCGGCCACAAAAAAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 8:703611/138‑1 (MQ=255)
ccccGGCTAAATGTAACCGTAACTGTGAATGGCGGTCATCATAAACAACAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGAACGAATCCCACCAGTGATAAACCGTAAACCACCAt < 5:346780/136‑1 (MQ=255)
cACGGGCGAAACTTAACCGGAATGGAGTTTGGCGGTCATCATAATGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCAt < 3:588826/138‑1 (MQ=255)
cACCGGCTAAACGTAACCGTAAAGCAGTATGGCGGGAATAATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 7:52664/140‑1 (MQ=255)
cACCGGAGAAACGTAACCGGAAAGTACAATGGCGGGCATAATAAACACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCAt < 1:2374/138‑1 (MQ=255)
cgggCTAAACTTAACCGTAATGTATATTGGCGGTCATAATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 5:295180/136‑1 (MQ=255)
ccGGCTAAAGTTAACCTGAAAGGATATTGGCGGGCATATTAAAGACAACCACGCCGATAAACGCCTGATGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 4:95765/138‑1 (MQ=255)
ccGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAATCCACCATCg > 2:668295/1‑138 (MQ=255)
ccGGCATAACGTACCCGGAACGGAGATTGGCGGCCATCTAAAAGACACACACGCCGATAAACGCCTGCTGTTGTGATGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACGGTAAACCACCATCGTa < 8:310218/140‑1 (MQ=255)
cGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATctgtctct > 7:842794/1‑133 (MQ=255)
gAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAg > 4:1022455/1‑138 (MQ=255)
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GCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGT > NZ_CP022686/4331766‑4332035
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
