Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,331,909 |
G→T |
16.7% |
S299Y (TCC→TAC) |
ybhR ← |
ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,331,909 | 0 | G | T | 16.7%
| 329.9
/ 4.7
| 188 | S299Y (TCC→TAC) | ybhR | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (88/52); new base T (2/39); total (90/98) |
| Fisher's exact test for biased strand distribution p-value = 6.65e-12 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 188 total aligned reads displayed.
AAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAA > NZ_CP022686/4331771‑4332039
|
aaaCTATTCCACACAATATCCAGACTCTCCTCCTTCAAATCAATCTTCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGACAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGa < 3:548932/140‑1 (MQ=255)
aaaCTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGa < 6:516390/140‑1 (MQ=255)
aaaCTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGa < 4:975814/140‑1 (MQ=255)
ttacacacaATATCCAGACTAGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTTGCTAATAGTGTTAATACACGTCATATTTTGCAGACACATTGGAATTTTTTCCACCGGAGAACCTTAACCGTAAAGgat > 4:749871/4‑139 (MQ=255)
ttCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAATCTTAACCGGAAAGtag > 3:652322/1‑140 (MQ=255)
ccccacaATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTGTCCACCGGCGCACCGTAACCGGAAAGgag > 7:778469/4‑138 (MQ=255)
acacaATATCCAGACTCGCCTCCTTCAAATAAATCTGCTTGGTAATGTCCGTCAAGTGGCGAATAGGGTTAATCCACGTAAGATTTTGCAGCAACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGaa < 8:639221/138‑1 (MQ=255)
cacaATATCCAGACTCGCAACCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCAACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATgg > 6:649550/1‑140 (MQ=255)
caATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGACAGATTATGCAGCCACATTGGCATGTTTTCCACCGTCGAAACGTAACCGGAAAGGAGAATgg > 7:230067/1‑138 (MQ=255)
aaTATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCgg > 1:662119/1‑140 (MQ=255)
aaTATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCgg > 2:770960/1‑140 (MQ=255)
atatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCggg < 4:917429/140‑1 (MQ=255)
tatCCATCCTCGAATCATTCCAATCAATCTGCTTTGTAATGTCAGTAAAGTGGCGAATAGGGTTACTCCACGTCAGATGTTGCAGCCCCATTGTCATGTTTTCCACCTGCGCAACGTAACCGGAAAGGAGAATGTCGTGc < 6:923527/140‑1 (MQ=255)
tatCCAGACTCTCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGGTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGc < 6:206773/140‑1 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCGACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAACGGTAACCGGAAAGGAGAATGGCgg > 7:289581/1‑138 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCTGCCACATTGGCATGTTTTCCACCGGCGCAACGTAACCGGCAAGGAGAATGGCgg > 8:971421/1‑138 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGc > 1:822098/1‑140 (MQ=255)
tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGc > 5:646593/1‑140 (MQ=255)
tatCCAGACTCGAATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGc < 6:919459/140‑1 (MQ=255)
tCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGACTGGCGGGc > 8:739034/1‑138 (MQ=255)
tCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGc > 8:564107/1‑138 (MQ=255)
gACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATa < 5:352943/140‑1 (MQ=255)
gACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCAACGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATa > 1:476893/1‑140 (MQ=255)
gACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGAGTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTACCCGGAAAGGAGAATGGCGGGCATCATa > 4:803033/1‑140 (MQ=255)
cGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACCTTGGCATGTTTTCCCCCGGCGAAACGTAACCGGAAAGGAGAATGGCGGTCATCATaacgc > 4:642441/1‑137 (MQ=255)
cATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGa > 7:925265/1‑138 (MQ=255)
cATCCTTCAAATAAATCTGCTGGGTAATGTCCGTAAAGTGTCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACa > 2:990470/1‑140 (MQ=255)
tCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGCCa > 7:309201/1‑138 (MQ=255)
tCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACa > 8:278436/1‑138 (MQ=255)
tCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACa > 8:80499/1‑138 (MQ=255)
tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGa < 6:474103/97‑1 (MQ=255)
tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGa > 5:474103/1‑97 (MQ=255)
gCTTGGTAATGCCCGTACAGTGGCCTATAGGGTTAATCCACGTCAGATTTTGCACCCACATTGGCATGTTTTCCCCCGGCGAACCGTACCGGGAAAGGCGAATGGCGGGAATCATAAAGACAAACACGCCGATAAACGcc < 2:1035437/140‑1 (MQ=255)
cTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCct > 1:1075149/1‑140 (MQ=255)
ttGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCCCGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCctg > 6:31820/1‑140 (MQ=255)
ttattGTCCTTAACGTGGCGAATAGGGTTAATCCACGTAAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAACCGAAACCGTAAAGGAGAAGGGCGGGCATCAAAAAGAAAAACACGCCGATAAACGCctgctg < 6:451955/136‑1 (MQ=255)
ttattGTCCGTAAAGGGGCTAATTGGGTTAATCCACGTCAGATTTTGCAGCCACTTTGGCATGTTTTCCACCGGCGAAACGAACCCGTAACGTAGAATGGCGGGCATCATAACGACAAACACGCCGATAAACGCctgc < 8:306121/134‑1 (MQ=255)
tAATGTCCGTAAAGTGGCGAATAGGGTTAATACACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgt > 6:71561/1‑140 (MQ=255)
aaTTTCCGTAAAGTGGCTAATTGTTTTAATCCACGTCAGTTTTTGCAGCCACATTGGCTTGTTTTCCACGGGCGAAACTTAACCGTAACGTAGATTGGCGGTCATCATAAACAAAACCACGCCGATAAACGCCTGCtgtt < 2:662119/140‑1 (MQ=255)
aaTGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGAAAAACACGCCGATAAACGCCTGCtgtt < 1:41627/140‑1 (MQ=255)
tGTCCGTAAAGTGGCGAATAGGGTTAATCAACGTCTGATTTTGCAGCCACATTGGCATGTTTTCCACCGTCGAAACGTAACCGGAAAGGATAATGGCGGGCATCATAAAGCCAAACACGCCGATAAACGCCTGAtgttgt > 6:250239/1‑140 (MQ=255)
gTCCTTAATGTGGCGTATTGGGTTAAGCCTCGTCATATTTTGCTCCCAAATTGGCTTGTTTTCCACGGGCGAAACTTAACTGGAACGGAGAAGGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtg < 6:765274/140‑1 (MQ=255)
gTCCGTAAAGTGGCTAATAGGTTTAATCCACGCCATATTTTGCACCCAAATTGGCATGTTTACCACCGCCTAAACGTACCCTTAACGCAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtg < 2:893431/140‑1 (MQ=255)
tCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgt > 3:309163/1‑140 (MQ=255)
cagTAAAGTGGCCAATAGGGTTAAACCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACAGGAAAGGAGAATGCCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgtagtgtt > 2:75480/3‑140 (MQ=255)
aaactgggCTAATAGGGTTAATCCACTTCAGTTTTTGCAGCCACTTTGGCTTGTTTTCCACGGGCGAACCGTAACCGTAAAGGAGAAGGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCtgttgtgttg < 8:10185/132‑1 (MQ=255)
ggCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGt > 2:1102593/1‑140 (MQ=255)
gCGAATTGGGTTAAGCCACGTCAGATTTTGCAGCCACTTTGGCTTGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtg < 4:236873/140‑1 (MQ=255)
gCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCGGTTGTGTTGAACAGAGtg > 5:713616/1‑140 (MQ=255)
gCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATAGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCATGCTGTTGTGTTGAACAGAGtg > 3:214676/1‑140 (MQ=255)
gCGAAGCGGGTAAAACCCCGCCAGATTTTGCACCCACATTGGAAGGTTTTCCACCGGCGAAACGTAACCGTAAAGGAGAATGGCGGGCATCATAAACCAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtg < 2:477235/140‑1 (MQ=255)
cccaaTAGGGTTAAGCCACTTCATATTTTGCAGCCAATTTGGCTTGTTTTCCACGGGCGAACGGTAACCTGAATGGAGAATGGCGGGCAACATAAACACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtg < 2:291297/137‑1 (MQ=255)
cGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtga > 2:210029/1‑140 (MQ=255)
cGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGt > 7:459183/1‑138 (MQ=255)
gAATAGGGTTAAACCACGTCAGATTTTGCCGCCACATTAGCATGTTTTCAACCGGCGAAACGTAACCTGAAACGAGAATGGCGAGCATCATAAAGACAAACACGACGATAAACGCCTGCTGTTCTGTTGAACAGAGtg > 7:133490/1‑138 (MQ=255)
ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa > 5:477400/1‑140 (MQ=255)
ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa < 2:822098/140‑1 (MQ=255)
ttAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa > 2:168755/1‑140 (MQ=255)
ttAATCCACGTCAGATTTCGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa > 6:965197/1‑140 (MQ=255)
aCGTCAGATTTTCCACCAAAATTGGCAGGTTTTCCCCCGGCGAAACGAAACCGTAAAGGATAATGGCGGGCATAATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCg < 5:383061/140‑1 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 1:957192/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 3:1080842/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 4:179818/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 2:511939/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTGGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 2:436365/1‑140 (MQ=255)
cGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCAAAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGa > 4:320029/1‑140 (MQ=255)
gTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGaa > 4:530227/1‑140 (MQ=255)
tCAGCTTTTGCAGCCACATAGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACACACACGACGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGAcccc > 8:7033/1‑136 (MQ=255)
tCAGATTTGGCAGCCACATTGGCAGGTTTCCCCCCGGCTAAACGTACCCGGAACGGAGATTGGCGGGCATCATAACTCCAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAAt < 6:1024281/140‑1 (MQ=255)
gcAGATTTTGCAGCCACATTGGCAGGTTTTCCACGGGCGAAACGTAACCGGAACGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAAt < 4:820316/139‑1 (MQ=255)
ttttTCACCTACATTGTCATGTTTTCAACCGGCTAAACGTAACCGTAACGTTCAATGGGGGGCATATAAAATAAAAACAAGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 5:31820/140‑1 (MQ=255)
ttttGCAGCCACTTTGGCATTTTTTCCACGGGCTCAACTTAACTGAATCGTAGATTGCCGGGAATAATAAAGAAAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 4:81367/140‑1 (MQ=255)
ttttCCACCCACATGGGCTTTTTTGCCCCCGGCTAAACGAACCCGTAAAGGATATTGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 1:628877/140‑1 (MQ=255)
tGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAg > 2:773780/1‑140 (MQ=255)
cctctttGTCATGTTTGCACCCGGCTAAACTTAACTGTAATGTAGATTGGCGGTCATATTAATCACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACTGAATCCCACCAGTGATa < 2:444177/135‑1 (MQ=255)
ccaatttGGCTTGTTTTCCCCCGGCTAAACGTACCCGTAATGGATAATGGCGGGAATAATAAACACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATa < 3:210752/135‑1 (MQ=255)
ccACATTGTAATTTTTTCCACCGGCTAAACGTAACCGTAATGGTTAATGGCGGGCATAATAAAGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATa < 1:266263/140‑1 (MQ=255)
ccACATTGGCTTGATTCCCCCGGGTCACACGAAAGCGAAATGGAGAATGGCGTCAAACTAAACCACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATa < 2:172663/140‑1 (MQ=255)
ccACATTGGATTGTTTACCCCCGGCCAAACGTACCCGTTAAGCACAATGGGGGCCATCAAAAACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGtta < 7:878678/138‑3 (MQ=255)
caacaTTGGAATTTTTTCCACCGGCTAAACGTATCTGTAAAGCACACTGGCGGTCATCATAAACCAAAACACGCCGATAAACTCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATa < 5:776799/138‑1 (MQ=255)
caaaaTTGGAATTTTTACCCCCGCCCAAACTTAACCGGAAAGGAGACTGGCGGTCATAAAAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATa < 1:1098092/136‑1 (MQ=255)
aTGTTGTCCACCGGCGAAACTTAACCGGAAAGGAGAATGGCGGGCATCAAAAAGACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAac < 5:253392/140‑1 (MQ=255)
ttttCCACCGGCTAAACGTAACCGTAAAGGCTAATGGCGGGAATCATAATTAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccac < 3:85536/140‑1 (MQ=255)
ttttCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATACACCGTAAaccac > 3:780027/1‑140 (MQ=255)
ttttCACCCGGCTAAACGTAACCGTAAAGGATATTGGCGGCCATAATAAACAAAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccac < 1:328627/140‑1 (MQ=255)
tttcCCACGGGCGAAACGTAACCGCAAAGGAGATTGGCGGCCAACATAACGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAacc < 8:356466/138‑1 (MQ=255)
tttcCCACCGGCCAAACGAACCCGTAAAGGAGAATGGCGGCCATCAAAAACCCAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccac < 5:90566/140‑1 (MQ=255)
tttCCACCGGCGAAACGTACCCGGAATGGAGATTGGCGGGCATAATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAaccacc < 3:749273/140‑1 (MQ=255)
ccccGGCTAAACTTAACCGTAATGTTTAATGGCGGGAATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 5:592443/138‑1 (MQ=255)
ccccGGCTAAACGTAACGGTAAAGGATAATGGCGGGCTTCTTAATCAAAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 3:401411/138‑1 (MQ=255)
cACGGGCTAAAGTTACCCGGAATGGAGAAGGGCGGGAATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 4:1039183/140‑1 (MQ=255)
cACGGGCAAAACGTAACCTGAAAGGAGAATGGGTCGCATAAAAAATAAAACCACTCCGATAAACGCCTGCTTTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 3:720655/140‑1 (MQ=255)
cACCGGCTAAACGAAACCGGAAAGTAGAATGGCGGGCATCATAAAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 6:188800/140‑1 (MQ=255)
cACCGGCGAAACGTCCCGGGAACGGAGAAGGGGGGGCTTCATAATGACCAACACGCCGATAAACGCCTGCGGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 6:591114/140‑1 (MQ=255)
ccGGCGAAATTTAACTGTAATGTATAAGGGGGGCAATAAAAAACAAAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTa < 1:123248/140‑1 (MQ=255)
ccGGCCAAACTTACCCGTAAAGGATAATGGCGGGCATAAAAAAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCg < 7:183372/138‑1 (MQ=255)
gCGAACCGTAACCGGAAAGTAGAATGGGGGGCATCAAAAACACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAg < 3:237981/140‑1 (MQ=255)
gCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAACCCACCATCGTAAAg > 1:283149/1‑140 (MQ=255)
aaaCTTAACCGGAAAGTATAATGTGGGGCATAATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCTACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAg < 2:1075149/140‑1 (MQ=255)
aagTAACCGGAAAGGAGAATGGCGGGCAACAAAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACAGAATCCCACCAGTGATAAACAGTAAACAACCATCGTAAAGTat > 7:16545/3‑137 (MQ=255)
|
AAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTTAATCCACGTCAGATTTTGCAGCCACATTGGCATGTTTTCCACCGGCGAAACGTAACCGGAAAGGAGAATGGCGGGCATCATAAAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGTGATAAACCGTAAACCACCATCGTAAAGTAGAA > NZ_CP022686/4331771‑4332039
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
