Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,371,086 |
G→T |
21.1% |
E34* (GAA→TAA) |
bamD → |
outer membrane protein assembly factor BamD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,371,086 | 0 | G | T | 21.1%
| 380.5
/ 18.7
| 211 | E34* (GAA→TAA) | bamD | outer membrane protein assembly factor BamD |
| Reads supporting (aligned to +/- strand): ref base G (116/36); new base T (2/53); total (118/93) |
| Fisher's exact test for biased strand distribution p-value = 1.04e-22 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 215 total aligned reads displayed.
AGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCC > NZ_CP022686/1370947‑1371220
|
aaTCTCCCGTATTACATTTTGAGGTTAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGAAGCCGCCACAGTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAAACCGCCAAA‑TGaa > 2:1353253/1‑140 (MQ=255)
aaTCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGaa > 6:120534/1‑140 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGaa > 3:603373/1‑138 (MQ=255)
tctcCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAAAATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATACGCCAAA‑TGAAAt > 7:191082/1‑140 (MQ=255)
cccGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTa > 2:866845/1‑140 (MQ=255)
aCATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTg > 2:771062/1‑140 (MQ=255)
tGAGGAAATTCAAACCGTCATGACGCGCATTAAATATCTGGTGGCAGCCGCCACACTACGCCTGTTTTTGGGGGGTTGCGCGGGGTCAAAGGAACAAGTACCTTATAATCCGCCAAA‑TTAAATTTCCGCGACTGCacaac < 2:447220/140‑1 (MQ=255)
gcggAAAGGCAAAACGTCATGACGCGCATTAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCacaaca < 8:10714/138‑1 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGATGAACTACCTGATAATCCGCAAAA‑TGAAATTTCCGCGACTGcacacaaa > 7:341225/1‑136 (MQ=255)
aGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCacaac > 3:188519/1‑138 (MQ=255)
gAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCAcaacaa > 3:698378/1‑138 (MQ=255)
aCGTCATGACGCGTATGAAATATCTGGTGGCAGCCGCCACACTAAGCGTGTTTTTGGGGGGTTGGTCGGGTTCAAAGGAAGATTTACCTTATAATCCGCCAAA‑TTAAATTTACGCGACTGCACAACAAAAGCTGCAgg < 4:984773/138‑1 (MQ=255)
aCGTCATGACGCGCATTAAATATCTGGTGGCAGCCGCCAAACTAAGCCTTTTTTTGGCGGGTTGCTCGGGGTAAAAGTAACAAGTACATCATACTCCGCCAAA‑TTAAATTTACGCGACTGCACAACAAAAGCTGCAGGAc < 6:783826/140‑1 (MQ=255)
tcctgccgctCATGAAATAGCTGGGTGCCGCCGCCAAACTAAGCCTGTTTTGGGGGGGTGGCTCGGGGGCAACGTAAGAAGTACCTTATATCCCCCAAAA‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGt < 7:28127/134‑1 (MQ=255)
cATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGtt > 2:1125120/1‑139 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTCCCTGATAATCCGCCAAA‑TGAAATTTACTCGACTGCACAACAAAAGCTGCAGGACGGTaa > 1:1273517/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 6:567671/1‑140 (MQ=255)
aTGACGCGCATGAAATATCTGGTGGCAGCCGCCACACGAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTaa > 8:750149/1‑140 (MQ=255)
tGACGCGCATTAATTATCTGGTGGCAGCCGCCACACTAAGCGTGTTTTGGGCGGGTTGGTGGGGGTCAAAGGAACAAGTACCTTAAAATCCGCAAAA‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAAc < 2:688850/140‑1 (MQ=255)
tGACGCGCATTAAATATGTGGGGGCAGCCGCAACACTAAGCCGGTTTTGGGCGGGTTGCTCGGGGTCAAAGGATGAAGTACCTTATAAACCACAAAA‑TGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTa < 4:1325587/138‑1 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 1:157451/1‑140 (MQ=255)
cATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGAc > 5:951026/1‑140 (MQ=255)
aaaTATCTGTGGGCATCGTCCACATTAACCCTTTTTTTGGCTGGTTGCTCGGTGTCAATGGATGATGTAACTTATAATACGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAg < 4:1156291/138‑1 (MQ=255)
ttggAAGCCGACACACAAAGCATGTTTTTGGCGTGTTGCACGGTGTAAAAGGAATAATTACCTGATAATAATACAAA‑TTAAATTTAAGCGACTGCACAACAAAAGCAGCTGGAAGGTAAATGGAGACAGCAAATAAAGCa > 6:135071/2‑140 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACTCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCa > 6:325795/1‑140 (MQ=255)
gtggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGCCGGTAACTGGAGACAGGCAATAACGcc > 7:1177119/1‑139 (MQ=255)
gtggCAGCCG‑CACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCaa > 2:1280054/1‑140 (MQ=255)
gggtcgccgccACAATATTCCTTTTTTGGGCGGGTTGCTCGGGGAAATAGTAAGACGTACCTTATAATCGGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGc < 4:1228234/133‑1 (MQ=255)
ggCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGAACAACAAAAGCTGCAGGACGGTAACATGAGACAGGCAATAACGcc > 3:1012772/1‑137 (MQ=255)
cAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg > 6:908106/1‑140 (MQ=255)
agcagcCACAATATGCCTGTTTGTGGGGGGCTGCGGGGGTTCAAACTACTAAGAACCTGATAATCGGCCATA‑TTAATTTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 6:1013324/140‑1 (MQ=255)
aGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg > 8:680324/1‑140 (MQ=255)
aGCCGCCACAATAAGCTTTTTTTTGGGGGGTTGCTCGGGGTAAAAGGAACAAGTACATTAAAATCCGCCAAA‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 1:837890/140‑1 (MQ=255)
gccgccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa > 1:72287/1‑140 (MQ=255)
ccccccACAATAAGCCGGTTTGTGGCGGTGTGCGGGGGGACAACGCAAAACGAACCTAATAAACCGCAAAT‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTg < 3:32651/134‑1 (MQ=255)
cgccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGa > 4:59262/1‑138 (MQ=255)
gccACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGaa > 3:958414/1‑138 (MQ=255)
ccACACTACGCCTGTTTTTGGCGGGTTGCGGGGGGTCAAAGCACGACGTCCCTTATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAg < 4:794624/138‑1 (MQ=255)
cacaTTACGCGTTTTTTTGGCGGGTTGCTGGGGGACAAAGCAATATTTAGCTTTAAATCGGCAAAT‑TTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 1:598247/140‑1 (MQ=255)
aacatcaaGCATGTTTTTGGCGGGTTGTTCGGTGTCAATGGATTAAGTACGTTAT‑TCACGCAAAATTTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 5:568505/134‑1 (MQ=255)
aaaacTACGCGTGTTTTGGGGTGGTTGCGCGGGTCCAAAGCAAGAAGTACCTGAAAACCCCCAAAA‑TTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGt < 5:901677/137‑1 (MQ=255)
tttaGCGTGTTTTTGGGGGGTTGCTGGGGGTCAAAGGACTAAGAACTTTTAAATCCTAAAAA‑TTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGa < 1:114249/137‑1 (MQ=255)
cTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGa > 1:678501/1‑140 (MQ=255)
ataccccTGTTTTTGGGGGGTTGCTGGGGGTCAACGTAATAATAACTTGAAAAGCCCCAAAT‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGa < 7:1060830/135‑1 (MQ=255)
tacgCCTGTTTTTGGCTGGTTGCGCGGGTACAACGTAAGAAGTACCATAAAAACCCCCAAA‑TTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGAt < 1:499359/137‑1 (MQ=255)
aaGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATa > 8:563153/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 6:402024/1‑140 (MQ=255)
aGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATaa > 7:986771/1‑140 (MQ=255)
gCCTGTTTTTGGCGGGTTGCTCGGGGCAAACGCAAGAACTCCCTGAAAATCCGCCAAA‑TGAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAAt < 2:116772/140‑1 (MQ=255)
ccTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGATCCAGGCAATAACGCAACTGGAAGCGTTAGATaa > 4:126201/1‑138 (MQ=255)
ccTGTTTTGGGGGGTTTGGTGGGTGTCAAAGTAATAATAACATTAAATTCCCCAAAA‑TGAAATATCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATc < 1:40714/140‑1 (MQ=255)
tttttttGGCGGGTGGGGGTGGGTCAACGCAACACGAACCTCAAAAACCGCAAAA‑TTAAATTTACGCGACTTCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGc < 7:538859/138‑1 (MQ=255)
tttttGGGGGGTTGCGCGGGGCCAACGTAAGATGACCCTGATAATCCGCCAAA‑TGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 6:802449/140‑1 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 1:1091517/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:751222/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:819130/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa > 5:201104/1‑140 (MQ=255)
tttttGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTCCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTATATAATCGCtt > 7:645108/1‑139 (MQ=255)
tttttGGCGGGTAGCTCGGGGTAAAAGCAACAACTACCTTAAAATCCGCCAAA‑TTAAATTTCCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTa < 2:123977/140‑1 (MQ=255)
tttGGCGGGTTTCTCGGTGTCAAAGGAAGAAGAACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCATCACGGTAACTGTAGACAGGCAATAACGCAACTGGAATCGTTAGATAATCGCTa > 4:735589/1‑138 (MQ=255)
ggCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGt > 8:1218779/1‑140 (MQ=255)
ggTTGCTGGGGGACCATGTATGAAGTACCTTATAAGCCGCCAAA‑TTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTgg < 8:293336/140‑1 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGATGCGTTAGATAATCGCTATCCGTTTGGt > 8:169712/1‑140 (MQ=255)
gTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGt > 5:468972/1‑140 (MQ=255)
caagatgTACCTTATAATCCCCCAAA‑TGAATTTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGt < 8:1122349/139‑1 (MQ=255)
aagacgTACCTGATAATCCGCCAAA‑TGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTg < 2:718982/140‑1 (MQ=255)
agaagTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 6:486178/1‑140 (MQ=255)
agaagTACCTGATAATCCGACAAA‑TGAAATTTAAGCGACTGCACAAAAAAATCTGCAGGACGGTTACTGGAGACAGGCAATAACGCAACTGGAAGCGTATGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGc > 6:608781/1‑140 (MQ=255)
gaagTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGGAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTGTGGTCCGTATTCGCAGCAGGTGcc > 2:741477/1‑139 (MQ=255)
cgTACCTTATAAACCGCCAAA‑TTAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 1:603773/139‑1 (MQ=255)
agTACCTTATAATCCCCCAAA‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 8:216945/140‑1 (MQ=255)
agTACCTGATAATCCGCCAAA‑TGAAATTAACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGc < 2:482637/140‑1 (MQ=255)
ctcaTACTCCGCAAAA‑TTAAAATCACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGCGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 1:1021831/137‑1 (MQ=255)
cTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 1:934209/1‑140 (MQ=255)
cTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt > 8:483273/1‑140 (MQ=255)
cTGATAACCCGCCAAA‑TTAAATTACCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAt < 5:1221770/140‑1 (MQ=255)
attaTAATCCGCAAAT‑TTAAATTTCCGCGACTCCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTgg < 3:558349/135‑1 (MQ=255)
gATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGAtct > 2:828604/1‑140 (MQ=255)
tAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCa > 8:310468/1‑140 (MQ=255)
aaTCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCAt > 2:951269/1‑140 (MQ=255)
tCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTgg < 7:78215/77‑1 (MQ=255)
tCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 6:98596/1‑140 (MQ=255)
atccccAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCAt > 4:417446/5‑138 (MQ=255)
cGCCAAA‑TGAAATTTGCGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 1:1007872/1‑140 (MQ=255)
cGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATACCGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCTGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 1:382998/1‑140 (MQ=255)
cGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCt > 3:405422/1‑138 (MQ=255)
cGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 1:14908/1‑140 (MQ=255)
gCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACg > 5:865742/1‑140 (MQ=255)
ccAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCTTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc > 3:79291/1‑138 (MQ=255)
ccAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTAAGATAATCGCTATCCGTTTGGTCAGTATACGCAGCAGTTGAAGCTGGATCTCATCTACGc > 2:464828/1‑140 (MQ=255)
caaaa‑TTAATTTTACGCGACTGCACAACAAAAGCTGCAGGACTGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCTTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGc < 2:192868/138‑1 (MQ=255)
caaaa‑TGAAATATACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTAc < 4:1029374/136‑1 (MQ=255)
cAAA‑TTAAATTTACGCGACTGCACACCAAAAGCTGCAGGACGGTAACTGGAGACACGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTAATCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 7:934715/140‑1 (MQ=255)
cAAA‑TTAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 7:581224/140‑1 (MQ=255)
cAAA‑TGAAATATACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 8:545820/140‑1 (MQ=255)
aaaa‑ttaaattTACGCTACTGCACAACAAAAGCTGCAGGACGGTAACTGTAGACAGGCAATAACGGAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 7:1107908/139‑1 (MQ=255)
aaaa‑ttaaattTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 6:207351/139‑1 (MQ=255)
aaaa‑TGAAATTTCCGCGACTGCACAACAACAGCTGCATGACGGTAACTGGAGACAGGCAATAACGCAACTGTAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 6:279464/139‑1 (MQ=255)
aaaa‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 8:595214/139‑1 (MQ=255)
aaattGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGTTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGcc < 2:611225/136‑1 (MQ=255)
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AGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGTACCTGATAATCCGCCAAA‑TGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGCAACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCC > NZ_CP022686/1370947‑1371220
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
