Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,483 |
A→T |
12.8% |
L130F (TTA→TTT) ‡ |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,483 | 0 | A | T | 12.8%
| 377.3
/ 16.6
| 172 | L130F (TTA→TTT) ‡ | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (49/99); new base T (22/2); total (71/101) |
| Fisher's exact test for biased strand distribution p-value = 4.87e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 182 total aligned reads displayed.
CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACA > NZ_CP022686/3797345‑3797620
|
gCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttagtt < 1:297511/140‑1 (MQ=255)
cTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgttatttt > 6:403866/1‑139 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCgttagtta > 4:344465/1‑138 (MQ=255)
cccGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCgtttgttt > 4:1063511/1‑137 (MQ=255)
cGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTAtttt < 6:805289/140‑1 (MQ=255)
gtttATGCAGTCGTTGCAGCAGGTGCTTAATATAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTg < 5:348448/139‑1 (MQ=255)
cTTTATGCAGTCGGTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTg < 8:670888/140‑1 (MQ=255)
tttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGTGTTAttttt > 4:1129011/1‑138 (MQ=255)
ttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTAtttttt > 3:329523/1‑137 (MQ=255)
aaTGCAGTCGTTGAAGCAGTTGATTAATAAAAATGACTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTgg < 4:713547/137‑1 (MQ=255)
aTGCAGTAGTTGCAGCAGGTGCTTAATATATATGAATTCCAGCTACTGCTTGTGTGTCAGGAGTATAATCTTCTCAAAGAATCTGTAATTGTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTGtgc < 7:895655/140‑3 (MQ=255)
cAGTCGTTTCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGAGTTAATTTTTGTtct > 3:646278/1‑138 (MQ=255)
cAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGttat > 4:320762/1‑136 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCACtt > 2:15569/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGGTCTCCGtt > 6:1004645/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAATTATTTTTTGGTCTAAGtt > 1:657408/1‑140 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTTGTTCTCAGTTGGCTg > 8:301809/1‑140 (MQ=255)
cagcagGTGCTTAATAAAATTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCt < 4:610503/138‑1 (MQ=255)
cagcagGGGCTTAATAAAAATGAATGCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCt < 4:983178/138‑1 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATa < 2:74250/140‑1 (MQ=255)
agGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATAAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTTTTCTAATGTGGCGGATaaa > 5:909726/1‑140 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGAAACCCGGCGGCGGTATTTATTTTTTGTTAGAAGTTGGCTGATaaaaa > 8:255887/1‑139 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTCTGTGACATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGATTCTTCAAGGCAACCCGGCGGCGTGAGGTATTTTTGGTTCTCAGTTTGGTTATaaaaa > 6:958297/1‑139 (MQ=255)
tGCTTAATAAAACTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 3:892699/138‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAATAAGCTGATATTCTGATGACGCTTCTTCAAGGCAACCCGGAGGCGTTAGTTATTTTTGGTTCTCAGTTGTCTGATAAAACt < 1:196804/140‑1 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCACCCCGGCGGCGTTAGTTATTTTTTGTTCTCAGTTTGGGTATAAAACTc > 3:959668/1‑138 (MQ=255)
taaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCa < 3:819344/138‑1 (MQ=255)
taaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 7:1218966/140‑1 (MQ=255)
aaaTGAATTCCAGATACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTAAAGGCAGCCCGGCGTCTGTTGTTATTTTTGGTTCTCAGTTGGGTGAGAAAACTAAACCGATag > 2:810330/1‑139 (MQ=255)
aaTTACCGCTACAGCTTGGGAGTCATGAGTATCATCAGCTCACAGAAGCTGAAATTCTGATGACGCTTCTGCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCg < 3:34913/138‑1 (MQ=255)
ttCCAGCTACTTCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAGCAGATACTCGAGaa < 1:122802/140‑1 (MQ=255)
ttCCAGCTACTGGTGGGGTGGCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAAGCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 4:71963/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCTGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:1114450/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 4:788978/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:490233/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:1228178/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:486839/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:704401/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:949416/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:996480/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:849703/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTAGCTGATAAAACTCACCAGATACTCgag < 4:185798/138‑1 (MQ=255)
ttCCAGCAACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:1134635/140‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 3:403805/138‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCGGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 7:1240506/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 3:1199381/138‑1 (MQ=255)
aCTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTGGTTATCAATTTGCGGAAAAAACACACCAAATAAACGAGAAAAAAAata > 6:332847/1‑140 (MQ=255)
gttGGGTGTGATGAGTATAATCAGCTCACAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 4:535899/137‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCATCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:855469/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCACAGCAGCTGAAATTCTTATGACGCTTCTTCAAGGCAACCCGGCGTCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 8:548086/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:975045/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 8:372102/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTATCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 6:1064802/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 5:138837/140‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTGGTTATAAGTTTGGTTAAAAAACTAAACCGAAAGTCGATAAAACAAATTTAACAAACGTTa > 1:772670/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTATGTATTTTTGGTTCTAAGTTGGCGTTTAAAAAACACCAGATACTACATAAAACAAATATACCTACCCTTTAAGTTGt > 7:621992/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGGTTTGCGTTTGGGGATTAAACACCCCAGATACTCGGGAAAACAAAAATAACAACCGTTTACGgtgt > 7:242987/1‑140 (MQ=255)
tataATCAGCTCAAAGAAACTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGt < 1:772739/140‑1 (MQ=255)
ataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGTTCTCATTTGGCGGATAAAAATCGCCAGATAATCCAGAAAAAAAAAATACCTAACGGTAACGTTGtg > 7:824268/1‑139 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAATTATACCTACCGTTAACGTTGt < 3:570640/138‑1 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 2:988666/140‑1 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTTTTTTTTGGTAGTAGTTGGCGGGTTAAACTCAACAGATAATCCAGCAAAAAAATATAACTACCGTTAACGTTGTAGGtt > 7:1068381/1‑140 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 2:1346217/140‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTc < 5:1066686/140‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTATCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGGTAACGTTGTCGGTTccc > 2:1105389/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGTGTTTATTTTTGTTCTGAAGTGGGGGCGAAAAAACACCAGATAAACGAGAAAACAAAAAAACCTAACGGTAACGTTTTAGGTTgcc > 6:154764/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTGGGTGTCAGTTGGCTGCTAAAACAACCCCGATACACGAGAAAACAAAAAAAAAAACCCATAACGTTTTAGGTTccc > 7:548885/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGGTTTTTTTTGTTCTCACTGGGCGGGTTTAACGGACCACATACTCGAGAAAACAAATAAAACAAACCTTAACGTTGTAGGTTacc > 6:547707/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGGTCACAGTTGGCGGATAAAACTCACCAGAGAAGCGGGAAAACAAAAATACCGACCCGTAACGGTGTGGGTTgcc > 2:58714/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCCGTTGGCTGAGAACACGCAGCAGATACTCGAGCAAAAACATGTACCTACCGTGAACGTTTTGGGTTccc > 7:632894/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCGCAGTTGGGGGATTAAACGCACCAGATTCTCGAGAAAACAAATATTCCTACCGTTAAAGTTGTCGGTTccc > 7:1033119/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTGGTTATAAAGTGGCTGATAAAAATAACCAGATAAACGAGCAAACAAATATACCTCACCTTAACGGTGTAGGTTgccc > 8:778833/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGGTATTTTTGGTTCTGACATGGCGGATTAAAAAAAACAGATACTCCTAAAAACAAAAAATCCTACCGGAAACGTTGTAGGTTcccc > 6:1288448/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTAAGGTGGCGGAGAATACTCCCCAGATAAGACAGAAAAAAAATATAAATAGCGGTAACGTTTTAGGGTccc > 4:532776/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGGTTTTTTTTGTTGTCAGTTGGGGGATAAAACACACCAGATACTCGAGAAAACAAATATACCTACAGTTTACGTTGTCGGTTccccg > 6:75012/1‑139 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTATGAGGTGGCGGTTAAAAAACACCATATACAAGAGAAAACAAATAAACCAACCCTTAAAGTTGTGGGttgacc > 3:8124/1‑134 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTATCCGTTTGGTGTTAAAAATGCCCCGATACTCGTGAAAACAAATATAACTACCGTTAAAGGTGTGGGGTgccc > 3:843047/1‑138 (MQ=255)
aagCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTGGTTATAAGTTTGGGGGTAAAAATAACCACATAAGAGGGAAAACAAAAATAACTACCGGTAACGGTGTCGGTTGCCCattga > 3:711955/1‑136 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTGTTCTCAGTTTGCTTATAAAACACACCAGCAACAACAGAAAACAAATATACCAACCGTGAACGTTTGAGGTTAACCATTCAGTccc > 8:1080398/1‑139 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTTGTTATGAGTTGGCGGATAAAACTAACCAGATACTCGAGAAAACAAATATACCTAACGGTAAAGTTGTCGGTTCCCCTTTAAGTCCg > 1:1010221/1‑140 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGTTGTGAGTTGGGGGTTAAAAAACGCCAGCTAAAAGTGAAAACAAAAATAGATACCAGTAAAATTGTCGGTTTCCCAGTCAGTcccg > 2:4118/1‑138 (MQ=255)
gAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTGTTATCAGTTTGGAGATTAAACACACCACATACAAGAGAAAACAAATATAACAAACGTTTACCGTGGCGGTTGCCCGTTAAGTCCg > 4:1231788/1‑138 (MQ=255)
gCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTATCAGTTTGCTGATAAAACAAACCACATACGAGAGAAAAAAAATAAACCAACCCGTAAAGTTGTAGGTTACCCGTTCCGTCCCGCGCAAATTACAAtag > 6:1091988/1‑138 (MQ=255)
tcttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTTGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaaa < 7:793153/140‑1 (MQ=255)
ttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACa < 5:502536/140‑1 (MQ=255)
cAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAAATCACCAGATACTCGAGAAAACAAATATACCTACCGTTAAAGTTGTCGGTTCCCCTTTCAGTCCGGCTAAAATTACCATAGaaaaa > 4:514309/1‑136 (MQ=255)
aaGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAg < 3:782941/138‑1 (MQ=255)
ccGGCGGCGTGAGTTATTTTATGTTCTGAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATCTAACTACCGTTAACGTTGTCGGTTCCCCATTCTGTGCGGCTCAAATTACCATCGAAACAGCATTTTTTGa < 1:1100521/140‑1 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:301809/140‑1 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCATTCAGTCCGGCTCAAATTTACATCGAAACAGCAttttttt > 4:971272/1‑137 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 4:291258/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:310380/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:25681/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:992054/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:885801/140‑1 (MQ=255)
cggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCa < 1:15569/140‑1 (MQ=255)
ggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAACCTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 6:933113/140‑1 (MQ=255)
ggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 1:201177/140‑1 (MQ=255)
cgTGAGTTATTTTTGGTTCTCAGTTCGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATca < 7:382951/140‑1 (MQ=255)
ttagttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATcaca < 1:170195/140‑1 (MQ=255)
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CAGCTCCCGCTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACA > NZ_CP022686/3797345‑3797620
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
