Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F36 I0 R1
|
179 |
8076.5 |
8499890 |
98.3% |
8355391 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,493 |
G→T |
14.9% |
G134C (GGT→TGT) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,493 | 0 | G | T | 14.9%
| 278.8
/ 16.0
| 140 | G134C (GGT→TGT) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (34/82); new base T (22/2); total (56/84) |
| Fisher's exact test for biased strand distribution p-value = 1.21e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 140 total aligned reads displayed.
TTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCG > NZ_CP022686/3797356‑3797631
|
ttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGt < 4:586652/140‑1 (MQ=255)
tATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTTTTTTTTGtt > 1:59818/1‑140 (MQ=255)
aTGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTGGttt > 3:596890/1‑139 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGGTTTTTTTGGttg > 8:678184/1‑137 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCTGCGTTAGTTATTATTGTTTAT‑CAGtt > 2:864502/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGttgtgaatt > 5:555403/1‑133 (MQ=255)
gTTGCCGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCCGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTGATTTTTGGTTGT‑CAttt > 7:926589/1‑138 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCACAGAAGCTGAAATTCTGATGCCGCTTCTTCACGGCACCCCGGCGGCGTTAGGTATTTGTGGTTCT‑CAGGTggg > 2:1035801/1‑139 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTGT‑CAGTTggg > 2:761873/1‑139 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTg < 7:729738/138‑1 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGc < 1:3225/140‑1 (MQ=255)
agGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTGTTTGGTTGT‑CACTTGGGAGATaaa > 3:74423/1‑140 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATaaaa < 2:330962/140‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACt < 5:198730/140‑1 (MQ=255)
tGCTTAATAAAAAAGAAATCCAGCGACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGATCT‑CAGTTGGCTGATAAAACt < 2:244832/140‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCAcc < 1:142829/140‑1 (MQ=255)
aaaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGa < 8:479362/138‑1 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGGTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTTTACGTTTGGGTG‑TAAAAATCACCAGaaaaaa > 1:1100656/1‑135 (MQ=255)
ttCCATCTACTGCTTGGGTGTGATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 4:170891/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCgag < 8:727101/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCgag < 7:212971/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 3:617747/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAAACAGCTCAAAGAAGCTGAAATACTGATGCCGCTTCTTCAAGGCAACCCGACGGCGTTAGTAATATATGGTTCA‑GAGTTGGCTCATAAAACTAACCAAATACTCgtcaa > 6:631720/1‑136 (MQ=255)
ccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 3:151531/140‑1 (MQ=255)
ccAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCAGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTAGGCTGATAAAACTCACCAGATACTCGAGaaaa < 6:553711/140‑1 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTTTTTTTTGGTGT‑AACTTGGGGGATAAAAAAAACCAGATAATCGAGAAAACaa > 4:541602/1‑140 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTATGCTGACGCTTCTTCAAGGCAACCCGGCGGCGGTACTTATTTTTGGTTCT‑CAGTTGGGTGAGAAAAATCACCCGATACTCGATAAAACaa > 2:757732/1‑140 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 1:504276/140‑1 (MQ=255)
gCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTAT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtataa > 6:471057/1‑139 (MQ=255)
gttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGGTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 3:598719/139‑1 (MQ=255)
cTTGTGTGTCATGAGTATAATCAGCTCAAAGAAGGTGAATTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTGCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 8:745442/138‑1 (MQ=255)
cTTGGGTGTCATGAGTTTAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 6:549189/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 5:1015988/140‑1 (MQ=255)
ttGGGTGTCTTGAGTATAAGCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCGGGCGGCGTTAGTTATTTTTGGTTCT‑CATTTGGCTGATAAAACTCAACAGATACTCGAGAAAACTAATAtacct < 2:827490/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTAT‑CAGTTGGCTGATAAAACTAACCAGATAATAGAGAAAACAAAaataa > 8:290363/1‑137 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTGGTTGT‑CAATTGGCTGTTAAAACACAACAGATAATCGAGAAAACAAAAAaaccaac > 2:981680/1‑140 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTTTATTTTTGTTCT‑CACTTGGCTGAAAAAAAACACCACAAAAACAAGAAAACAAAaataaatac > 5:299300/1‑135 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGTGTTATTTTTGGTTAG‑AACTTTGCTGATAAAACTCACCAGCTACAGGACATAACAAATAtaccaac > 6:86875/1‑140 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTAT‑CAGTTGGCTGATAAAAATCACCAGATACTAGAGAAAACAAATAtacctacc > 7:759634/1‑138 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTTT‑AAGTTGTCTGAGAAAACTAACCACAAACAAGTGAAAAAAAAAAAACCTAACggtt > 3:355902/1‑137 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGtt > 4:176174/1‑81 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGtt < 3:176174/81‑1 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTTGGTCG‑CACTTGGGTGATAAAAAGGACCATATTCAAGAGAAAACCAATATACCGACCGTTTAc > 2:343293/1‑140 (MQ=255)
taGTATTATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCTGCGGAGTTAGTTATTTTTGGTTCT‑CAGTTGGCTTATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGt < 5:915632/139‑1 (MQ=255)
aTCAGCTCAACGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTGCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTATCGTTGTCGGt < 4:1026834/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 3:445758/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 1:730662/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 3:980772/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 4:201535/140‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTc < 5:1020980/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTGATTTTTGGTTGT‑CCGTATGGGGATTTAACACACCAGATACTCGAGCAAACAAAAATACCGAACCTTAAAGGTGTggggg > 7:284817/1‑136 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCGTCATCAAGGCAACCCGGCGGCGTTAGTTTTTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTTTCGGtt < 7:673936/138‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTGT‑GAGTTGGGTGTTAAAACTGACCAGATACTCGGGCAAACAAATAATCCTACCGTTAACGTTGTCgggtgcc > 3:1041340/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTGGGTCG‑CAGTTGGCTGATTAAACTAACCAGATACGGGAGAAAACAAATATACCTTCCGTTTACGTTGTCgggtgcc > 4:230883/1‑135 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTTTTTTTTGGTGT‑CAGTTGGGGGCTAAAAAAAACCAGCTAAGCGAGAAAAAAAAAATTACAACCGGTTAAGGTGTGGGTTaccc > 1:590581/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTTTTTTTTGTTGT‑CAGTTTGGTGATTAAAATAACCAGATAAGACCGAAAACAAATATAACAAACGTTTACGTTTTCGGTTcacc > 2:787434/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGAGTTATTTTTGGTTCT‑CAGTTGGCTGATTAAACTCACCCTATAGTCCAGAAAACAAATAAACCAACACTAAACGTGGTCGGGTcccc > 6:845172/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGGTTTTTTTGGGTCT‑CAGGTGGCTGATAAATCGGCCCAGATACTCGAGAAAACCAATATAGCTACAGTTAACGTGGTCGGGTaccc > 2:883687/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTATTATTTTTTTGTGT‑AAGTTGGGTGATATAACGCACCAGATACTCGAGAAAAACAATATACCTACCGGTTACGTTGTGGGGTgccc > 4:732827/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGTTGT‑CAGTTGGCTGCTAAAACTCACCAGATACACCAGTAAACAAATATACCTACCGGTAAAGTTGTCGGTTgccc > 1:254635/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAAACCGGCGGAGTGTTTTTTATTTGGGTGT‑GAGTGTGCGGATAAAAAGAACAAAATACTGTGCAAAACAAATATAAATACCATTAACGGTGTCGGTTgccc > 4:992479/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGTTGT‑CAGTTGGGGGGTTAAACTACACAGGTTATCGAGAAAACAAATATAACAACCGGTTAAGTTTTGGGTTgcc > 8:37139/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTGGTTAT‑CAGTTGGGGGATAAAAATCCACAGCTACTCGAGAAAACAAATATAACAAACGGTAAAGTTGTAGGTTgcc > 7:184335/1‑138 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGATCGTATTTTTTGTTGT‑CAGATTGGTGATAAAACTCCCCCTATACGCGAGAAAAAAAAAATAACAACCCTTAAGCTTGACGGTTccccc > 4:292437/1‑139 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCAGGCGGCGTTAGTTATTTTTGGTTAA‑CAGTTGGCTGATAAAACTCACCAGATACACGAGAAAACCAATATACCAACCGTTAACGGTGTCGGTTccccg > 4:381296/1‑139 (MQ=255)
tCAAAGAAGATGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTTGGTAT‑CAGTTGGCGGATAAAACGCACCAGATACACGAGAAAACAAATAAAACAACCGTTAACGATGTGGGTTgcc > 7:785411/1‑138 (MQ=255)
atagacgCTGAAATTCTGATGACGCTTCTTCACGGCAACCCGGCGGCGTTAGTTATTTTTGGGTCT‑CAGTTGGCTGATAAAAGTCACGAGATCCTCGAGACAACAAATATAGCTCCGGTTAACGTTGTCGGTGCCCCt < 8:326149/136‑1 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTGT‑GAGTTTGCTGATAAAACTCACCAGATACAGGAGAAAACAAATATACCAACCGTTTACGTTGTCGGTTCCCCTTTCAGTGCg > 4:999928/1‑140 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 7:60831/138‑1 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGTTGG‑AAGTTTGCGGATTAAAAGCCCCAGATACTCGAGGAAACAAAAATACCAACCGTTTACGTTTTCGGTTACCCTTTGAGTCCgggg > 2:815584/1‑138 (MQ=255)
aagCTTATTCAAGGCAACCAGGCGGCGGTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACAAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 1:858067/138‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTAGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaaa < 5:235640/140‑1 (MQ=255)
aCCTGGCGGCGTTAGTTATTTTTGGTTAT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACCTTGTCGGTTCCCCTTTAAGTCCGGCTCAAAATACCATCGAAACAGCAtttttt > 1:781296/1‑140 (MQ=255)
aCCCGGCGGCGTTAGTTTTTTTTGGTTGT‑CAGTTGGCTGTTAAAACAGACCACGTACGCGAGGAAACAAATATACCTACCGGTAACGGTGTCGGGTCCCCGTTAAGTCCGGGGCAAATTACCATCCAAACAGCAtatttt > 6:948092/1‑140 (MQ=255)
cccTGCGGCGTTAGTTTTTTTTTGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACATATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 2:988463/140‑1 (MQ=255)
cccGTCGGCTTTAGTTATTTTTTGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 6:157694/140‑1 (MQ=255)
cccGGCGGAGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGAGAAACCTCAACAGATACTCGAGAAAACAAATCTACCTACCGTTATCGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCCTCGAAACAGCAttttt < 7:612480/138‑1 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaaa < 7:989096/114‑1 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCaaa > 8:989096/1‑114 (MQ=255)
gctgcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAAATACCTACCGTTAACGGTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:16284/137‑1 (MQ=255)
gcggggTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAACCTCACCATATACTCGAGAAAAGAAATAAACCTACCGTTAACGTTGTCGGTTCACCTTTCTGTCCGGCTCAAATTACCATCGTAACAGCATTTTTTGaa < 7:489033/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTTGCTGATAAAACTCACCAGATACTCGATAAAACAAATATACCTACCGTTAACGGTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATAGAAACAGCATTTTTTGAAGc < 3:611995/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCTCCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:346899/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCCCCAGCTACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 8:852545/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATCCCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:259838/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:794892/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:932980/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:6164/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:752478/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:765254/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTGCT‑CAGATGTCTGATACAACTCTCCAGATTGTGGAGACATCAAATATACCTACCGTTAACGTCGTCGGGTCCCCTTTCAGTGCGGCTCAAATTTCCATCGAAACCGCATTTTTTGaatc < 5:968161/140‑3 (MQ=255)
gcggcgTTAGTTATTTTAGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCTGTTCGCCTTTCAGTCCGGCTCAAATTACCATCGAAACATCATTTTTTGAAGc < 6:614234/140‑1 (MQ=255)
gcggcgTTAGTGATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 6:889022/140‑1 (MQ=255)
gcggcgGTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:513502/140‑1 (MQ=255)
ggcgTTAGTTATTTTTGGATCT‑CATTTGTCTGATAAAACTCACCAGATACTAGAGAAATCAAATATACCTACCGTTAACGTTGTCGTTTCCCCGTTCTGTCCTGCTCAACTTACGATCTAAACAGCATTTTTTGAAGc < 8:470859/138‑1 (MQ=255)
ttaTTTTTGGTGAT‑CAGTTGGCTGATAAAACTCAACAGATAATCGAGAAAACAAATATACCTATCGTTAACGTTGTCGGTTCACCTTTCAGTCGGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATaaa < 2:681393/140‑1 (MQ=255)
ttttGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGAAGGTTCCCCTTTCAGTCCGGCACAAATTACCATCGAAACAGCAATTTTTGAAGCATCACAAAAACTGa > 6:2441/1‑140 (MQ=255)
tttGGTTCT‑CAGTTGGCTGATAAAACTCACGAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTg < 7:200946/138‑1 (MQ=255)
tttGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAc < 2:183814/140‑1 (MQ=255)
tttGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAc < 6:955551/140‑1 (MQ=255)
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TTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCT‑CAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCG > NZ_CP022686/3797356‑3797631
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
