Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,493 |
G→T |
15.6% |
G134C (GGT→TGT) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,493 | 0 | G | T | 15.6%
| 221.1
/ 12.0
| 112 | G134C (GGT→TGT) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (29/63); new base T (18/2); total (47/65) |
| Fisher's exact test for biased strand distribution p-value = 1.53e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
CTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCGA > NZ_CP022686/3797354‑3797632
|
cTTTCTGCAGGCGTTGCAGCATGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCACAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTg < 4:211376/140‑1 (MQ=255)
ttATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGt < 3:475468/140‑1 (MQ=255)
ttATGCAGGCGTTGCAGCAGGTGCTTAATAAAAATGAAATCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGt < 3:863364/140‑1 (MQ=255)
tGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCTTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAGCCCGGCGGC‑GGTTGTTTTTTTTgtgtgt > 7:685166/1‑135 (MQ=255)
gCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GTTTTTTTTTTTTgggtg > 5:906541/1‑135 (MQ=255)
cAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGttat > 6:626971/1‑136 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATTTTTTTTTTGTTATCAGtt > 3:389254/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATTTATTTTTGGTTGTCAGtt > 3:7062/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGTTCTCAGtt > 1:570276/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTGTCAGtt > 8:398081/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTATGTATTTTTTGttgacattt > 7:225973/1‑133 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCTGC‑GTTTGTTATTTTTGGGTCTGAGt > 5:741158/1‑138 (MQ=255)
cGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATGTATTTTTGGTTCGCAtttt > 4:783529/1‑139 (MQ=255)
gTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTTGTTCACAgat > 5:444319/1‑136 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGc > 1:455295/1‑140 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGc < 4:524763/140‑1 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCGCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGc < 7:511951/140‑1 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTTGTTATCAATTGGGGGATaaaaa > 3:175408/1‑139 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGAGTTTTTTTTGGTGCTCAGTTGGCTGATAAAAc > 7:314469/1‑140 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGATGGTTTTTTTGGTTCTCAGATGGGTGTTGAAAATc > 4:125401/1‑140 (MQ=255)
cTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTTGTTCTCAGTTGGGTGATTAAACTcc > 1:162742/1‑139 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTATGGAGTTTTTGGTGTGAGTTGGGTGCTaaaaaaaacc > 3:28589/1‑134 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTTGTTTAGAGTTGGGTGGTAAAACTccac > 1:777626/1‑137 (MQ=255)
aataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCa > 7:699983/1‑140 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTTTTATTTTTGGGTCTCATTTGGAGTATTAAACGAACCACATAc > 6:46185/1‑138 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGTTCTCATTTGGCGGATAAAACACACCAGCTACTc > 4:736970/1‑140 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACACGGCGGC‑GTTAGTTATTTTTGGTTCTAAGTTTGCTTATAAAACTCACCAGATAATc > 3:394613/1‑140 (MQ=255)
ttCCCGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:102932/140‑1 (MQ=255)
ttCCAGCTACTGCTTGTGTGTCATTAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:71887/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 6:805783/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:699983/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:447889/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 3:719660/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 2:455295/140‑1 (MQ=255)
ttCCAGCTACTGCATGGGTGTCATGAGTATAATCCTCTCAAAGAATCTGAAATTCTTATGACGATTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 5:346795/138‑1 (MQ=255)
taccAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGTCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 6:761780/136‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 2:665572/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaaa < 4:876433/140‑1 (MQ=255)
tACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTTATTATTTTTTGTTCTAATTTGGGGGATAAAACACACCACAAACACCAGAAAACaa > 5:887554/1‑138 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 6:760457/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 3:736970/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 3:364826/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 3:154471/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTATAATTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAAAtacc > 4:333100/1‑140 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 6:527475/138‑1 (MQ=255)
cTTGGGTGTAATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACTCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 4:841204/140‑1 (MQ=255)
cTTGGGGGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACTCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 5:198007/138‑1 (MQ=255)
tGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTATTTTTGTTTGTAAGTTGGCTGATAAAACTCACCAGATAATCGAGAAAACAAATAtaacta > 8:318902/1‑140 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGGGGATTAAACTAACCAGGTAATAGCTAAAACAAATAtaactac > 7:498628/1‑140 (MQ=255)
gtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCg < 5:474526/138‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTGATTTTTTTTTGGTTATGAGTTGGCGGGTAAAACTCACCAAATAAAAGAGAAAACAAAAAtaacaacccgtt > 3:82196/1‑136 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTATTTTTGGTTCTGATTTGGCTGATAAAAATAACCAGAAAATCGAGAAAACAAATATACCTAACggttaa > 3:421759/1‑135 (MQ=255)
gAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGGTGTTATTTTTTGTTGTGAGTTGGCGGGTTAAACTAAACACATACGACAGCAAAAAAATATAACTTCCGGTata > 5:50325/1‑136 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGTC‑GTTAGTTATTTTTTGTTATCAGTTGGCTGATAAAACTCACCATATACTCGAGAAAACAAATATACCTACCGTTAACGtt < 2:264916/140‑1 (MQ=255)
attaTCAGCTCCAAGAAGGTGAATTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGG‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTTCCGTTAACGTTGTc < 8:302871/137‑1 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTTGTTTTTTTTTGGTATGACGTGGGGGATAAAAAAACCCAGAAAATCGAGAAAACAAAAATACCAAACCTTAAAGtttt > 5:647948/1‑136 (MQ=255)
aTCAGCTCAAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGt < 2:543082/140‑1 (MQ=255)
aTCAGCTCAAAGAAGCTGAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTCATTTTGGTGCTCAGTTGGCTGATAAAACTCACCAGAGACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCg < 6:49040/138‑1 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 7:581767/140‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTc < 4:579023/140‑1 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTc < 2:144973/140‑1 (MQ=255)
aGCTCAACGAAGCTGAAATTCTGATGACGCTGCTTAAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAGCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTcc < 1:524595/140‑1 (MQ=255)
aGCTCAAAGATGCTGAAATTCTGATGACGCTTCTTCAAGGCAAGCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTAGCGTTAACGTTGTCGGTTcc < 7:163463/140‑1 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCTAGGCAACACGGCGGC‑GTGAGTTATTTTTGGGGCTCAGGTGTGTGATAAAACTAACCAGAAAATCGACAACAAAAATATAAATAACGTTTACGTATTAGGTTcgc > 8:130227/1‑138 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTGTGAGTTGGGTGTTAAAACTCACCAGATACTCGAGAAAACAAATATACCAAACGGTAAAGTTGTGGGGTccc > 2:952/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTTGTTTGGAGGTTGGGT‑ATTAAAATCACCCCCTACTCGCGAAAACAAAAAAAACTACAGTTTAAGGTGTAGGTTgccc > 7:20776/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGTTCTCAGTTGGGTGTTAAAAATCGACAGAGACTCGAGAAAACAAATATACCTACCGGTAACGTGGTCGGGTcccc > 4:519712/1‑140 (MQ=255)
cgCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTc < 1:809996/139‑1 (MQ=255)
agCTGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAg < 6:661862/138‑1 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:115876/94‑1 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa > 2:115876/1‑94 (MQ=255)
tGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 8:720502/140‑1 (MQ=255)
tGAAATTCTGATGACGATTCTTCAATGCAACCCGGCGGC‑GGTAGTTATTTTTTGTTCTCAGTGGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCgg < 8:720499/140‑1 (MQ=255)
gatgaCGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTTTTTTTGGTTATCAGTTGGCTGTTAAAACTCACCAGATACTCGAGAAAACAAATATAACTAACGTTAACGTTTTGGGTTCCCCGTTGAGTCACGCTCAAATTa > 8:644181/1‑140 (MQ=255)
atgaCGCTTCTTCAAGGCAACCCGGCGGC‑GTGATGTTTTTTTGGTTGTGAGTTGGGTGCTAAAACGCACAAGATACAGGTGAAAAAAAAAATAAAATCCCTTAACGTTGGGGGGTGCCCTTTCAGGCCGGGGCaaagtgc > 4:200310/1‑136 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGCGGA‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 2:936132/140‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATTTACCTACCGTTAACGTTGTCGGTTCCCCTTTCTGTCCGGCTCAAATTACCATCGaaa < 7:194279/140‑1 (MQ=255)
ttcAAGGCAACCCGGCGGC‑GTTTTTTATTTTTTGTTATAAGTTGTCTGATAAAACTCACCCGATAATCGAGAAAAAAAATATAAATAACGTTAAAGTTTTAGGTTAACCTATAAGTACGGCTCAAATTAAAATAGAAACa > 4:219320/1‑140 (MQ=255)
ggCAACCCGGCGGC‑GTTATTTATTTTTTGTTTTCAATTTGCTTATAAAACACACCAGATAAAAGAGAAAACAAAAATACATAAAGTTAACCTTGTCGGTTGACCAATAAATACCGCGCAAATTACCAACaaaaaaacaat > 2:49976/1‑133 (MQ=255)
aCCCGGCGGC‑GTTAGTTATTTTTTGTTATCAGTTGGCTGATAAAACTCACCACATACTCCAGAAAAAAAATATAACAACCCGTAACGTAGTCGGGTGGCCATTCAGTCCGGCTACAAATACCCAAGAAAAAGCAattttt > 4:123758/1‑140 (MQ=255)
cccGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 2:113899/140‑1 (MQ=255)
cccGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 7:336395/140‑1 (MQ=255)
cccGGCGGC‑GTTAGGTATTTTTGGTTCTCAGTTGGGTGATAAAACGCACCCGCAACTCGAGCAAACAAAAATACCTACCGTGAACGTTGTCGGTTGCCCATTAAGTACGGCTCAAATTACCCTAGAAACAGCCttttttt > 4:715725/1‑139 (MQ=255)
gcggc‑gTTAGTTATTTTTGTTTCTCTGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACATATATACCTTCCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAAATACCATCGAAACATCATTTTTTGAAGc < 7:624666/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 5:626971/138‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:841482/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:225973/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTACCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:593798/140‑1 (MQ=255)
gcggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGAAAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:370046/140‑1 (MQ=255)
gggc‑tTTAGTTA‑TTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 2:777884/139‑1 (MQ=255)
cggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCa < 7:625992/140‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCAt < 4:644638/140‑1 (MQ=255)
ggc‑gTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAAACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 6:50325/138‑1 (MQ=255)
ggc‑gGTAGGTATTTTTGGTTCTCAGATGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCATTTAAGTCCGGCTCAACTTACCATCGAAACAGCATTTTTTGAAGCAt < 7:208178/140‑1 (MQ=255)
gttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGc < 2:692083/119‑1 (MQ=255)
ttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCAACAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCTGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATaaa < 3:468918/140‑1 (MQ=255)
ttttGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGa > 1:188502/1‑140 (MQ=255)
tttGGTTCTCAGTTGGCTGATAAAACTCTCCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTggc < 3:76858/140‑3 (MQ=255)
tttGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAc < 3:917382/140‑1 (MQ=255)
ggTTCTCAGTTGGCTTATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCGa < 3:43526/140‑1 (MQ=255)
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CTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCGA > NZ_CP022686/3797354‑3797632
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
