Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F2 I0 R1
|
193 |
6708.0 |
8620653 |
98.5% |
8491343 |
136.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,493 |
G→T |
15.4% |
G134C (GGT→TGT) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,493 | 0 | G | T | 15.4%
| 234.8
/ 6.3
| 121 | G134C (GGT→TGT) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (35/63); new base T (20/3); total (55/66) |
| Fisher's exact test for biased strand distribution p-value = 1.06e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 123 total aligned reads displayed.
TGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCGA > NZ_CP022686/3797359‑3797632
|
tGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTAAAGCTACTGATTGGGTGTAATGAGTATAATAAGCTCAAACAAGCTCAAAATCTTATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTATGTTTTTTTTgttat > 3:876937/1‑136 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTTCTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAggt > 4:745102/1‑138 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGCAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTGATTTTTGGTTCTCAGtt > 7:740154/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GGGT‑GTTTTTTTTGTTTATCAGtt > 7:618219/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTTTTTTTGGttgtgatgt > 5:954325/1‑133 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTTGTTATCAGtt > 3:522558/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGtt < 2:863238/140‑1 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTAAGtt > 3:530641/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑TTTTTTTTTTGTGCTCAGtt > 2:914623/1‑140 (MQ=255)
tCGTTGCAGCAGGAGCTTAATAAAAATGAATACCAGCTACTGCTAGTGTGTCATGAGTATAATCAGCTAATAGAAGCAGAAATTCTGATGCCGCGTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTAAGtt > 6:781416/1‑140 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTGTCAGTTggg > 4:1041184/1‑139 (MQ=255)
ttGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCGTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGc < 8:439676/140‑1 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTTTTTTTGTTTGTAACTTGGGTg > 3:1034069/1‑140 (MQ=255)
ggTTCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGACGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 4:191208/140‑1 (MQ=255)
ggTGCTTAATAAATATGAATTCCAGCTACTGCTTTGGTGTCATGAGTATAATCAGCTAAAAGCAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATaaaa < 3:71456/140‑1 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTGTCAGTTTGCTGATaaaa > 2:5946/1‑140 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGTA‑GTTATTTTTGGTTATCAGTTGGCTGATaaaaa > 1:165615/1‑139 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTCTCAGTTGGCTGATAAAAc > 4:816476/1‑140 (MQ=255)
tGCTTAATAAAAATGAATTCCATCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 3:747169/140‑1 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACTCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACt < 2:585541/140‑1 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑GTTTTTTTTTGTTGTGAGTTGGGTGATTAAAcaaccc > 1:443908/1‑135 (MQ=255)
taataaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTTGTTCTCAGTTGGGTGATAAAACTCAc‑c > 3:41457/1‑140 (MQ=255)
aaaTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TGTATTTTTTGTTATAATGTGGCTGATAAAACTAAC‑CAGATaa > 6:698882/1‑139 (MQ=255)
aTGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATAcac > 4:649688/1‑138 (MQ=255)
ttCCAGCTACTGCTTGGTGGGAATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGaa < 8:307464/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGaa < 3:714584/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGaa < 4:371639/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGaa < 6:31179/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGaa < 6:261842/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGTGTGTCAGTTGGCTGATAAAACGCCC‑ACGATACACGACaa > 2:262130/1‑140 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTGTCAGTTGGGTGAGAAAACTCAC‑CAGATACTAGAGaa > 6:402152/1‑140 (MQ=255)
ttCCAGCTAATGCGTGGGGGTCATTTTTAAAATCACCCAAAAGTATCTGTAATTCTGTTGCCGCTTCTTCAAGGGAACCCGGCGGC‑GTTT‑GGTTTTTTTTGGTCTCAGTTGGGTGTTTAAACTCAC‑CAGATACTCGAGaa < 4:585664/140‑1 (MQ=255)
accAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTAGGCTGATAAAACTCAC‑CAGATACTCGAGaaa < 3:1023336/139‑1 (MQ=255)
gCTACTGCTTGGGTGTCATGAGTATTATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CA‑ATACTCGAGAAAACaaa < 5:332195/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATACTCAGCTCAAAGAAGCGTAAATTCTGCTGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACaaa < 2:915549/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACaaa < 5:178791/140‑1 (MQ=255)
cTTGGGTTGCATGAGTATAATCAGGTCAAAGTAGCTGTAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGGTGGCTGATAAAACTCTC‑CAGATACTCGAGAAAACAAATAtacc < 3:513470/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATAtacc < 6:137278/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATAtacc < 1:1039600/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTGCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTTGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATAtacc < 4:69160/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATAtacct < 6:703004/140‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATAtacct < 3:1045401/140‑1 (MQ=255)
ttGGGTGTCAAGAGTATAATCAGCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATAtacct < 7:971651/140‑1 (MQ=255)
tGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTATCAGTTGTCTGATAAAACTAAC‑AAGATACTCAAGAAAACAAAtataacaa > 6:1058088/1‑136 (MQ=255)
gggTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTTTTTTTTGTTATCAGTTGGGGGAT‑AAACAAACACAGATAATAGCGAAAACAAAAAtaactaa > 7:258801/1‑139 (MQ=255)
tgtCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑t < 3:103236/140‑1 (MQ=255)
aGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTGGTTGTCAGGTGGGGGATAAAACTCAC‑CACATACACGAGAAAACAAATATAACTA‑CCG‑GTAACGtt > 1:1095284/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGt < 5:304785/140‑1 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GGTTTTTTTGGTTATCAGTTTGGGGCTAAAACTCAA‑CAGATACTCGAGAAAACAAAAATACCAA‑ACG‑TTAAAGATGt > 4:707452/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTT‑TTTTTTTTTGGGTGTGAGTTTGGGGTTTAAAATCAC‑CAGCTACTAGGCAAACCAAATATTACGA‑ACG‑TTGACGgtgt > 1:416489/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GGTTTTTTTGGTTGGGAGTTGGCTGATAAAAATCAC‑CAGATACTGGAGAAAACAAATATACCTA‑CCG‑TTAACGTTgg > 6:1003361/1‑139 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGGT‑GTGATTTTTTGGTGGCAGTTTGGGGAGTAAACTAAC‑CAGAGTCGCGTGAAAAAAAATATAACTA‑CCC‑GTAAGGtttt > 8:691943/1‑138 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGCCGCTTCTTCAAGGCAACCCGGCGGC‑GGGA‑GTTATTTTTGGTTTGAAGGTGGCGGCGAAAACACAC‑CCGCAAGAAGAGCAAACAAATAAACCAA‑CCC‑TGAACGTTGTggg > 2:13861/1‑140 (MQ=255)
aaTCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCCACCCGGCGGC‑TGTA‑GTTATTTTTGGTTGTCATGTGGCTGCTAAAAATAAC‑CAGATAATCCAGCAAACAAATAAAACTA‑ACG‑TTTACggtttagg > 4:9561/1‑133 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTTTTTTTGGGTGTCAGTTGGGGGGTAAAAATCAC‑CAGATTCACGGGAAAACAAATATTCCTA‑ACG‑TGAACGTTGTAGGtt > 1:570173/1‑140 (MQ=255)
cAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTc < 2:290766/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GGTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTcc < 4:491765/140‑1 (MQ=255)
gCTCAAAGAAGCTTAAATTCTGATGACGCTTCTTCAAGGCAACCCTGAGGC‑GGTT‑GTTATTTTTTGGTATCATTTGGGTGCTTAAACTCAC‑CAGAGACTAGAGAAAAAAAATATTCATA‑GCT‑TTAAAGTTGTAGGttaac > 8:55355/1‑137 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTTTTTTTTGTTGTAAGTTGGGGGGTTAAAATCAC‑CAGAGACACGAGCAAAAAAATATAACAA‑CCC‑TTTACGGTGTAgggtgcc > 3:363093/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTTGTTTTCAGTTGGGTGGTTAAAAAGAC‑CCGATACAAGCTAAAACAAAAATAACTA‑CCG‑GTAAAGTTGTCgggtgcc > 3:226427/1‑135 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTTTTTTTGGTTCGCAGTTGGGGGATAAAACTCCC‑CCGGTAAGAGAGAAAACAAATATACCGA‑CCG‑GTTAAGTTTTGGGTTacc > 7:184591/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GGTA‑GTTATTTTTGGGTATCAGTTGGGTGATAAAACTCGC‑CCGATACGGGGGAAAACAAATATACCGA‑CCC‑TTAACGTTGTCGGTTccc > 7:181772/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGAGGC‑GGTA‑GGTTTTTTTGGGTCGCAGTTGGGGGATAAAACTAAC‑CAGATTCTCGAGAAAACAAAAATAACAT‑CCG‑TTAAAGGTGTCGGTTacc > 8:372316/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGCGGTTT‑GTT‑TTTTTTGTTGGCAGTTGGGGGATAAAACTACC‑CCGAAACTCGGGAAAACAAATATACCAA‑CCGATTACCGTT‑TCGGTTcccc > 8:151004/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTTTTTTTTGTTGTCAGGTGGCTGTAAAAAATGAC‑CCGATACAAGCGAAAACAAAAATAACAA‑CCC‑TTAACGGTGTAGGGTgccc > 5:474212/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑TTTATTTTTTTTTTTCATTTGGGGTATTAAAAACAC‑CAGAAAAGAGAGAAAACAAAAAAAACTA‑ACC‑TTTACTTTGTAGGTTgcccg > 7:574164/1‑139 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTT‑GTTATTTTTGGTTGTCAGTTGGCTGATAAAAATAAC‑CAGATACTAGAGAAAACAAATATAACTA‑CCG‑TTTACGTTGTCGGTTCCCCt > 7:840846/1‑140 (MQ=255)
agaagCTGAAATTCTGATGACGCTTCTTCAAGGAAACCAGGCGGC‑GTTA‑TTTATTTTTTGTTATAAATTGGGAGAAAAAAAACAA‑CAGATACTACAGCAAACAAATATACCAA‑CCG‑TTAAAGTTGTAGGGTCACCattaa > 6:597955/1‑138 (MQ=255)
aagCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑ATAACGTTGTCGGTTCCCCTTTCAGt < 3:538886/140‑1 (MQ=255)
agCTGAAATTCTGATGACTCTTCTTCAAGGCAACACTGCGGA‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAAATCAC‑CAGATACTAGAGAAAACAAATATACCTA‑CAG‑TTAACGTTGTCGGTTCCCCTTTCAGTc < 1:240592/140‑1 (MQ=255)
agCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTc < 3:694255/140‑1 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCACCCCGGCGGC‑GGTA‑GTTATTTTTGGTTCTCAGTTGGGGGATAAAACTCAC‑CCGATACCCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTGGGTTCCCCGTTCAGGccc > 8:591602/1‑139 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCt < 3:356379/140‑1 (MQ=255)
tgatgaCTCTTCTTCAAGGCAACCCTGCGGC‑GTTA‑GTTATTTTTGGTTGTCAGTTGGCTGATAAAAGTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCAGGCTCAAAtt < 1:1075200/140‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑TTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTAGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAAtt < 6:576816/140‑1 (MQ=255)
tgatgaCGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTCATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAAtt < 2:139870/140‑1 (MQ=255)
aCGCTTCTTCAAGGCAACCCGGAGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCAt < 5:404755/140‑1 (MQ=255)
tcttcAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCGCAGATGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTATCAGTCCGGCTCAAATTACCATCGaaa < 2:795064/140‑1 (MQ=255)
ggCAACCCGGCGGC‑GTTA‑GTTTTTTTTGGGTGTCAGTTGGCGGATAAAACACAC‑CAGATAAGCGAGAAAACAAATATACCAA‑CCG‑TTAAAGGTGTAGGGTGCCCGTTGAGTCCCGCGCAAATTAACATCGAAACAGCAtt > 2:418408/1‑140 (MQ=255)
aCCCGGCGGC‑GTTA‑GTTATTTTTTGTTATCAGTTGGCGGATAAAACTCAC‑CAGATACACGAGAAAACAAAAATAACTA‑CCG‑TTTAAGTTTTCGGGTCCCCTTTCAGTCCGGCTCAAATTTACAAAGAAACAGCAattttt > 8:125782/1‑140 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCCGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTT‑CCG‑TTAACGGTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGTCACAGCATTTTTTGAAGc < 3:418025/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CATATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:611710/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 7:125782/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:392520/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:836447/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:554209/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:233906/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:631479/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:36834/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:589975/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:967695/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 4:85571/140‑1 (MQ=255)
gcggc‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑ACG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 3:231884/140‑1 (MQ=255)
cggc‑gTTA‑GGTATTTTTTGTTGTCAGTTGGCGGATAAAACTCAC‑CAGATACACGAGAAAACAAAAATAACAACCCG‑TTAA‑GTTGTCGGGTCCCCTTTCAGTCCGGCTCCAAATACCATAGCAACCACATTTTTTTAATCa > 3:219364/1‑140 (MQ=255)
c‑gTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATca < 2:1095284/140‑1 (MQ=255)
ggtta‑gttaTTTTTTGTTATAAGTTGGCTTATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCATTCAGTCCGGCTCAAATTACCATCGAATCATCATTTTTTGAAGCATca < 5:597955/139‑1 (MQ=255)
ttaTTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTATCGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATaaa < 3:443870/140‑1 (MQ=255)
ttttGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGa > 1:351542/1‑140 (MQ=255)
tttGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAc > 5:964671/1‑140 (MQ=255)
tGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGGTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTATTTGAAGCATCACATAAACTGACCg < 7:156746/140‑1 (MQ=255)
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TGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGC‑GTTA‑GTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAC‑CAGATACTCGAGAAAACAAATATACCTA‑CCG‑TTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGACCGA > NZ_CP022686/3797359‑3797632
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
