Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
3,797,493 |
G→T |
13.8% |
G134C (GGT→TGT) |
CIW80_RS19065 → |
LacI family DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 3,797,493 | 0 | G | T | 13.8%
| 362.3
/ 7.8
| 168 | G134C (GGT→TGT) | CIW80_RS19065 | LacI family DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (42/97); new base T (27/2); total (69/99) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 171 total aligned reads displayed.
CTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAC > NZ_CP022686/3797354‑3797629
|
cTTTATGCAGTCGGTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTg < 8:670888/140‑1 (MQ=255)
aaTGCAGTCGTTGAAGCAGTTGATTAATAAAAATGACTTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTgg < 4:713547/137‑1 (MQ=255)
cAGTCGTTTCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGAGTTAATTTTTGTtct > 3:646278/1‑138 (MQ=255)
cAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGttat > 4:320762/1‑136 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGGTCTCCGtt > 6:1004645/1‑140 (MQ=255)
tCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAATTATTTTTTGGTCTAAGtt > 1:657408/1‑140 (MQ=255)
gcagcaGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTTGTTCTCAGTTGGCTg > 8:301809/1‑140 (MQ=255)
agcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTg > 4:819344/1‑138 (MQ=255)
gcagGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATa < 2:74250/140‑1 (MQ=255)
agGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaaa > 6:467469/1‑140 (MQ=255)
agGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATAAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTTTTCTAATGTGGCGGATaaa > 5:909726/1‑140 (MQ=255)
ggTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATaa < 3:818431/138‑1 (MQ=255)
gTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGAAACCCGGCGGCGGTATTTATTTTTTGTTAGAAGTTGGCTGATaaaaa > 8:255887/1‑139 (MQ=255)
tGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAATAAGCTGATATTCTGATGACGCTTCTTCAAGGCAACCCGGAGGCGTTAGTTATTTTTGGTTCTCAGTTGTCTGATAAAACt < 1:196804/140‑1 (MQ=255)
gCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTGTTGTAATTTAGCTGATAAAACta > 6:281297/1‑139 (MQ=255)
cTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCa < 6:956697/140‑1 (MQ=255)
ttAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTATTTATTTTTTGTTGTGACTTGGCGGTTAAAAcac > 3:344779/1‑136 (MQ=255)
taataaAAATTAATTCAAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAcc < 2:1076397/140‑1 (MQ=255)
taaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 7:1218966/140‑1 (MQ=255)
taaAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGa < 1:1279105/140‑1 (MQ=255)
aaaTGAATTCCAGATACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTAAAGGCAGCCCGGCGTCTGTTGTTATTTTTGGTTCTCAGTTGGGTGAGAAAACTAAACCGATag > 2:810330/1‑139 (MQ=255)
aaTTACCGCTACAGCTTGGGAGTCATGAGTATCATCAGCTCACAGAAGCTGAAATTCTGATGACGCTTCTGCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCg < 3:34913/138‑1 (MQ=255)
ttCCAGCTACTTCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAGCAGATACTCGAGaa < 1:122802/140‑1 (MQ=255)
ttCCAGCTACTGCTTTGGTTTAATGAGTATAATCAGATCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGAGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:708055/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 4:1312790/138‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:949416/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 5:1055087/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 7:675538/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:704401/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 6:486839/140‑1 (MQ=255)
ttCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 8:490233/140‑1 (MQ=255)
ttCCAGCAACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaa < 1:1134635/140‑1 (MQ=255)
ttCCAGCAACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTATGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTATTTTTGGTTCTCAGTTGGCTTATAAAACTCACCAGATACTCGAGaa < 1:849705/140‑1 (MQ=255)
atCCAGCTACTGCTTGGTTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCATCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCgag < 4:534017/137‑1 (MQ=255)
caaggtACTGCTTGTGTTGCATGAGTATAATCAGCTCATAGAATATGAAATTCTGCTGACGCTTCTTCAAGGCAACCAGGATGCGGTATTTATTTTTGGTTCTCATTTGGCTGATAAAACTCACAAGTTACTCGAGaaaa < 6:772259/135‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGaaaa < 3:403805/138‑1 (MQ=255)
aGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCGGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 7:1240506/140‑1 (MQ=255)
cTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACa < 3:1199381/138‑1 (MQ=255)
tACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACaa < 4:114359/138‑1 (MQ=255)
gttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 2:916083/139‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCATCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:855469/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCACAGCAGCTGAAATTCTTATGACGCTTCTTCAAGGCAACCCGGCGTCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 8:548086/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAAtata < 3:975045/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacc < 8:372102/140‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAACAGATACTCGAGAAAACAAAtata < 4:529752/138‑1 (MQ=255)
cTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTATTTTTGGTTTTGAGTTTGGTGATAAAACTAACCACATACACGAGAAAACAAAaataac > 6:138837/1‑138 (MQ=255)
tttggTGGCATGAGTATAATCAGCTAAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCTTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtac < 3:641867/135‑1 (MQ=255)
ttGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATAtacct < 5:138837/140‑1 (MQ=255)
tCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTGGTTATAAGTTTGGTTAAAAAACTAAACCGAAAGTCGATAAAACAAATTTAACAAACGTTa > 1:772670/1‑140 (MQ=255)
aTGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTa > 4:782941/1‑138 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGGTTTGCGTTTGGGGATTAAACACCCCAGATACTCGGGAAAACAAAAATAACAACCGTTTACGgtgt > 7:242987/1‑140 (MQ=255)
tataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGGTGTTTTTTTTTGTTTTCAGGTTGCGGGTAAAAAACACCCCGTACGCGAGCAAAAAAAAAAAACTAACGGTAACGgtgt > 1:15781/1‑140 (MQ=255)
tataATCAGCTCAAAGAAACTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGt < 1:772739/140‑1 (MQ=255)
ataATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTTGTTCTCATTTGGCGGATAAAAATCGCCAGATAATCCAGAAAAAAAAAATACCTAACGGTAACGTTGtg > 7:824268/1‑139 (MQ=255)
taATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTGGTTCTCATTTGGGTGATAAAACTCACCAGGTACTCGAGAAAACAAAAATAACTACCCGTAACGTTGt > 3:861001/1‑138 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTTTTTTTTGGTAGTAGTTGGCGGGTTAAACTCAACAGATAATCCAGCAAAAAAATATAACTACCGTTAACGTTGTAGGtt > 7:1068381/1‑140 (MQ=255)
tCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGtt < 2:1346217/140‑1 (MQ=255)
aGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTAATTTTTGTTGTAAGTTGGCTGATAAAAATACCCAGATACAAGAGAAAACAAATATAACTACCGTTAACGTTGTAGGtt > 4:570640/1‑138 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGTGTGTGAGTTGGCTGTTAAAAATCACAAGAAACTCGAGAAAAAAAAATTAACTACCCGTTACGTTGTGGGTTgcc > 8:1225179/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTATCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGGTAACGTTGTCGGTTccc > 2:1105389/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTGAGTTTTTTTTGGTTGTCAGTTGGGTGATAAAACTCACCAGATACTCGAGAAAACAAATAAACCTAACGGTAACGTTGTGGGTTgcc > 2:166161/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGGTTTTTTTTGTTCTCACTGGGCGGGTTTAACGGACCACATACTCGAGAAAACAAATAAAACAAACCTTAACGTTGTAGGTTacc > 6:547707/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTTTTTTTGGGTCACAGTTGGCGGATAAAACTCACCAGAGAAGCGGGAAAACAAAAATACCGACCCGTAACGGTGTGGGTTgcc > 2:58714/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCCGTTGGCTGAGAACACGCAGCAGATACTCGAGCAAAAACATGTACCTACCGTGAACGTTTTGGGTTccc > 7:632894/1‑140 (MQ=255)
gCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCGCAGTTGGGGGATTAAACGCACCAGATTCTCGAGAAAACAAATATTCCTACCGTTAAAGTTGTCGGTTccc > 7:1033119/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTGTTATTTTTGGTTATAAAGTGGCTGATAAAAATAACCAGATAAACGAGCAAACAAATATACCTCACCTTAACGGTGTAGGTTgccc > 8:778833/1‑140 (MQ=255)
cTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTAGGTATTTTTGGTTCTGACATGGCGGATTAAAAAAAACAGATACTCCTAAAAACAAAAAATCCTACCGGAAACGTTGTAGGTTcccc > 6:1288448/1‑140 (MQ=255)
tCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTATTTATTTTTGGGTCGCACTTGGGGGGTTAAACCGACCAGATACGAGAGAAACAAAATATACCGACCGGTAACGTTGTCGGTTacc > 3:944187/1‑138 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTATGAGGTGGCGGTTAAAAAACACCATATACAAGAGAAAACAAATAAACCAACCCTTAAAGTTGTGGGttgacc > 3:8124/1‑134 (MQ=255)
cAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTATCCGTTTGGTGTTAAAAATGCCCCGATACTCGTGAAAACAAATATAACTACCGTTAAAGGTGTGGGGTgccc > 3:843047/1‑138 (MQ=255)
aagCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTGTTTTTTTTGGTTATAAGTTTGGGGGTAAAAATAACCACATAAGAGGGAAAACAAAAATAACTACCGGTAACGGTGTCGGTTGCCCattga > 3:711955/1‑136 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTTGTTCTCAGTTTGCTTATAAAACACACCAGCAACAACAGAAAACAAATATACCAACCGTGAACGTTTGAGGTTAACCATTCAGTccc > 8:1080398/1‑139 (MQ=255)
cTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGGTTTTTTTTTTTTGTTATGAGTTGGCGGATAAAACTAACCAGATACTCGAGAAAACAAATATACCTAACGGTAAAGTTGTCGGTTCCCCTTTAAGTCCg > 1:1010221/1‑140 (MQ=255)
aaaTTCTGTTGTCGCTTCTTGATGGCATTCCGGCTGGGTTTGTTTTTTTTGGTTCTCAGTTGGCTGATAATACTCATGTGATTCTCGAGAAATCAAATATACGTAGCGTTTATGATGTGGGTTCCACTTTGAGTCCGGCt < 1:199295/140‑1 (MQ=255)
aaaTTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCt < 7:509118/140‑1 (MQ=255)
gCTTCTTCAAGGCAACCCGGCGGCGTTTTTTATTTTTTGTTATCAGTTTGCTGATAAAACAAACCACATACGAGAGAAAAAAAATAAACCAACCCGTAAAGTTGTAGGTTACCCGTTCCGTCCCGCGCAAATTACAAtag > 6:1091988/1‑138 (MQ=255)
tcttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTTGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGaaa < 7:793153/140‑1 (MQ=255)
cttcAAGGCAACCCGGCGGCGTTAGTTATTTTTTGTTGTCAGTTGGCTGATAAAACTCACCAGCTACTCGAGAAAACAAAAATACCAACCCTTAAAGTTGTCTTTTCCCCTTTTAGTCCGGGTAAAATTAACATCGaaaa > 6:991435/1‑139 (MQ=255)
ttcAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACa < 5:502536/140‑1 (MQ=255)
cAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGc < 8:685479/140‑1 (MQ=255)
cAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAAATCACCAGATACTCGAGAAAACAAATATACCTACCGTTAAAGTTGTCGGTTCCCCTTTCAGTCCGGCTAAAATTACCATAGaaaaa > 4:514309/1‑136 (MQ=255)
aaGGCAACCCGGCGGCGGTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAg < 3:782941/138‑1 (MQ=255)
cAACCCGGCGGCGTTATTTATTTTTGGTTGTGAGTTGGGTGATAAAACTCACCAGATAATCGAGAAAACAAATATACCTACCGTTAACGGTGTCGGGTGCCCGTTCAGTACGGCTCAAATTACCAAAGCAACAGCaat > 4:630351/1‑136 (MQ=255)
aCCCGGCGGCGGTAGTTATTTTTGGTTGTCAGTTGGCTGATAAAACTCACCAGATAATCGAGAAAACAAATATACATACCGGTTACGTTGTCGGTTCCCCGTTGAGTACGGCTCAAAATACCATCGAAACCGCAtttttt > 8:1252371/1‑140 (MQ=255)
cccGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTg < 2:554736/140‑1 (MQ=255)
ccGGCGGCGTGAGTTATTTTATGTTCTGAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATCTAACTACCGTTAACGTTGTCGGTTCCCCATTCTGTGCGGCTCAAATTACCATCGAAACAGCATTTTTTGa < 1:1100521/140‑1 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 7:301809/140‑1 (MQ=255)
cggcggCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCATTCAGTCCGGCTCAAATTTACATCGAAACAGCAttttttt > 4:971272/1‑137 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCTGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGATACAGCATTTTTTGAAGc < 7:593691/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCAGCAGATACTCGAGAAAACAAATATACCTACAGTTAACGTTGTCGGTTCGCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 1:283274/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTTCCATCGAAACAGCATTTTTTGaa < 3:971272/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 4:23793/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGaa < 4:291258/138‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 2:992054/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:281297/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 5:25681/140‑1 (MQ=255)
gcggcgTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:885801/140‑1 (MQ=255)
gcggcgTTAGTTATTTATGGTGCTCAGTTGGCTGATAAAACTCACCAGATACTCTAGAAAACAAATATACCTACCGGTACCGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGc < 8:107218/140‑1 (MQ=255)
cgTGAGTTATTTTTGGTTCTCAGTTCGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATca < 7:382951/140‑1 (MQ=255)
tttGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAc < 5:406868/140‑1 (MQ=255)
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CTTTATGCAGTCGTTGCAGCAGGTGCTTAATAAAAATGAATTCCAGCTACTGCTTGGGTGTCATGAGTATAATCAGCTCAAAGAAGCTGAAATTCTGATGACGCTTCTTCAAGGCAACCCGGCGGCGTTAGTTATTTTTGGTTCTCAGTTGGCTGATAAAACTCACCAGATACTCGAGAAAACAAATATACCTACCGTTAACGTTGTCGGTTCCCCTTTCAGTCCGGCTCAAATTACCATCGAAACAGCATTTTTTGAAGCATCACATAAACTGAC > NZ_CP022686/3797354‑3797629
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
