Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,951,538 |
C→A |
20.4% |
A44A (GCC→GCA) |
topA → |
type I DNA topoisomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,951,538 | 0 | C | A | 20.4%
| 272.5
/ 18.6
| 164 | A44A (GCC→GCA) | topA | type I DNA topoisomerase |
| Reads supporting (aligned to +/- strand): ref base C (79/46); new base A (2/37); total (81/83) |
| Fisher's exact test for biased strand distribution p-value = 2.68e-11 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 164 total aligned reads displayed.
GGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAAGA > NZ_CP022686/4951400‑4951675
|
aaTATGGGTAACGCTATTGTCATCTTTGAGTCCCCGGCAAAAGCAAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCaaaaa < 2:879366/140‑1 (MQ=255)
atGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAag > 3:544286/1‑138 (MQ=255)
ggaaaaGCGCTTGAAATGGTGTAGTCCCCGGCAAACGCCAAAACCCTCAACAAGTATCTGGGTAGTGACTACGTGGTTAAATCCTGCGTGGGTCACATCC‑GCGATTTGCCGACCTGGGGCTAAACTGCCAAAACGAGt < 4:1046586/135‑1 (MQ=255)
gTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 5:437643/1‑140 (MQ=255)
gTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 5:874086/1‑140 (MQ=255)
aaaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 3:268815/1‑138 (MQ=255)
aaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCgcc > 7:795847/1‑138 (MQ=255)
aaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGAc > 6:804868/1‑140 (MQ=255)
ctTGTCATCGTTGAGCCCCCGGCAAACCCCAAAACGACCAACAAGTAGCTAGGTCGGGACTACGTGGTGAAATCCCGCGGCGGGCACATCC‑GCGATTTGCCGACCCGTGGCCCACCTGCCAAAACCAGGGCCGACTCTAc < 2:709568/140‑1 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAACCGATCAACAAGTATCTGGGTAGTGACTACGAGGTGAAATCCAGCGTCGGTCACAACC‑GCGAGTTGCCGACCAGTGGCTCCAATGCCAAAAAGAGTGCCTACTCTAcc > 6:468811/1‑140 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcc > 5:67675/1‑140 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcc > 6:1178492/1‑140 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcc > 2:223465/1‑140 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGCCTCAACTGCCAAAAAGAGTGCCGCCTCTAcc > 8:260916/1‑140 (MQ=255)
ttGCCATCGTTCAGGCCCCGGCAAACCCCAAAACTATCAACAATTATCTGGGTAGTGACTACGTGGTTAAATCCAGCGTCGGTCACATCC‑GCTATTTGCCGACCAGGGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcc < 2:546414/140‑1 (MQ=255)
gTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcc > 4:1302784/1‑138 (MQ=255)
gTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTAcc > 4:140461/1‑138 (MQ=255)
gTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTc > 2:1249548/1‑140 (MQ=255)
tCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCt > 3:883931/1‑138 (MQ=255)
cATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTc > 4:749932/1‑138 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 7:1161364/1‑140 (MQ=255)
ttGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 4:428653/1‑138 (MQ=255)
aGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATATGGGTAGTGAATACGTGGTTAAATCCAGCGTCGGTCACATCA‑GCGATTTGACGACCAGTGGATCAAATGCCAAAAAGAGTGCCGACTCTACCACCACCAAGACg > 5:280937/1‑140 (MQ=255)
tCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACg > 4:223481/1‑138 (MQ=255)
aaGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCt > 1:679209/1‑140 (MQ=255)
gCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATACAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCt > 3:424654/1‑138 (MQ=255)
acAAAACGACCAAAAATTATCTGGGTAGGTACTAGGTGTTTAAATCCAGCGTCGGTAACATAC‑GCTTTTTGCCGACCAGGGTCTCAACTGCAAAAAAGATTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTaaa < 7:227126/139‑1 (MQ=255)
tCAACAAGTATCTGTGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAATGATGaa > 8:361337/1‑140 (MQ=255)
caaGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCAAAAAAGAGTGCCGACTCTCCCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACg < 4:807413/138‑1 (MQ=255)
gtatgggggTAGTGACTCCGTGGTCAATCCCCGCGTCGGACA‑ATCCGGCTATTGGCCGACCAGTGGCGAACCTCCAAAAATGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGgcg < 2:578253/134‑1 (MQ=255)
ttCTGGGTAGTGACTACGTGGTCAAATCCAGCGGCGGCCACATCC‑GCGATTTGCCGACCAGTGGCTCAAATGCAAAAAAGTGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGct < 8:1161364/139‑1 (MQ=255)
tggtGGGTAGGGAGTAGGTGGTTATAGCCCGCGACGGTCTCATCG‑GCGATGTGCCGACCTGTGGCTATCCTGCAAAAAAGCTGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGct < 6:776939/137‑1 (MQ=255)
tCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGcta > 7:96843/1‑139 (MQ=255)
gttAGTGACTACGTGGTGAAATCCAGCGGCGGTCACATCC‑GCTATTGGCCGACCAGTGGCTCAACTCCCAAAACCAGCCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt < 5:771815/138‑1 (MQ=255)
ggTAGTGCCTACGTGGGTAAATCCAGCGGCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt < 6:426213/140‑1 (MQ=255)
ggTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt > 7:1000347/1‑140 (MQ=255)
ggTAGTGACTACGTGGGTAAAGCCACCGTCGGACCCTTCC‑GCCATTTGCCTACCCGTGTCTCAACTCCCAAAAACAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCtctc < 3:978457/138‑1 (MQ=255)
ggTAGGGACTACGTGGTGAAATCCCGCGGCGGACACATCC‑GCGATTTGCCGACCAGGGCCTCAACTGCCAAAACGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt < 8:462867/140‑1 (MQ=255)
gTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGACGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc > 5:51392/1‑140 (MQ=255)
tAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGTCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt > 3:628231/1‑138 (MQ=255)
tgttaCTAGGTGTTTAAATCCCGGGTCGTTCAAAACC‑GCTATTTGCCGAACAGTGGCTAAACTGCAAAAAATACTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 7:80853/136‑1 (MQ=255)
tgtcaCTACGTGTTCAAAACCCGCGGCGGCCACAGCC‑GCTTTTTGCCCACCTGGGGCCAAACTGACAAAAAGCGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 8:65730/136‑1 (MQ=255)
tgTGACTCCGTGGTTAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCTCCCAGTGGCTCAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 8:794209/139‑1 (MQ=255)
tgTGACTACGTGGTCAAAACCAGCGGCGGTAACGTCC‑GCGATTTGCCCACCTGTGGCTCAACTGCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 5:2294/139‑1 (MQ=255)
gTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAc > 8:1098638/1‑140 (MQ=255)
gTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAc > 6:1112422/1‑140 (MQ=255)
tGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAcc > 6:1029655/1‑140 (MQ=255)
gACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAc > 4:385455/1‑138 (MQ=255)
aCTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGt > 8:1170464/1‑140 (MQ=255)
aCTACGTGGTGAAATCCAGCGTCGGTCACATCA‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAATAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGACTAAAAAGGATGAACGTGGCGCACTCGTCAACCGt > 2:1343901/1‑140 (MQ=255)
tccGTGGTCAAACCCCGCGGCGGTCACATCC‑GCGATTTGCCGACCATTGGCACAACTGCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 1:8724/138‑1 (MQ=255)
tACGGGGTGAAACCCAGCTTCGGTCACATCC‑GCTATTTGCCGACCAGTGGCAAAACTCCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 8:104057/140‑1 (MQ=255)
caCGCGGTGAACTCCCGCGCCGGCCCCACCC‑GCTTTTTCCCGACCAGGGGCGCAACGCCCAAACCCAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGACTAAAAAGGATGAACGTGGCGCTCTCGTCAAGCGTAt < 8:693943/139‑1 (MQ=255)
aCGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATg > 7:1038155/1‑140 (MQ=255)
aCGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATg > 6:1277322/1‑140 (MQ=255)
aCGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACCGCTAAAAAGCCTAAAAAGGAAGACCGTGGCGCTCTCGTCAACCGTATg > 6:1277319/1‑140 (MQ=255)
ggtgAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATggg > 4:619335/1‑138 (MQ=255)
ggtgAAATACATCTTCTTTCACAAAC‑GGGTTTTGCACACCAGTGGCTAAACTGCAAAAAATAGTGCCGACTCTACATCCACCAAGACTGCTAAAAAGCCTAAAAAGGATGAACGTGGCTCTCTCGTCAACCGTATggggg < 7:597287/140‑1 (MQ=255)
gAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGt > 4:970669/1‑138 (MQ=255)
aaaTCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGa > 1:26731/1‑140 (MQ=255)
aaTCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGAc > 1:1085458/1‑140 (MQ=255)
aTCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAACGTAAGGGGGTTgc > 3:1342415/1‑137 (MQ=255)
gggTCGTTCACATCC‑GCTATTTGCCCACCAGTGGCACCACTCAAAAAAAGCCTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 5:46838/138‑1 (MQ=255)
gcgggggTCACATCC‑GCGATTTGCCGCCCAGTGGCACAACTCCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 1:304791/135‑1 (MQ=255)
gCGTGGGTCACATCC‑GCTATTTGCCGCCCAGTGGCTCAACTGCAAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 2:892556/140‑1 (MQ=255)
gCGTCGGCCACCTCC‑GCTATTTCCCGCCCAGGGGCTCAACTCCAAAAACGTCGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 8:207974/140‑1 (MQ=255)
cGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATTGGTGTTGACCCGTGGc > 6:1042954/1‑140 (MQ=255)
cGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTggg > 1:900709/1‑139 (MQ=255)
cGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCCTCAACAGTATGGGGGTTGACCCGtcta > 5:1165936/1‑137 (MQ=255)
ggcGGGCAAATCC‑GCGATTTCCCGACCAGTGCCTCAACTCCAAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 7:869213/138‑1 (MQ=255)
gcgggTAACATCC‑GCTATTTGCCCCCCTGTGGCTCAACTGCCAAAACGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 3:532296/135‑1 (MQ=255)
gTCGGACACATCC‑TCGATTGGCCGACCAGCGCCTAAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGTCGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 5:871306/140‑1 (MQ=255)
gTCGCTCACATCG‑GGTTTTTCCCTACCAGGGGCTCAACTCCCAAAAAGCGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 3:4682/138‑1 (MQ=255)
tCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCATAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGc > 3:141059/1‑138 (MQ=255)
ccacaCCC‑CCGAATAGCCGCCCATGGGCTCAACTCACAAAAACAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAAtt < 7:507577/139‑1 (MQ=255)
aTCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGa > 2:1333745/1‑140 (MQ=255)
c‑gctATTTGCCTACCAGTGCCTCAACTCCAAAAAACAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc < 8:1087728/140‑1 (MQ=255)
c‑gcgATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAg < 4:217024/138‑1 (MQ=255)
ggcgATTTCCCGCCCAGTGCATCAACTCCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc < 5:1182407/139‑1 (MQ=255)
ggcgATTGGCCGACCTGTGCCTCCACTCCAAAAACGCGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAACAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc < 7:658131/139‑1 (MQ=255)
cgggttttGCCGACCTGTGGCTACATTGCAAAAACCAGCGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAACGGATGAACGTGGCGCGCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc < 5:1196928/135‑1 (MQ=255)
ggtaTTTGCCGACACGTGGCAACAGTGCCAATAGGTGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 6:879579/137‑1 (MQ=255)
gctaTTTGCCGACCTTGGGCTCACCTCCAAAAAAGAGGGCCGACGCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGGTGACCCGTGGCACAATTGGGAGgcg < 8:236608/137‑1 (MQ=255)
gctaTTTGCCGACCTGTGACTCAACTGCCAAAAAGTGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 1:593725/137‑1 (MQ=255)
gcgATTTGCCGACCTGTGGCTCAACTGCCAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAgg < 4:314378/138‑1 (MQ=255)
gcgATTTGCCCACCAGTGGCTCAACTGCCAAAAAGCGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 6:727911/140‑1 (MQ=255)
gcgATTGGCCGACCAGTGGCTCAACTCCAAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 8:17878/140‑1 (MQ=255)
cgATTTGCCGACCAGTGGATCAACTCCCAAAAAGCGGCCCGACTCTACCTCCACCCAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcgc < 8:287348/140‑1 (MQ=255)
tttttGCCTACCTGTGGCTCAATTGCCAAAACTACGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGTGAGgcg < 4:808355/136‑1 (MQ=255)
tttttGCCTACATGTGGATAAACTGAAAAAACGTGTGCCGACTCTACCTCCACCAAGACGGATAAAAAGCCTAAAATGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCa < 7:255141/138‑1 (MQ=255)
ttttGCCGACTTGTGGCTAATCTCCCAAAAAGTGGGCCGTCTCTACCTCCACCAAGACGGCTATAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCAc < 1:969545/139‑1 (MQ=255)
aTTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcgc > 4:501939/1‑138 (MQ=255)
gCCGACCTGTGGAACAACTGCCAAAAACTGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATg < 1:1239712/140‑1 (MQ=255)
tgttgCTCAAGTGCAAAAACTAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGtt < 6:201458/136‑1 (MQ=255)
tgTGGCTCAACTGCAAAAAAGTGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAgtg < 4:1120063/137‑1 (MQ=255)
tGGCCCAACTGACAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGc < 2:396568/140‑1 (MQ=255)
gccTCAACTGCAAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGcc < 2:1114473/138‑1 (MQ=255)
cAACTCCAAAAAATTGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTg < 3:1037645/138‑1 (MQ=255)
gCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAagg > 1:657527/1‑139 (MQ=255)
gCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAaga > 7:509573/1‑140 (MQ=255)
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GGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCC‑GCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAAGA > NZ_CP022686/4951400‑4951675
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
